Wall clock time and date at job start Fri Apr 10 2020 17:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46958 * 187.04948 * 3 2 1 5 5 C 1.37105 * 119.99538 * 267.52734 * 4 3 2 6 6 H 1.08002 * 119.99615 * 146.90198 * 5 4 3 7 7 C 1.38949 * 120.00312 * 326.90398 * 5 4 3 8 8 N 1.31409 * 120.00188 * 157.15669 * 7 5 4 9 9 Si 1.86806 * 119.99683 * 337.15099 * 7 5 4 10 10 H 1.48498 * 109.46962 * 95.19898 * 9 7 5 11 11 H 1.48505 * 109.46829 * 215.19349 * 9 7 5 12 12 H 1.48495 * 109.47532 * 335.19579 * 9 7 5 13 13 C 1.34768 * 120.00498 * 87.52914 * 4 3 2 14 14 O 1.21295 * 120.00371 * 184.04594 * 13 4 3 15 15 C 1.50707 * 120.00006 * 4.04744 * 13 4 3 16 16 H 1.09007 * 109.46880 * 12.52230 * 15 13 4 17 17 N 1.46492 * 109.47257 * 132.51941 * 15 13 4 18 18 C 1.34775 * 120.00397 * 205.00188 * 17 15 13 19 19 O 1.21285 * 119.99985 * 0.02562 * 18 17 15 20 20 C 1.50701 * 120.00540 * 180.02562 * 18 17 15 21 21 C 1.52997 * 117.50008 * 248.74823 * 20 18 17 22 22 C 1.52991 * 117.50005 * 180.08560 * 20 18 17 23 23 C 1.52992 * 109.47125 * 252.52557 * 15 13 4 24 24 H 1.09001 * 109.47081 * 303.74232 * 23 15 13 25 25 C 1.52996 * 109.47137 * 183.74310 * 23 15 13 26 26 O 1.42893 * 109.47442 * 63.74001 * 23 15 13 27 27 H 4.40644 * 5.51373 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.47421 * 67.04932 * 3 2 1 29 29 H 1.09005 * 109.47327 * 307.04346 * 3 2 1 30 30 H 0.96999 * 120.00078 * 180.02562 * 8 7 5 31 31 H 0.97009 * 119.99828 * 25.00343 * 17 15 13 32 32 H 1.08998 * 115.54987 * 34.41514 * 20 18 17 33 33 H 1.09003 * 117.49749 * 359.97438 * 21 20 18 34 34 H 1.08995 * 117.50154 * 145.01899 * 21 20 18 35 35 H 1.09007 * 117.50176 * 214.97769 * 22 20 18 36 36 H 1.08997 * 117.50016 * 359.97438 * 22 20 18 37 37 H 1.09004 * 109.47439 * 59.99785 * 25 23 15 38 38 H 1.09002 * 109.47345 * 179.97438 * 25 23 15 39 39 H 1.08994 * 109.47089 * 299.99553 * 25 23 15 40 40 H 0.96706 * 114.00332 * 68.05134 * 26 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3717 0.1695 5 6 3.4101 2.1418 -0.9306 6 1 3.2477 3.2091 -0.8972 7 6 3.8990 1.5493 -2.0884 8 7 3.7480 2.1493 -3.2478 9 14 4.7712 -0.1001 -1.9969 10 1 3.8015 -1.1890 -2.2779 11 1 5.8638 -0.1387 -3.0019 12 1 5.3417 -0.2837 -0.6382 13 6 3.3106 1.8759 1.4067 14 8 3.6438 3.0337 1.5479 15 6 3.0946 1.0013 2.6149 16 1 3.0217 -0.0401 2.3012 17 7 4.2222 1.1555 3.5373 18 6 4.5276 0.1659 4.3997 19 8 3.8692 -0.8525 4.4119 20 6 5.6872 0.3248 5.3490 21 6 6.9150 -0.5585 5.1185 22 6 5.9842 -0.8348 6.3018 23 6 1.8001 1.4139 3.3183 24 1 1.8465 2.4727 3.5728 25 6 1.6286 0.5894 4.5956 26 8 0.6904 1.1813 2.4486 27 1 -1.0502 -0.0005 -0.0002 28 1 3.0095 -0.3999 -0.9463 29 1 3.0096 -0.6183 0.8203 30 1 4.0889 1.7355 -4.0561 31 1 4.7491 1.9700 3.5273 32 1 5.8570 1.3360 5.7187 33 1 6.8839 -1.2548 4.2805 34 1 7.8925 -0.1285 5.3369 35 1 6.3497 -0.5866 7.2983 36 1 5.3405 -1.7125 6.2424 37 1 2.4751 0.7668 5.2590 38 1 0.7066 0.8836 5.0970 39 1 1.5822 -0.4694 4.3410 40 1 0.5130 0.2460 2.2788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282031424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:14 Heat of formation + Delta-G solvation = -8.957711 kcal Electronic energy + Delta-G solvation = -24918.151407 eV Core-core repulsion = 21316.036527 eV Total energy + Delta-G solvation = -3602.114880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49978 -39.03639 -37.08031 -36.13296 -35.59233 -34.16581 -32.68406 -31.71154 -30.46621 -28.04958 -26.82652 -25.00296 -23.84741 -22.59152 -21.57688 -20.19628 -19.34782 -18.56549 -17.66876 -16.83301 -16.54734 -16.42744 -16.09128 -15.67779 -15.12345 -14.92404 -14.63685 -14.26063 -14.13301 -13.37140 -13.20619 -12.92275 -12.66412 -12.51933 -12.44193 -12.24858 -11.96016 -11.72900 -11.60845 -11.11885 -10.91530 -10.78532 -10.75089 -10.67619 -10.31292 -10.14269 -9.80527 -9.75194 -9.51180 -9.26037 -9.00167 -8.53301 -8.02370 -6.50067 -4.04149 2.47393 2.85338 2.96968 3.11904 3.13752 3.15892 3.35832 3.67598 3.72698 4.02796 4.29739 4.55438 4.63935 4.72356 4.75700 4.80724 4.93390 5.04358 5.09664 5.17883 5.27065 5.42792 5.48229 5.55001 5.61810 5.72183 5.78782 5.91761 5.92703 5.95138 6.17706 6.30936 6.40411 6.52003 7.35862 7.59153 7.84597 8.09933 8.14998 8.25334 8.33884 8.80160 9.18220 9.54950 10.61527 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.006234 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.218896 B = 4490.576451 C = 5369.199921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.177 4.177 3 C 0.187 3.813 4 N -0.445 5.445 5 C -0.318 4.318 6 H 0.112 0.888 7 C 0.062 3.938 8 N -0.853 5.853 9 Si 0.866 3.134 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.262 1.262 13 C 0.473 3.527 14 O -0.557 6.557 15 C 0.093 3.907 16 H 0.099 0.901 17 N -0.700 5.700 18 C 0.543 3.457 19 O -0.542 6.542 20 C -0.193 4.193 21 C -0.153 4.153 22 C -0.147 4.147 23 C 0.102 3.898 24 H 0.103 0.897 25 C -0.174 4.174 26 O -0.545 6.545 27 H 0.214 0.786 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.276 0.724 31 H 0.411 0.589 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.491 -7.804 15.016 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.179 4.179 3 C 0.064 3.936 4 N -0.165 5.165 5 C -0.445 4.445 6 H 0.129 0.871 7 C -0.144 4.144 8 N -0.488 5.488 9 Si 0.693 3.307 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.186 1.186 13 C 0.261 3.739 14 O -0.438 6.438 15 C -0.015 4.015 16 H 0.117 0.883 17 N -0.353 5.353 18 C 0.330 3.670 19 O -0.419 6.419 20 C -0.215 4.215 21 C -0.190 4.190 22 C -0.185 4.185 23 C 0.041 3.959 24 H 0.121 0.879 25 C -0.232 4.232 26 O -0.350 6.350 27 H 0.231 0.769 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.247 0.753 32 H 0.143 0.857 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.212 -7.246 14.826 16.547 hybrid contribution 0.564 -0.991 -0.295 1.178 sum 1.776 -8.238 14.531 16.798 Atomic orbital electron populations 1.24639 0.95524 1.00038 1.01524 1.23403 0.94534 1.00463 0.99460 1.18962 0.84782 0.87171 1.02667 1.43576 1.55998 1.11369 1.05555 1.19090 1.43221 0.94013 0.88169 0.87085 1.25274 0.96303 0.98138 0.94719 1.69759 1.41245 1.39965 0.97831 0.87156 0.80395 0.83874 0.79248 1.19848 1.20828 1.18589 1.19752 0.82154 0.88511 0.83519 1.90566 1.50648 1.17344 1.85210 1.21814 0.87783 1.01761 0.90191 0.88307 1.45620 1.32432 1.20590 1.36673 1.19603 0.84160 0.82867 0.80353 1.90676 1.52154 1.28985 1.70116 1.22177 0.97414 0.98799 1.03067 1.22956 0.93532 1.01509 1.01026 1.22948 1.02214 0.98750 0.94556 1.22116 0.84235 1.00846 0.88668 0.87916 1.22562 1.01734 1.01023 0.97856 1.86764 1.49086 1.30724 1.68445 0.76872 0.88852 0.89460 0.91348 0.75319 0.85744 0.88180 0.87754 0.88044 0.87404 0.91925 0.92435 0.91310 0.78226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.30 17.20 29.55 0.51 -2.80 16 2 C -0.18 -3.43 11.54 -37.13 -0.43 -3.86 16 3 C 0.19 3.90 4.41 -6.83 -0.03 3.87 16 4 N -0.45 -10.81 2.22 -117.93 -0.26 -11.08 16 5 C -0.32 -8.97 9.48 -14.93 -0.14 -9.11 16 6 H 0.11 3.53 7.78 -52.49 -0.41 3.13 16 7 C 0.06 1.70 5.31 -17.47 -0.09 1.61 16 8 N -0.85 -24.32 13.96 55.50 0.77 -23.55 16 9 Si 0.87 19.85 24.88 -169.99 -4.23 15.62 16 10 H -0.27 -5.82 6.65 56.52 0.38 -5.45 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 13 C 0.47 10.85 6.34 -10.99 -0.07 10.78 16 14 O -0.56 -14.38 16.37 5.54 0.09 -14.29 16 15 C 0.09 1.68 2.12 -69.09 -0.15 1.54 16 16 H 0.10 1.78 4.84 -51.92 -0.25 1.53 16 17 N -0.70 -10.84 4.89 -54.93 -0.27 -11.10 16 18 C 0.54 7.74 5.84 -10.99 -0.06 7.68 16 19 O -0.54 -8.88 13.39 5.55 0.07 -8.81 16 20 C -0.19 -2.05 6.19 -91.78 -0.57 -2.62 16 21 C -0.15 -1.44 10.24 -26.70 -0.27 -1.71 16 22 C -0.15 -1.35 10.05 -26.70 -0.27 -1.62 16 23 C 0.10 1.70 3.34 -26.74 -0.09 1.61 16 24 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 25 C -0.17 -2.46 7.96 37.16 0.30 -2.16 16 26 O -0.54 -9.47 11.08 -35.23 -0.39 -9.86 16 27 H 0.21 2.66 7.80 -54.08 -0.42 2.23 16 28 H 0.09 2.04 2.82 -51.93 -0.15 1.90 16 29 H 0.09 1.58 5.74 -51.93 -0.30 1.28 16 30 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.41 6.08 8.20 -40.82 -0.33 5.75 16 32 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.71 8.14 -51.92 -0.42 0.28 16 36 H 0.11 1.13 7.67 -51.93 -0.40 0.73 16 37 H 0.06 0.88 5.88 -51.93 -0.31 0.57 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.00 7.28 -51.93 -0.38 0.62 16 40 H 0.37 5.57 6.54 45.56 0.30 5.87 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -32.74 329.38 -4.96 -37.69 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -4.34 Total: 17.20 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.37 Total: 3.21 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.24 Total: -45.73 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.23 Total: -32.96 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.23 Total: 15.62 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.74 -4.96 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282031424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.736 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds