Wall clock time and date at job start Fri Apr 10 2020 17:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46958 * 187.04948 * 3 2 1 5 5 C 1.37105 * 119.99538 * 267.52734 * 4 3 2 6 6 H 1.08002 * 119.99615 * 146.90198 * 5 4 3 7 7 C 1.38949 * 120.00312 * 326.90398 * 5 4 3 8 8 N 1.31409 * 120.00188 * 157.15669 * 7 5 4 9 9 Si 1.86806 * 119.99683 * 337.15099 * 7 5 4 10 10 H 1.48498 * 109.46962 * 95.19898 * 9 7 5 11 11 H 1.48505 * 109.46829 * 215.19349 * 9 7 5 12 12 H 1.48495 * 109.47532 * 335.19579 * 9 7 5 13 13 C 1.34768 * 120.00498 * 87.52914 * 4 3 2 14 14 O 1.21295 * 120.00371 * 184.04594 * 13 4 3 15 15 C 1.50707 * 120.00006 * 4.04744 * 13 4 3 16 16 H 1.09007 * 109.46880 * 12.52230 * 15 13 4 17 17 N 1.46492 * 109.47257 * 132.51941 * 15 13 4 18 18 C 1.34775 * 120.00397 * 205.00188 * 17 15 13 19 19 O 1.21285 * 119.99985 * 0.02562 * 18 17 15 20 20 C 1.50701 * 120.00540 * 180.02562 * 18 17 15 21 21 C 1.52997 * 117.50008 * 248.74823 * 20 18 17 22 22 C 1.52991 * 117.50005 * 180.08560 * 20 18 17 23 23 C 1.52992 * 109.47125 * 252.52557 * 15 13 4 24 24 H 1.09001 * 109.47081 * 303.74232 * 23 15 13 25 25 C 1.52996 * 109.47137 * 183.74310 * 23 15 13 26 26 O 1.42893 * 109.47442 * 63.74001 * 23 15 13 27 27 H 4.40644 * 5.51373 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.47421 * 67.04932 * 3 2 1 29 29 H 1.09005 * 109.47327 * 307.04346 * 3 2 1 30 30 H 0.96999 * 120.00078 * 180.02562 * 8 7 5 31 31 H 0.97009 * 119.99828 * 25.00343 * 17 15 13 32 32 H 1.08998 * 115.54987 * 34.41514 * 20 18 17 33 33 H 1.09003 * 117.49749 * 359.97438 * 21 20 18 34 34 H 1.08995 * 117.50154 * 145.01899 * 21 20 18 35 35 H 1.09007 * 117.50176 * 214.97769 * 22 20 18 36 36 H 1.08997 * 117.50016 * 359.97438 * 22 20 18 37 37 H 1.09004 * 109.47439 * 59.99785 * 25 23 15 38 38 H 1.09002 * 109.47345 * 179.97438 * 25 23 15 39 39 H 1.08994 * 109.47089 * 299.99553 * 25 23 15 40 40 H 0.96706 * 114.00332 * 68.05134 * 26 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3717 0.1695 5 6 3.4101 2.1418 -0.9306 6 1 3.2477 3.2091 -0.8972 7 6 3.8990 1.5493 -2.0884 8 7 3.7480 2.1493 -3.2478 9 14 4.7712 -0.1001 -1.9969 10 1 3.8015 -1.1890 -2.2779 11 1 5.8638 -0.1387 -3.0019 12 1 5.3417 -0.2837 -0.6382 13 6 3.3106 1.8759 1.4067 14 8 3.6438 3.0337 1.5479 15 6 3.0946 1.0013 2.6149 16 1 3.0217 -0.0401 2.3012 17 7 4.2222 1.1555 3.5373 18 6 4.5276 0.1659 4.3997 19 8 3.8692 -0.8525 4.4119 20 6 5.6872 0.3248 5.3490 21 6 6.9150 -0.5585 5.1185 22 6 5.9842 -0.8348 6.3018 23 6 1.8001 1.4139 3.3183 24 1 1.8465 2.4727 3.5728 25 6 1.6286 0.5894 4.5956 26 8 0.6904 1.1813 2.4486 27 1 -1.0502 -0.0005 -0.0002 28 1 3.0095 -0.3999 -0.9463 29 1 3.0096 -0.6183 0.8203 30 1 4.0889 1.7355 -4.0561 31 1 4.7491 1.9700 3.5273 32 1 5.8570 1.3360 5.7187 33 1 6.8839 -1.2548 4.2805 34 1 7.8925 -0.1285 5.3369 35 1 6.3497 -0.5866 7.2983 36 1 5.3405 -1.7125 6.2424 37 1 2.4751 0.7668 5.2590 38 1 0.7066 0.8836 5.0970 39 1 1.5822 -0.4694 4.3410 40 1 0.5130 0.2460 2.2788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282031424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:13 Heat of formation + Delta-G solvation = -34.662462 kcal Electronic energy + Delta-G solvation = -24919.266049 eV Core-core repulsion = 21316.036527 eV Total energy + Delta-G solvation = -3603.229522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.86995 -40.49961 -38.46187 -37.44586 -37.01134 -35.51138 -34.56537 -33.40138 -31.75104 -29.54740 -28.45572 -26.72934 -24.99401 -23.29082 -22.99092 -21.40352 -20.92438 -20.23403 -18.93105 -18.50116 -18.03044 -17.82788 -17.55948 -17.28506 -16.41378 -16.14082 -15.90997 -15.72930 -15.36645 -15.04578 -14.85787 -14.57611 -14.26577 -14.13381 -13.75838 -13.53809 -13.28927 -12.89723 -12.85098 -12.69182 -12.40885 -12.26491 -12.01472 -11.62464 -11.49242 -11.41462 -11.28652 -11.24474 -11.03621 -10.92596 -10.56962 -10.07695 -10.00215 -8.59775 -6.20250 1.09843 1.21752 1.35068 1.39938 1.50738 1.66944 1.91994 2.08399 2.14463 2.67666 2.88362 2.93528 3.37705 3.48433 3.60129 3.63685 3.68170 3.84894 3.90518 4.02101 4.08667 4.15594 4.23161 4.26323 4.41871 4.77013 4.78137 4.91543 4.95463 5.02674 5.09136 5.13989 5.24659 5.27556 5.39546 5.93903 6.33398 6.42424 6.61817 6.74455 6.77465 7.09043 7.14419 7.62653 8.56999 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.006234 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.218896 B = 4490.576451 C = 5369.199921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.236 4.236 3 C 0.186 3.814 4 N -0.457 5.457 5 C -0.338 4.338 6 H 0.051 0.949 7 C 0.019 3.981 8 N -0.898 5.898 9 Si 0.935 3.065 10 H -0.242 1.242 11 H -0.277 1.277 12 H -0.253 1.253 13 C 0.470 3.530 14 O -0.597 6.597 15 C 0.109 3.891 16 H 0.103 0.897 17 N -0.702 5.702 18 C 0.542 3.458 19 O -0.563 6.563 20 C -0.205 4.205 21 C -0.149 4.149 22 C -0.137 4.137 23 C 0.106 3.894 24 H 0.089 0.911 25 C -0.158 4.158 26 O -0.558 6.558 27 H 0.255 0.745 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.283 0.717 31 H 0.413 0.587 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 -10.372 17.079 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.237 4.237 3 C 0.065 3.935 4 N -0.176 5.176 5 C -0.466 4.466 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.535 5.535 9 Si 0.758 3.242 10 H -0.168 1.168 11 H -0.204 1.204 12 H -0.177 1.177 13 C 0.259 3.741 14 O -0.481 6.481 15 C -0.001 4.001 16 H 0.121 0.879 17 N -0.356 5.356 18 C 0.331 3.669 19 O -0.442 6.442 20 C -0.226 4.226 21 C -0.186 4.186 22 C -0.174 4.174 23 C 0.045 3.955 24 H 0.107 0.893 25 C -0.215 4.215 26 O -0.365 6.365 27 H 0.271 0.729 28 H 0.101 0.899 29 H 0.131 0.869 30 H 0.093 0.907 31 H 0.250 0.750 32 H 0.165 0.835 33 H 0.104 0.896 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.281 -9.843 16.904 19.603 hybrid contribution 0.432 -0.104 -0.924 1.025 sum 1.713 -9.947 15.980 18.901 Atomic orbital electron populations 1.25573 0.96267 0.96860 0.98584 1.23361 0.94813 1.03287 1.02221 1.18984 0.86274 0.85120 1.03108 1.43641 1.56604 1.12494 1.04895 1.18651 1.45295 0.92259 0.90383 0.93108 1.26026 0.96089 1.02744 0.93607 1.69863 1.42307 1.42550 0.98780 0.86048 0.79342 0.79156 0.79617 1.16793 1.20374 1.17711 1.20626 0.80393 0.88501 0.84561 1.90531 1.52051 1.19421 1.86067 1.21585 0.89548 1.00326 0.88602 0.87904 1.45684 1.31970 1.21311 1.36656 1.20242 0.84667 0.81870 0.80079 1.90660 1.53143 1.29666 1.70753 1.22253 0.96524 1.00673 1.03107 1.23070 0.94214 1.00657 1.00700 1.23039 1.01365 0.97244 0.95726 1.22083 0.83293 1.00590 0.89578 0.89343 1.22403 1.02629 1.00247 0.96253 1.86733 1.49180 1.31813 1.68789 0.72856 0.89884 0.86903 0.90700 0.75038 0.83497 0.89629 0.85279 0.85235 0.88895 0.91762 0.90768 0.91386 0.77058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.74 17.20 74.32 1.28 -3.46 16 2 C -0.24 -8.81 11.54 31.12 0.36 -8.45 16 3 C 0.19 7.66 4.41 84.57 0.37 8.03 16 4 N -0.46 -22.71 2.22 -645.40 -1.44 -24.15 16 5 C -0.34 -20.09 9.48 84.04 0.80 -19.29 16 6 H 0.05 3.53 7.78 -2.91 -0.02 3.51 16 7 C 0.02 1.06 5.31 84.93 0.45 1.51 16 8 N -0.90 -53.16 13.96 21.66 0.30 -52.86 16 9 Si 0.94 41.07 24.88 68.60 1.71 42.78 16 10 H -0.24 -9.51 6.65 99.48 0.66 -8.84 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.25 -10.68 7.11 99.48 0.71 -9.98 16 13 C 0.47 22.13 6.34 87.66 0.56 22.69 16 14 O -0.60 -32.39 16.37 -3.08 -0.05 -32.44 16 15 C 0.11 3.87 2.12 44.25 0.09 3.96 16 16 H 0.10 3.57 4.84 -2.38 -0.01 3.56 16 17 N -0.70 -21.20 4.89 -446.10 -2.18 -23.38 16 18 C 0.54 14.55 5.84 87.66 0.51 15.06 16 19 O -0.56 -17.47 13.39 -3.04 -0.04 -17.51 16 20 C -0.20 -3.82 6.19 -11.54 -0.07 -3.89 16 21 C -0.15 -2.39 10.24 30.62 0.31 -2.08 16 22 C -0.14 -2.10 10.05 30.62 0.31 -1.79 16 23 C 0.11 3.43 3.34 30.59 0.10 3.53 16 24 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 25 C -0.16 -4.13 7.96 71.98 0.57 -3.56 16 26 O -0.56 -18.75 11.08 -148.98 -1.65 -20.40 16 27 H 0.26 5.22 7.80 -4.41 -0.03 5.18 16 28 H 0.08 3.52 2.82 -2.39 -0.01 3.52 16 29 H 0.11 3.92 5.74 -2.38 -0.01 3.90 16 30 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.41 12.14 8.20 -92.70 -0.76 11.38 16 32 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.09 1.75 7.67 -2.39 -0.02 1.73 16 37 H 0.06 1.67 5.88 -2.39 -0.01 1.65 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 1.81 7.28 -2.39 -0.02 1.80 16 40 H 0.38 10.69 6.54 -74.05 -0.48 10.20 16 Total: -1.00 -75.77 329.38 2.10 -73.66 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.19 Total: 42.04 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 5.64 Total: 12.26 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -3.31 Total: -100.39 kcal Atomic # 8 Polarization: -68.61 SS G_CDS: -1.74 Total: -70.35 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.71 Total: 42.78 kcal Total: -75.77 2.10 -73.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282031424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.001 kcal (2) G-P(sol) polarization free energy of solvation -75.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds