Wall clock time and date at job start Fri Apr 10 2020 17:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99514 * 2 1 4 4 O 1.20825 * 119.99955 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99851 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.91273 * 48.74637 * 5 3 2 7 7 C 1.53964 * 113.66760 * 277.45046 * 5 3 2 8 8 C 1.53778 * 87.11050 * 220.10947 * 7 5 3 9 9 C 1.53779 * 87.08327 * 25.36123 * 8 7 5 10 10 H 1.09003 * 113.61506 * 89.20157 * 9 8 7 11 11 C 1.50696 * 113.61416 * 220.02100 * 9 8 7 12 12 O 1.21279 * 120.00750 * 99.13474 * 11 9 8 13 13 N 1.34778 * 119.99888 * 279.13398 * 11 9 8 14 14 C 1.46506 * 120.00058 * 179.97438 * 13 11 9 15 15 C 1.50703 * 109.47289 * 270.00143 * 14 13 11 16 16 H 1.07994 * 119.99399 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99789 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00144 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99733 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46632 * 90.00476 * 19 17 15 21 21 H 1.48496 * 109.46690 * 210.00029 * 19 17 15 22 22 H 1.48498 * 109.47171 * 330.00226 * 19 17 15 23 23 C 1.46493 * 120.00131 * 0.02562 * 13 11 9 24 24 C 1.53000 * 109.47156 * 269.99999 * 23 13 11 25 25 C 1.47205 * 109.47360 * 180.02562 * 24 23 13 26 26 N 8.36116 * 108.03602 * 12.69221 * 2 1 3 27 27 H 1.09003 * 109.47302 * 299.99290 * 1 2 3 28 28 H 1.08993 * 109.47230 * 59.99985 * 1 2 3 29 29 H 1.09002 * 109.46639 * 180.02562 * 1 2 3 30 30 H 1.08996 * 113.66618 * 105.53490 * 7 5 3 31 31 H 1.09004 * 113.53237 * 334.65956 * 7 5 3 32 32 H 1.09001 * 113.61457 * 270.80910 * 8 7 5 33 33 H 1.09005 * 113.61410 * 139.90668 * 8 7 5 34 34 H 1.09001 * 109.47060 * 30.00593 * 14 13 11 35 35 H 1.09004 * 109.47073 * 150.00082 * 14 13 11 36 36 H 0.96997 * 119.99752 * 179.97438 * 18 17 15 37 37 H 1.09006 * 109.47571 * 29.99644 * 23 13 11 38 38 H 1.09005 * 109.47727 * 150.00102 * 23 13 11 39 39 H 1.09001 * 109.47195 * 299.99586 * 24 23 13 40 40 H 1.08997 * 109.47280 * 59.99767 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 4.0244 0.6363 -0.7557 7 6 4.1936 1.1245 1.3974 8 6 5.1816 2.2293 0.9876 9 6 4.1076 2.7144 -0.0004 10 1 3.4167 3.4407 0.4276 11 6 4.6643 3.1500 -1.3313 12 8 4.6293 2.3951 -2.2798 13 7 5.2012 4.3787 -1.4676 14 6 5.7429 4.8020 -2.7613 15 6 7.2015 4.4314 -2.8407 16 1 7.6772 3.9303 -2.0107 17 6 7.9282 4.7312 -3.9734 18 7 7.3487 5.3410 -4.9843 19 14 9.7364 4.2724 -4.0715 20 1 9.8708 2.9101 -4.6472 21 1 10.4481 5.2476 -4.9362 22 1 10.3274 4.2948 -2.7094 23 6 5.2441 5.2905 -0.3218 24 6 3.9665 6.1318 -0.2915 25 6 4.0098 7.0486 0.8595 26 7 4.0408 7.7560 1.7468 27 1 -0.3634 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 4.6655 0.1561 1.5632 31 1 3.5252 1.4151 2.2079 32 1 6.0821 1.8520 0.5030 33 1 5.3953 2.9416 1.7845 34 1 5.1975 4.3052 -3.5637 35 1 5.6363 5.8820 -2.8640 36 1 7.8601 5.5522 -5.7810 37 1 5.3207 4.7131 0.5995 38 1 6.1094 5.9472 -0.4121 39 1 3.8898 6.7094 -1.2127 40 1 3.1012 5.4753 -0.2012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285137682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:16 Heat of formation + Delta-G solvation = -76.128273 kcal Electronic energy + Delta-G solvation = -23928.458127 eV Core-core repulsion = 20323.430513 eV Total energy + Delta-G solvation = -3605.027614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.04348 -39.58124 -37.52269 -36.76394 -36.25098 -35.21347 -32.86251 -30.81660 -28.84414 -28.01075 -26.38470 -26.04727 -23.98764 -22.78470 -21.69506 -19.78617 -18.70357 -17.91217 -17.45742 -17.05598 -16.48034 -16.44269 -16.19922 -15.70002 -14.73156 -14.47182 -14.37212 -14.21121 -13.71688 -13.49983 -13.38307 -13.02647 -12.72338 -12.50805 -12.35077 -12.26243 -12.10399 -11.85962 -11.72381 -11.54856 -11.28454 -11.07619 -10.94682 -10.89101 -10.86956 -10.61955 -10.57492 -10.29258 -10.18271 -9.71381 -8.97218 -8.47450 -7.84564 -6.08912 -4.13712 2.16133 2.64931 2.77593 2.86390 3.23534 3.29047 3.35658 3.37345 3.66141 4.19039 4.24780 4.40814 4.41760 4.60864 4.72622 4.96639 5.00364 5.04738 5.04799 5.18694 5.24032 5.27789 5.38539 5.42436 5.58127 5.60483 5.67350 5.77026 5.83722 5.88531 6.11808 6.25124 6.31584 6.94168 7.36617 7.43038 7.61892 7.71289 7.86885 8.16998 8.25968 8.82294 8.97216 9.51790 10.99268 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.004890 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.178153 B = 5724.297471 C = 6940.699772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.476 3.524 4 O -0.507 6.507 5 C -0.090 4.090 6 H 0.140 0.860 7 C -0.120 4.120 8 C -0.123 4.123 9 C -0.121 4.121 10 H 0.121 0.879 11 C 0.519 3.481 12 O -0.533 6.533 13 N -0.592 5.592 14 C 0.244 3.756 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.118 3.882 24 C -0.054 4.054 25 C 0.219 3.781 26 N -0.447 5.447 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.466 -7.843 12.403 17.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.319 3.681 4 O -0.394 6.394 5 C -0.109 4.109 6 H 0.157 0.843 7 C -0.157 4.157 8 C -0.161 4.161 9 C -0.142 4.142 10 H 0.139 0.861 11 C 0.305 3.695 12 O -0.410 6.410 13 N -0.323 5.323 14 C 0.125 3.875 15 C -0.567 4.567 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.009 4.009 24 C -0.095 4.095 25 C -0.099 4.099 26 N -0.124 5.124 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.135 0.865 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.625 -6.802 12.999 17.547 hybrid contribution 0.662 -0.307 -0.629 0.964 sum -8.963 -7.109 12.370 16.849 Atomic orbital electron populations 1.23251 0.76699 1.03513 1.02509 1.86529 1.23160 1.33634 1.84068 1.23648 0.91746 0.81197 0.71536 1.90639 1.67005 1.36426 1.45350 1.22512 0.87075 0.99690 1.01655 0.84251 1.22872 0.98032 1.00684 0.94123 1.22842 0.97133 0.98044 0.98032 1.22860 0.99135 0.96044 0.96187 0.86072 1.20006 0.78341 0.82139 0.88966 1.90681 1.57214 1.52264 1.40804 1.48144 1.58437 1.12898 1.12834 1.19370 0.93947 0.95612 0.78577 1.21405 0.94679 1.38808 1.01771 0.92319 1.24918 0.98656 0.95003 0.95400 1.69923 1.36588 1.41000 1.05723 0.86522 0.84694 0.78348 0.77997 1.20572 1.21199 1.19897 1.21331 0.96087 0.93144 0.90308 1.19938 1.02215 0.95496 0.91871 1.29070 0.92944 0.93698 0.94172 1.81164 1.08878 1.10648 1.11757 0.92060 0.91837 0.88247 0.89521 0.89499 0.88462 0.89788 0.93595 0.94689 0.92674 0.90499 0.88746 0.86518 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.33 10.57 -39.26 -0.41 -4.74 16 3 C 0.48 6.50 7.49 36.00 0.27 6.77 16 4 O -0.51 -7.96 15.65 -18.75 -0.29 -8.25 16 5 C -0.09 -1.14 3.58 -90.86 -0.33 -1.47 16 6 H 0.14 1.92 7.45 -51.93 -0.39 1.54 16 7 C -0.12 -1.11 7.64 -25.82 -0.20 -1.31 16 8 C -0.12 -1.30 6.84 -25.92 -0.18 -1.48 16 9 C -0.12 -1.62 2.12 -90.96 -0.19 -1.81 16 10 H 0.12 1.49 6.25 -51.93 -0.32 1.17 16 11 C 0.52 9.59 7.20 -10.99 -0.08 9.52 16 12 O -0.53 -12.26 15.49 5.56 0.09 -12.17 16 13 N -0.59 -10.91 2.46 -175.05 -0.43 -11.34 16 14 C 0.24 5.78 5.16 -5.19 -0.03 5.76 16 15 C -0.53 -13.92 9.39 -34.44 -0.32 -14.25 16 16 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 19 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.12 1.61 5.07 -4.05 -0.02 1.58 16 24 C -0.05 -0.62 5.97 -29.52 -0.18 -0.79 16 25 C 0.22 2.80 15.43 -20.78 -0.32 2.48 16 26 N -0.45 -6.79 18.53 42.13 0.78 -6.01 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.10 1.14 8.09 -51.93 -0.42 0.72 16 33 H 0.08 0.73 7.60 -51.93 -0.39 0.33 16 34 H 0.05 1.25 7.42 -51.93 -0.39 0.87 16 35 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.08 0.87 5.66 -51.93 -0.29 0.58 16 38 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 39 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.11 1.13 7.24 -51.93 -0.38 0.76 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -33.83 349.52 -5.39 -39.21 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.50 Total: -1.19 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -0.60 Total: 7.97 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 1.09 Total: -42.07 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.62 Total: -25.17 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.83 -5.39 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285137682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.915 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds