Wall clock time and date at job start Fri Apr 10 2020 17:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99514 * 2 1 4 4 O 1.20825 * 119.99955 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99851 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.91273 * 48.74637 * 5 3 2 7 7 C 1.53964 * 113.66760 * 277.45046 * 5 3 2 8 8 C 1.53778 * 87.11050 * 220.10947 * 7 5 3 9 9 C 1.53779 * 87.08327 * 25.36123 * 8 7 5 10 10 H 1.09003 * 113.61506 * 89.20157 * 9 8 7 11 11 C 1.50696 * 113.61416 * 220.02100 * 9 8 7 12 12 O 1.21279 * 120.00750 * 99.13474 * 11 9 8 13 13 N 1.34778 * 119.99888 * 279.13398 * 11 9 8 14 14 C 1.46506 * 120.00058 * 179.97438 * 13 11 9 15 15 C 1.50703 * 109.47289 * 270.00143 * 14 13 11 16 16 H 1.07994 * 119.99399 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99789 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00144 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99733 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46632 * 90.00476 * 19 17 15 21 21 H 1.48496 * 109.46690 * 210.00029 * 19 17 15 22 22 H 1.48498 * 109.47171 * 330.00226 * 19 17 15 23 23 C 1.46493 * 120.00131 * 0.02562 * 13 11 9 24 24 C 1.53000 * 109.47156 * 269.99999 * 23 13 11 25 25 C 1.47205 * 109.47360 * 180.02562 * 24 23 13 26 26 N 8.36116 * 108.03602 * 12.69221 * 2 1 3 27 27 H 1.09003 * 109.47302 * 299.99290 * 1 2 3 28 28 H 1.08993 * 109.47230 * 59.99985 * 1 2 3 29 29 H 1.09002 * 109.46639 * 180.02562 * 1 2 3 30 30 H 1.08996 * 113.66618 * 105.53490 * 7 5 3 31 31 H 1.09004 * 113.53237 * 334.65956 * 7 5 3 32 32 H 1.09001 * 113.61457 * 270.80910 * 8 7 5 33 33 H 1.09005 * 113.61410 * 139.90668 * 8 7 5 34 34 H 1.09001 * 109.47060 * 30.00593 * 14 13 11 35 35 H 1.09004 * 109.47073 * 150.00082 * 14 13 11 36 36 H 0.96997 * 119.99752 * 179.97438 * 18 17 15 37 37 H 1.09006 * 109.47571 * 29.99644 * 23 13 11 38 38 H 1.09005 * 109.47727 * 150.00102 * 23 13 11 39 39 H 1.09001 * 109.47195 * 299.99586 * 24 23 13 40 40 H 1.08997 * 109.47280 * 59.99767 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 4.0244 0.6363 -0.7557 7 6 4.1936 1.1245 1.3974 8 6 5.1816 2.2293 0.9876 9 6 4.1076 2.7144 -0.0004 10 1 3.4167 3.4407 0.4276 11 6 4.6643 3.1500 -1.3313 12 8 4.6293 2.3951 -2.2798 13 7 5.2012 4.3787 -1.4676 14 6 5.7429 4.8020 -2.7613 15 6 7.2015 4.4314 -2.8407 16 1 7.6772 3.9303 -2.0107 17 6 7.9282 4.7312 -3.9734 18 7 7.3487 5.3410 -4.9843 19 14 9.7364 4.2724 -4.0715 20 1 9.8708 2.9101 -4.6472 21 1 10.4481 5.2476 -4.9362 22 1 10.3274 4.2948 -2.7094 23 6 5.2441 5.2905 -0.3218 24 6 3.9665 6.1318 -0.2915 25 6 4.0098 7.0486 0.8595 26 7 4.0408 7.7560 1.7468 27 1 -0.3634 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 4.6655 0.1561 1.5632 31 1 3.5252 1.4151 2.2079 32 1 6.0821 1.8520 0.5030 33 1 5.3953 2.9416 1.7845 34 1 5.1975 4.3052 -3.5637 35 1 5.6363 5.8820 -2.8640 36 1 7.8601 5.5522 -5.7810 37 1 5.3207 4.7131 0.5995 38 1 6.1094 5.9472 -0.4121 39 1 3.8898 6.7094 -1.2127 40 1 3.1012 5.4753 -0.2012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285137682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:15 Heat of formation + Delta-G solvation = -96.889339 kcal Electronic energy + Delta-G solvation = -23929.358394 eV Core-core repulsion = 20323.430513 eV Total energy + Delta-G solvation = -3605.927882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.11025 -40.80603 -38.63832 -37.95727 -37.27956 -36.67363 -34.81711 -32.17924 -29.98942 -29.34360 -27.46874 -27.18929 -25.31246 -24.44038 -22.63719 -20.89510 -19.92777 -19.02283 -18.68434 -18.31085 -18.10969 -17.53140 -17.31148 -17.10657 -16.34288 -15.75907 -15.71474 -15.17204 -15.07898 -14.57615 -14.36258 -14.26523 -13.94278 -13.83630 -13.56551 -13.52442 -13.17621 -13.08596 -12.95882 -12.79620 -12.70162 -12.55598 -12.48713 -12.14181 -12.05945 -11.89845 -11.78656 -11.64579 -11.46268 -11.26650 -10.57532 -10.46120 -9.48012 -8.16021 -6.28584 1.13462 1.42390 1.44296 1.53406 1.64502 1.76526 1.82531 1.87745 2.29492 2.47352 3.09083 3.16354 3.24893 3.49758 3.70698 3.75932 3.91343 4.06520 4.12161 4.23986 4.32628 4.34565 4.49544 4.66793 4.69629 4.72606 4.81103 4.86001 4.97402 5.03219 5.07489 5.13276 5.34130 5.35424 5.40449 5.63241 5.88768 6.13988 6.58174 6.70460 6.74550 6.82781 7.34674 7.50433 8.91090 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.004890 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.178153 B = 5724.297471 C = 6940.699772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.476 3.524 4 O -0.533 6.533 5 C -0.101 4.101 6 H 0.122 0.878 7 C -0.098 4.098 8 C -0.116 4.116 9 C -0.118 4.118 10 H 0.139 0.861 11 C 0.513 3.487 12 O -0.589 6.589 13 N -0.594 5.594 14 C 0.258 3.742 15 C -0.537 4.537 16 H 0.059 0.941 17 C 0.009 3.991 18 N -0.929 5.929 19 Si 0.960 3.040 20 H -0.283 1.283 21 H -0.281 1.281 22 H -0.260 1.260 23 C 0.114 3.886 24 C -0.042 4.042 25 C 0.247 3.753 26 N -0.484 5.484 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.132 0.868 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.000 1.000 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.246 -8.574 14.983 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.320 3.680 4 O -0.422 6.422 5 C -0.120 4.120 6 H 0.140 0.860 7 C -0.135 4.135 8 C -0.154 4.154 9 C -0.140 4.140 10 H 0.157 0.843 11 C 0.302 3.698 12 O -0.470 6.470 13 N -0.323 5.323 14 C 0.137 3.863 15 C -0.575 4.575 16 H 0.077 0.923 17 C -0.190 4.190 18 N -0.569 5.569 19 Si 0.785 3.215 20 H -0.209 1.209 21 H -0.207 1.207 22 H -0.184 1.184 23 C -0.010 4.010 24 C -0.083 4.083 25 C -0.071 4.071 26 N -0.162 5.162 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.150 0.850 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.132 0.868 34 H 0.018 0.982 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.412 -7.529 15.633 19.740 hybrid contribution 0.507 -0.124 -1.481 1.570 sum -8.905 -7.653 14.153 18.389 Atomic orbital electron populations 1.23557 0.74947 1.05697 1.02474 1.86517 1.24926 1.32811 1.83573 1.23822 0.92085 0.81251 0.70830 1.90619 1.67604 1.37219 1.46808 1.22606 0.86760 0.98909 1.03760 0.85987 1.22872 0.97125 1.01329 0.92170 1.22878 0.96023 0.98964 0.97518 1.22962 1.00636 0.96813 0.93542 0.84339 1.20953 0.77289 0.81248 0.90331 1.90649 1.59363 1.53783 1.43194 1.48039 1.57998 1.13931 1.12340 1.18832 0.92507 0.94706 0.80277 1.21742 0.95897 1.38179 1.01709 0.92305 1.25763 1.02992 0.95036 0.95161 1.70042 1.38230 1.42294 1.06316 0.85527 0.79712 0.77685 0.78574 1.20879 1.20680 1.18400 1.21553 0.96964 0.92971 0.89535 1.19830 1.01690 0.95242 0.91512 1.29000 0.91724 0.92874 0.93475 1.81206 1.10131 1.11817 1.13012 0.91295 0.92710 0.85032 0.87536 0.87486 0.89748 0.86849 0.98169 0.94930 0.92650 0.87358 0.89321 0.86314 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.36 -8.29 10.57 -51.42 -0.54 -8.83 16 3 C 0.48 12.46 7.49 71.23 0.53 13.00 16 4 O -0.53 -16.17 15.65 21.97 0.34 -15.83 16 5 C -0.10 -2.44 3.58 -10.95 -0.04 -2.48 16 6 H 0.12 3.41 7.45 -2.39 -0.02 3.39 16 7 C -0.10 -1.47 7.64 31.18 0.24 -1.24 16 8 C -0.12 -2.09 6.84 31.12 0.21 -1.88 16 9 C -0.12 -2.98 2.12 -11.02 -0.02 -3.00 16 10 H 0.14 3.02 6.25 -2.39 -0.01 3.00 16 11 C 0.51 19.08 7.20 87.66 0.63 19.71 16 12 O -0.59 -28.30 15.49 -3.02 -0.05 -28.35 16 13 N -0.59 -21.88 2.46 -826.14 -2.03 -23.91 16 14 C 0.26 12.66 5.16 85.63 0.44 13.10 16 15 C -0.54 -28.76 9.39 25.60 0.24 -28.52 16 16 H 0.06 3.08 7.81 -2.91 -0.02 3.05 16 17 C 0.01 0.51 5.46 84.65 0.46 0.98 16 18 N -0.93 -54.20 13.29 21.45 0.28 -53.92 16 19 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 23 C 0.11 2.92 5.07 86.38 0.44 3.36 16 24 C -0.04 -0.87 5.97 28.79 0.17 -0.70 16 25 C 0.25 5.77 15.43 89.45 1.38 7.15 16 26 N -0.48 -13.84 18.53 20.00 0.37 -13.47 16 27 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 28 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 29 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.11 1.26 8.09 -2.39 -0.02 1.24 16 32 H 0.08 1.79 8.09 -2.39 -0.02 1.77 16 33 H 0.11 1.41 7.60 -2.38 -0.02 1.40 16 34 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 35 H 0.03 1.59 8.07 -2.38 -0.02 1.58 16 36 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 37 H 0.11 2.10 5.66 -2.38 -0.01 2.09 16 38 H 0.09 2.41 8.07 -2.38 -0.02 2.39 16 39 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.13 2.30 7.24 -2.39 -0.02 2.29 16 Total: -1.00 -76.36 349.52 7.34 -69.01 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.05 Total: 8.97 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 5.88 Total: 21.10 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -1.37 Total: -91.30 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.25 Total: -53.02 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -76.36 7.34 -69.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285137682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.874 kcal (2) G-P(sol) polarization free energy of solvation -76.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds