Wall clock time and date at job start Fri Apr 10 2020 17:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 117.00270 * 2 1 4 4 O 1.20825 * 119.99902 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00179 * 180.02562 * 3 2 1 6 6 H 1.09004 * 112.84878 * 278.66941 * 5 3 2 7 7 C 1.53782 * 113.61449 * 49.86182 * 5 3 2 8 8 C 1.53781 * 87.07852 * 140.06973 * 7 5 3 9 9 C 1.53779 * 87.08336 * 334.56751 * 8 7 5 10 10 H 1.08997 * 113.61354 * 139.98239 * 9 8 7 11 11 C 1.50697 * 113.61595 * 270.88639 * 9 8 7 12 12 O 1.21287 * 119.99934 * 27.52497 * 11 9 8 13 13 N 1.34770 * 120.00294 * 207.52233 * 11 9 8 14 14 C 1.46498 * 120.00474 * 184.32299 * 13 11 9 15 15 C 1.50700 * 109.47630 * 89.99797 * 14 13 11 16 16 H 1.07998 * 119.99452 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00115 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00053 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99869 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47330 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47380 * 120.00385 * 19 17 15 22 22 H 1.48503 * 109.47573 * 240.00439 * 19 17 15 23 23 C 1.46502 * 120.00058 * 4.32040 * 13 11 9 24 24 C 1.53005 * 109.47294 * 83.82862 * 23 13 11 25 25 C 1.47197 * 109.47476 * 184.46372 * 24 23 13 26 26 N 8.04101 * 114.49241 * 10.87901 * 2 1 3 27 27 H 1.09009 * 109.46733 * 299.99876 * 1 2 3 28 28 H 1.08994 * 109.47497 * 59.99380 * 1 2 3 29 29 H 1.08998 * 109.47549 * 180.02562 * 1 2 3 30 30 H 1.09002 * 113.61658 * 254.61286 * 7 5 3 31 31 H 1.08994 * 113.61466 * 25.52158 * 7 5 3 32 32 H 1.09002 * 113.61957 * 89.11829 * 8 7 5 33 33 H 1.09006 * 113.61068 * 219.93776 * 8 7 5 34 34 H 1.09006 * 109.47307 * 210.00573 * 14 13 11 35 35 H 1.09004 * 109.47133 * 329.99530 * 14 13 11 36 36 H 0.96999 * 119.99553 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.47369 * 203.83264 * 23 13 11 38 38 H 1.08999 * 109.46811 * 323.83362 * 23 13 11 39 39 H 1.08997 * 109.47247 * 304.47015 * 24 23 13 40 40 H 1.09009 * 109.46519 * 64.46604 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9973 1.1455 0.9922 7 6 4.2286 0.4001 -1.0782 8 6 5.2170 1.5575 -1.2983 9 6 4.1211 2.4919 -0.7592 10 1 4.4999 3.2780 -0.1061 11 6 3.1930 3.0125 -1.8263 12 8 3.0011 2.3632 -2.8326 13 7 2.5761 4.1995 -1.6624 14 6 1.6020 4.6619 -2.6540 15 6 0.2268 4.1796 -2.2704 16 1 0.0919 3.5880 -1.3769 17 6 -0.8592 4.4943 -3.0593 18 7 -0.6949 5.2150 -4.1470 19 14 -2.5637 3.8957 -2.5841 20 1 -2.4796 3.1095 -1.3270 21 1 -3.4587 5.0627 -2.3786 22 1 -3.1079 3.0394 -3.6684 23 6 2.8797 5.0274 -0.4925 24 6 4.1368 5.8556 -0.7661 25 6 4.5032 6.6064 0.4459 26 7 4.7856 7.1859 1.3811 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 4.6943 -0.5025 -0.6826 31 1 3.5867 0.2048 -1.9372 32 1 6.0993 1.5056 -0.6603 33 1 5.4621 1.7290 -2.3465 34 1 1.6083 5.7514 -2.6890 35 1 1.8656 4.2655 -3.6346 36 1 -1.4590 5.4361 -4.7023 37 1 2.0414 5.6948 -0.2922 38 1 3.0483 4.3861 0.3726 39 1 4.9557 5.1920 -1.0440 40 1 3.9421 6.5533 -1.5807 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285137686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:18 Heat of formation + Delta-G solvation = -65.715969 kcal Electronic energy + Delta-G solvation = -24970.511356 eV Core-core repulsion = 21365.935253 eV Total energy + Delta-G solvation = -3604.576103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98551 -39.24450 -37.34612 -36.62636 -35.96764 -35.06911 -32.77086 -30.77547 -28.43667 -27.90466 -26.12723 -25.84870 -23.90654 -22.85551 -21.29284 -20.21229 -18.12199 -17.58954 -17.32993 -16.73170 -16.49528 -16.29605 -15.94395 -14.97692 -14.83369 -14.65008 -14.25996 -14.06339 -13.71089 -13.39306 -13.07326 -12.80322 -12.54450 -12.45669 -12.34516 -12.14287 -11.99786 -11.72057 -11.60736 -11.27803 -11.22449 -10.93074 -10.80508 -10.79858 -10.62407 -10.44792 -10.32968 -10.08285 -9.85736 -9.48702 -8.90735 -8.38365 -7.69652 -5.98827 -3.99939 2.58219 2.75221 2.83412 2.95025 3.21710 3.31138 3.38778 3.44007 3.71109 4.18565 4.39641 4.49547 4.61506 4.77450 4.84905 5.07911 5.17295 5.23130 5.33651 5.37060 5.37441 5.44453 5.50578 5.52454 5.62670 5.78386 5.86204 5.91593 5.99295 6.03568 6.22961 6.40539 6.73361 7.02674 7.44108 7.56379 7.59930 7.97161 8.15023 8.33436 8.37402 8.95415 9.15600 9.64353 11.10025 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.007748 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.066691 B = 3613.149163 C = 5171.066629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.453 3.547 4 O -0.466 6.466 5 C -0.090 4.090 6 H 0.131 0.869 7 C -0.120 4.120 8 C -0.121 4.121 9 C -0.126 4.126 10 H 0.100 0.900 11 C 0.530 3.470 12 O -0.537 6.537 13 N -0.578 5.578 14 C 0.245 3.755 15 C -0.517 4.517 16 H 0.075 0.925 17 C 0.057 3.943 18 N -0.900 5.900 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.122 3.878 24 C -0.054 4.054 25 C 0.218 3.782 26 N -0.447 5.447 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.260 0.740 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.425 -7.884 8.117 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.294 3.706 4 O -0.350 6.350 5 C -0.110 4.110 6 H 0.148 0.852 7 C -0.157 4.157 8 C -0.159 4.159 9 C -0.148 4.148 10 H 0.118 0.882 11 C 0.316 3.684 12 O -0.414 6.414 13 N -0.307 5.307 14 C 0.126 3.874 15 C -0.556 4.556 16 H 0.093 0.907 17 C -0.144 4.144 18 N -0.540 5.540 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.004 4.004 24 C -0.095 4.095 25 C -0.100 4.100 26 N -0.124 5.124 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.360 -6.950 8.802 15.268 hybrid contribution -1.471 -0.291 -0.023 1.500 sum 8.889 -7.241 8.779 14.440 Atomic orbital electron populations 1.23223 0.76498 1.02984 1.03040 1.86421 1.23222 1.33678 1.84550 1.23470 0.91493 0.81952 0.73711 1.90840 1.66286 1.35521 1.42318 1.22397 0.88127 0.98805 1.01651 0.85170 1.22924 0.97871 0.96756 0.98143 1.22747 0.95628 0.94792 1.02743 1.22647 0.97367 0.96977 0.97770 0.88229 1.19485 0.80646 0.81713 0.86530 1.90665 1.64100 1.56867 1.29776 1.47937 1.41243 1.17665 1.23854 1.19352 0.85936 0.94785 0.87301 1.21722 0.91360 1.32691 1.09825 0.90680 1.24927 0.99040 0.95425 0.94980 1.69944 1.30712 1.38755 1.14571 0.86532 0.84470 0.78555 0.78410 1.19789 1.21159 1.21146 1.21236 0.95304 0.94297 0.89580 1.20005 1.00845 0.98703 0.89972 1.29110 0.92974 0.93412 0.94472 1.81194 1.09418 1.10175 1.11631 0.92278 0.91273 0.88675 0.90561 0.88016 0.89285 0.89703 0.94980 0.93752 0.93035 0.88798 0.90667 0.87563 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.36 -5.69 10.45 -39.24 -0.41 -6.10 16 3 C 0.45 7.58 6.75 36.00 0.24 7.82 16 4 O -0.47 -9.40 13.11 -18.75 -0.25 -9.65 16 5 C -0.09 -1.14 4.20 -90.96 -0.38 -1.52 16 6 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 7 C -0.12 -1.43 7.12 -25.92 -0.18 -1.61 16 8 C -0.12 -1.30 7.44 -25.92 -0.19 -1.50 16 9 C -0.13 -1.66 3.23 -90.96 -0.29 -1.96 16 10 H 0.10 1.05 5.60 -51.93 -0.29 0.76 16 11 C 0.53 9.96 4.84 -10.99 -0.05 9.91 16 12 O -0.54 -12.30 14.78 5.55 0.08 -12.22 16 13 N -0.58 -11.16 1.99 -175.05 -0.35 -11.51 16 14 C 0.24 6.03 5.16 -5.19 -0.03 6.01 16 15 C -0.52 -14.28 9.39 -34.44 -0.32 -14.61 16 16 H 0.08 2.13 6.22 -52.49 -0.33 1.80 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 19 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 C 0.12 1.82 4.97 -4.04 -0.02 1.80 16 24 C -0.05 -0.60 5.73 -29.52 -0.17 -0.76 16 25 C 0.22 2.73 15.43 -20.76 -0.32 2.41 16 26 N -0.45 -6.69 18.54 42.15 0.78 -5.91 16 27 H 0.06 0.82 8.13 -51.92 -0.42 0.40 16 28 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.55 7.17 -51.93 -0.37 1.18 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.04 1.24 7.37 -51.93 -0.38 0.86 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.09 1.51 8.03 -51.93 -0.42 1.09 16 38 H 0.08 1.03 6.54 -51.93 -0.34 0.69 16 39 H 0.11 0.97 7.44 -51.93 -0.39 0.58 16 40 H 0.12 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -35.04 342.94 -5.45 -40.49 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.44 Total: -0.64 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -0.75 Total: 9.09 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 1.17 Total: -43.07 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.57 Total: -27.96 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.04 -5.45 -40.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285137686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.223 kcal (2) G-P(sol) polarization free energy of solvation -35.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds