Wall clock time and date at job start Fri Apr 10 2020 17:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 117.00270 * 2 1 4 4 O 1.20825 * 119.99902 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00179 * 180.02562 * 3 2 1 6 6 H 1.09004 * 112.84878 * 278.66941 * 5 3 2 7 7 C 1.53782 * 113.61449 * 49.86182 * 5 3 2 8 8 C 1.53781 * 87.07852 * 140.06973 * 7 5 3 9 9 C 1.53779 * 87.08336 * 334.56751 * 8 7 5 10 10 H 1.08997 * 113.61354 * 139.98239 * 9 8 7 11 11 C 1.50697 * 113.61595 * 270.88639 * 9 8 7 12 12 O 1.21287 * 119.99934 * 27.52497 * 11 9 8 13 13 N 1.34770 * 120.00294 * 207.52233 * 11 9 8 14 14 C 1.46498 * 120.00474 * 184.32299 * 13 11 9 15 15 C 1.50700 * 109.47630 * 89.99797 * 14 13 11 16 16 H 1.07998 * 119.99452 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00115 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00053 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99869 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47330 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47380 * 120.00385 * 19 17 15 22 22 H 1.48503 * 109.47573 * 240.00439 * 19 17 15 23 23 C 1.46502 * 120.00058 * 4.32040 * 13 11 9 24 24 C 1.53005 * 109.47294 * 83.82862 * 23 13 11 25 25 C 1.47197 * 109.47476 * 184.46372 * 24 23 13 26 26 N 8.04101 * 114.49241 * 10.87901 * 2 1 3 27 27 H 1.09009 * 109.46733 * 299.99876 * 1 2 3 28 28 H 1.08994 * 109.47497 * 59.99380 * 1 2 3 29 29 H 1.08998 * 109.47549 * 180.02562 * 1 2 3 30 30 H 1.09002 * 113.61658 * 254.61286 * 7 5 3 31 31 H 1.08994 * 113.61466 * 25.52158 * 7 5 3 32 32 H 1.09002 * 113.61957 * 89.11829 * 8 7 5 33 33 H 1.09006 * 113.61068 * 219.93776 * 8 7 5 34 34 H 1.09006 * 109.47307 * 210.00573 * 14 13 11 35 35 H 1.09004 * 109.47133 * 329.99530 * 14 13 11 36 36 H 0.96999 * 119.99553 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.47369 * 203.83264 * 23 13 11 38 38 H 1.08999 * 109.46811 * 323.83362 * 23 13 11 39 39 H 1.08997 * 109.47247 * 304.47015 * 24 23 13 40 40 H 1.09009 * 109.46519 * 64.46604 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9973 1.1455 0.9922 7 6 4.2286 0.4001 -1.0782 8 6 5.2170 1.5575 -1.2983 9 6 4.1211 2.4919 -0.7592 10 1 4.4999 3.2780 -0.1061 11 6 3.1930 3.0125 -1.8263 12 8 3.0011 2.3632 -2.8326 13 7 2.5761 4.1995 -1.6624 14 6 1.6020 4.6619 -2.6540 15 6 0.2268 4.1796 -2.2704 16 1 0.0919 3.5880 -1.3769 17 6 -0.8592 4.4943 -3.0593 18 7 -0.6949 5.2150 -4.1470 19 14 -2.5637 3.8957 -2.5841 20 1 -2.4796 3.1095 -1.3270 21 1 -3.4587 5.0627 -2.3786 22 1 -3.1079 3.0394 -3.6684 23 6 2.8797 5.0274 -0.4925 24 6 4.1368 5.8556 -0.7661 25 6 4.5032 6.6064 0.4459 26 7 4.7856 7.1859 1.3811 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 4.6943 -0.5025 -0.6826 31 1 3.5867 0.2048 -1.9372 32 1 6.0993 1.5056 -0.6603 33 1 5.4621 1.7290 -2.3465 34 1 1.6083 5.7514 -2.6890 35 1 1.8656 4.2655 -3.6346 36 1 -1.4590 5.4361 -4.7023 37 1 2.0414 5.6948 -0.2922 38 1 3.0483 4.3861 0.3726 39 1 4.9557 5.1920 -1.0440 40 1 3.9421 6.5533 -1.5807 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285137686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:17 Heat of formation + Delta-G solvation = -88.327923 kcal Electronic energy + Delta-G solvation = -24971.491884 eV Core-core repulsion = 21365.935253 eV Total energy + Delta-G solvation = -3605.556631 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.20482 -40.59283 -38.53385 -37.82175 -37.29088 -36.53563 -34.81605 -32.16809 -29.73114 -29.44610 -27.28932 -27.15581 -25.26864 -24.54046 -22.46677 -21.49836 -19.39165 -18.83329 -18.59072 -18.31930 -18.00847 -17.64451 -17.29747 -16.67380 -16.07613 -15.80345 -15.63449 -15.56530 -14.99046 -14.55542 -14.35528 -14.18301 -14.03363 -13.68601 -13.58533 -13.51581 -13.26607 -13.19121 -12.92449 -12.77062 -12.70685 -12.56944 -12.30350 -12.15494 -11.93761 -11.79021 -11.73510 -11.53555 -11.29700 -11.07254 -10.58194 -10.39453 -9.37089 -8.15903 -6.24708 1.31703 1.32625 1.33722 1.46006 1.65778 1.79945 1.83659 1.89267 2.35381 2.45677 3.10611 3.15646 3.37391 3.59335 3.70728 3.87375 4.01760 4.08994 4.15400 4.25376 4.30250 4.33272 4.54269 4.57112 4.66231 4.79244 4.83385 4.92330 5.08064 5.08932 5.14935 5.19645 5.35019 5.50089 5.54140 5.71725 5.92375 6.20794 6.59762 6.77242 6.85628 6.97963 7.38676 7.57222 8.91258 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.007748 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.066691 B = 3613.149163 C = 5171.066629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.442 3.558 4 O -0.510 6.510 5 C -0.084 4.084 6 H 0.183 0.817 7 C -0.122 4.122 8 C -0.104 4.104 9 C -0.129 4.129 10 H 0.135 0.865 11 C 0.522 3.478 12 O -0.590 6.590 13 N -0.583 5.583 14 C 0.262 3.738 15 C -0.525 4.525 16 H 0.064 0.936 17 C 0.006 3.994 18 N -0.930 5.930 19 Si 0.951 3.049 20 H -0.272 1.272 21 H -0.274 1.274 22 H -0.283 1.283 23 C 0.120 3.880 24 C -0.038 4.038 25 C 0.246 3.754 26 N -0.485 5.485 27 H 0.062 0.938 28 H 0.031 0.969 29 H 0.135 0.865 30 H 0.112 0.888 31 H 0.056 0.944 32 H 0.141 0.859 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.002 0.998 36 H 0.262 0.738 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.139 0.861 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.367 -8.958 10.358 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.285 3.715 4 O -0.398 6.398 5 C -0.103 4.103 6 H 0.200 0.800 7 C -0.159 4.159 8 C -0.141 4.141 9 C -0.150 4.150 10 H 0.153 0.847 11 C 0.311 3.689 12 O -0.471 6.471 13 N -0.311 5.311 14 C 0.140 3.860 15 C -0.564 4.564 16 H 0.082 0.918 17 C -0.192 4.192 18 N -0.572 5.572 19 Si 0.777 3.223 20 H -0.196 1.196 21 H -0.199 1.199 22 H -0.209 1.209 23 C -0.005 4.005 24 C -0.079 4.079 25 C -0.071 4.071 26 N -0.163 5.163 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.153 0.847 30 H 0.130 0.870 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.020 0.980 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.156 0.844 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.329 -8.026 11.082 18.418 hybrid contribution -2.111 -0.007 -0.753 2.241 sum 10.217 -8.033 10.329 16.602 Atomic orbital electron populations 1.23346 0.76155 1.05072 1.01342 1.86437 1.23700 1.33536 1.84163 1.24502 0.93364 0.81448 0.72178 1.90821 1.67618 1.36778 1.44534 1.22779 0.85049 0.98254 1.04233 0.79995 1.22883 0.97668 0.98910 0.96475 1.22839 0.96139 0.92345 1.02776 1.22699 0.97053 0.98648 0.96596 0.84686 1.20505 0.80653 0.80626 0.87088 1.90638 1.66072 1.58022 1.32397 1.47821 1.40379 1.18865 1.24040 1.18758 0.86179 0.94021 0.86995 1.21975 0.93029 1.32129 1.09277 0.91791 1.25705 1.02725 0.95724 0.95050 1.70045 1.31756 1.39876 1.15485 0.85616 0.80348 0.78352 0.78028 1.19646 1.19918 1.20871 1.21359 0.96474 0.94221 0.88414 1.19887 0.99892 0.98690 0.89459 1.29067 0.91764 0.92431 0.93836 1.81238 1.10862 1.11470 1.12779 0.91906 0.94981 0.84744 0.86984 0.92513 0.84134 0.91449 0.95387 0.98017 0.92871 0.90619 0.88818 0.84358 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 10.56 113.37 1.20 2.19 16 2 O -0.36 -11.13 10.45 -51.33 -0.54 -11.67 16 3 C 0.44 14.40 6.75 71.24 0.48 14.88 16 4 O -0.51 -20.78 13.11 21.97 0.29 -20.49 16 5 C -0.08 -1.84 4.20 -11.01 -0.05 -1.88 16 6 H 0.18 2.15 8.14 -2.39 -0.02 2.13 16 7 C -0.12 -2.57 7.12 31.12 0.22 -2.34 16 8 C -0.10 -1.81 7.44 31.12 0.23 -1.58 16 9 C -0.13 -3.00 3.23 -11.02 -0.04 -3.04 16 10 H 0.14 2.16 5.60 -2.39 -0.01 2.15 16 11 C 0.52 19.63 4.84 87.66 0.42 20.06 16 12 O -0.59 -28.26 14.78 -3.05 -0.05 -28.31 16 13 N -0.58 -22.78 1.99 -826.14 -1.64 -24.42 16 14 C 0.26 13.50 5.16 85.63 0.44 13.95 16 15 C -0.53 -30.21 9.39 25.60 0.24 -29.97 16 16 H 0.06 3.78 6.22 -2.91 -0.02 3.76 16 17 C 0.01 0.33 5.46 84.65 0.46 0.80 16 18 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 19 Si 0.95 46.20 29.54 68.60 2.03 48.22 16 20 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 23 C 0.12 3.44 4.97 86.38 0.43 3.87 16 24 C -0.04 -0.75 5.73 28.79 0.16 -0.59 16 25 C 0.25 5.53 15.43 89.44 1.38 6.91 16 26 N -0.49 -13.58 18.54 20.00 0.37 -13.21 16 27 H 0.06 1.73 8.13 -2.38 -0.02 1.71 16 28 H 0.03 1.14 8.13 -2.39 -0.02 1.12 16 29 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.74 7.17 -2.39 -0.02 1.72 16 32 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.47 7.93 -2.38 -0.02 1.45 16 34 H 0.03 1.45 8.07 -2.38 -0.02 1.43 16 35 H 0.00 0.10 7.37 -2.39 -0.02 0.09 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.08 2.44 8.03 -2.39 -0.02 2.42 16 38 H 0.09 2.34 6.54 -2.39 -0.02 2.33 16 39 H 0.14 1.93 7.44 -2.39 -0.02 1.92 16 40 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -83.12 342.94 7.39 -75.72 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.06 Total: 6.95 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: 5.59 Total: 23.25 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -0.99 Total: -93.67 kcal Atomic # 8 Polarization: -60.18 SS G_CDS: -0.29 Total: -60.47 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -83.12 7.39 -75.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285137686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.605 kcal (2) G-P(sol) polarization free energy of solvation -83.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds