Wall clock time and date at job start Fri Apr 10 2020 17:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47076 * 234.26108 * 3 2 1 5 5 C 1.37104 * 119.99834 * 267.66907 * 4 3 2 6 6 H 1.07999 * 119.99942 * 179.38543 * 5 4 3 7 7 C 1.38943 * 119.99998 * 359.37592 * 5 4 3 8 8 N 1.31419 * 120.00068 * 228.51869 * 7 5 4 9 9 Si 1.86802 * 120.00205 * 48.51802 * 7 5 4 10 10 H 1.48506 * 109.46841 * 270.00084 * 9 7 5 11 11 H 1.48501 * 109.46938 * 29.99569 * 9 7 5 12 12 H 1.48491 * 109.47358 * 149.99860 * 9 7 5 13 13 C 1.34775 * 120.00144 * 87.66716 * 4 3 2 14 14 O 1.21302 * 120.00008 * 175.13309 * 13 4 3 15 15 C 1.50700 * 120.00074 * 355.12738 * 13 4 3 16 16 H 1.09000 * 110.55117 * 46.68993 * 15 13 4 17 17 C 1.55003 * 110.61849 * 283.64009 * 15 13 4 18 18 C 1.54812 * 102.08963 * 204.47267 * 17 15 13 19 19 C 1.54097 * 104.18948 * 20.88088 * 18 17 15 20 20 H 1.09002 * 109.88193 * 242.60427 * 19 18 17 21 21 C 1.50699 * 109.88111 * 121.45073 * 19 18 17 22 22 O 1.21281 * 120.00226 * 245.71489 * 21 19 18 23 23 N 1.34780 * 119.99988 * 65.71417 * 21 19 18 24 24 C 1.46501 * 120.00234 * 179.97438 * 23 21 19 25 25 C 1.46504 * 119.99674 * 0.02562 * 23 21 19 26 26 O 1.43747 * 107.29539 * 2.03030 * 19 18 17 27 27 H 4.40640 * 5.51426 * 179.97438 * 4 1 2 28 28 H 1.08999 * 109.46871 * 114.26001 * 3 2 1 29 29 H 1.08995 * 109.47019 * 354.25982 * 3 2 1 30 30 H 0.97002 * 119.99812 * 354.97336 * 8 7 5 31 31 H 1.09004 * 110.90428 * 322.67130 * 17 15 13 32 32 H 1.09000 * 110.90698 * 86.27578 * 17 15 13 33 33 H 1.08993 * 110.49014 * 262.20364 * 18 17 15 34 34 H 1.08998 * 110.48448 * 139.55204 * 18 17 15 35 35 H 1.08999 * 109.46773 * 89.99817 * 24 23 21 36 36 H 1.08992 * 109.46993 * 210.00220 * 24 23 21 37 37 H 1.08998 * 109.47295 * 330.00217 * 24 23 21 38 38 H 1.09002 * 109.47055 * 90.00011 * 25 23 21 39 39 H 1.08997 * 109.47158 * 209.99754 * 25 23 21 40 40 H 1.08998 * 109.46959 * 330.00392 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.8076 1.1211 5 6 3.4075 2.1388 0.9396 6 1 3.7577 2.7360 1.7685 7 6 3.2341 2.7195 -0.3107 8 7 4.1858 3.4644 -0.8268 9 14 1.6484 2.4413 -1.2580 10 1 1.7875 1.2348 -2.1127 11 1 0.5289 2.2444 -0.3024 12 1 1.3681 3.6233 -2.1121 13 6 3.3141 0.2415 2.3308 14 8 3.8010 0.8861 3.2357 15 6 2.9106 -1.1924 2.5593 16 1 3.2696 -1.8250 1.7475 17 6 1.3721 -1.3094 2.7076 18 6 1.2239 -2.6117 3.5314 19 6 2.5979 -2.7905 4.2058 20 1 3.0631 -3.7137 3.8602 21 6 2.4330 -2.8259 5.7033 22 8 2.9003 -1.9391 6.3860 23 7 1.7663 -3.8432 6.2840 24 6 1.6065 -3.8780 7.7399 25 6 1.2024 -4.9148 5.4594 26 8 3.4082 -1.6644 3.8298 27 1 -1.0501 0.0000 -0.0003 28 1 3.0092 0.4231 -0.9369 29 1 3.0098 -1.0216 0.1028 30 1 4.9780 3.6689 -0.3058 31 1 0.9678 -0.4563 3.2524 32 1 0.8939 -1.4090 1.7331 33 1 1.0079 -3.4553 2.8760 34 1 0.4418 -2.5010 4.2826 35 1 0.6890 -3.3590 8.0171 36 1 1.5536 -4.9138 8.0749 37 1 2.4581 -3.3869 8.2107 38 1 1.9406 -5.7077 5.3395 39 1 0.3130 -5.3168 5.9446 40 1 0.9341 -4.5171 4.4807 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288337981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:25 Heat of formation + Delta-G solvation = -42.393660 kcal Electronic energy + Delta-G solvation = -24544.149250 eV Core-core repulsion = 20940.584479 eV Total energy + Delta-G solvation = -3603.564772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.82849 -40.70011 -39.12224 -37.27274 -36.69120 -34.86969 -33.44127 -33.24087 -31.61411 -28.82677 -28.33416 -27.65828 -26.45296 -24.41166 -22.96633 -20.99609 -20.55700 -20.27630 -18.85107 -18.64660 -17.89245 -17.76013 -17.22916 -17.12853 -16.41390 -16.13136 -15.94192 -15.62390 -15.37976 -14.81520 -14.62388 -14.39434 -14.31805 -14.20697 -13.87252 -13.60099 -13.44547 -13.12507 -12.95740 -12.76687 -12.68445 -12.43394 -12.33220 -12.01330 -11.73670 -11.48327 -11.36716 -10.83483 -10.62809 -10.48543 -10.37130 -10.07208 -9.73581 -9.27901 -5.97163 1.26762 1.43774 1.44565 1.55872 1.65793 1.74032 1.92532 1.99746 2.23809 2.46252 2.83761 3.12464 3.31084 3.48143 3.57603 3.73423 3.83586 3.92582 4.03148 4.22357 4.32022 4.38655 4.39995 4.48268 4.49212 4.59787 4.71903 4.79262 4.87832 4.89573 4.99403 5.01746 5.10230 5.43892 5.59138 5.64148 5.90286 6.23506 6.27366 6.66768 7.01107 7.08433 7.20866 7.86240 8.12630 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.004452 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.076362 B = 6287.618192 C = 6924.787994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.250 4.250 3 C 0.181 3.819 4 N -0.438 5.438 5 C -0.470 4.470 6 H 0.038 0.962 7 C 0.002 3.998 8 N -0.844 5.844 9 Si 1.078 2.922 10 H -0.237 1.237 11 H -0.250 1.250 12 H -0.295 1.295 13 C 0.429 3.571 14 O -0.632 6.632 15 C 0.074 3.926 16 H 0.124 0.876 17 C -0.138 4.138 18 C -0.126 4.126 19 C 0.049 3.951 20 H 0.136 0.864 21 C 0.498 3.502 22 O -0.585 6.585 23 N -0.615 5.615 24 C 0.081 3.919 25 C 0.057 3.943 26 O -0.371 6.371 27 H 0.261 0.739 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.268 0.732 31 H 0.042 0.958 32 H 0.126 0.874 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.110 0.890 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.860 -24.784 1.900 28.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.251 4.251 3 C 0.060 3.940 4 N -0.157 5.157 5 C -0.595 4.595 6 H 0.056 0.944 7 C -0.207 4.207 8 N -0.474 5.474 9 Si 0.897 3.103 10 H -0.161 1.161 11 H -0.173 1.173 12 H -0.223 1.223 13 C 0.220 3.780 14 O -0.519 6.519 15 C 0.013 3.987 16 H 0.142 0.858 17 C -0.176 4.176 18 C -0.163 4.163 19 C -0.012 4.012 20 H 0.153 0.847 21 C 0.286 3.714 22 O -0.464 6.464 23 N -0.350 5.350 24 C -0.061 4.061 25 C -0.084 4.084 26 O -0.289 6.289 27 H 0.277 0.723 28 H 0.117 0.883 29 H 0.150 0.850 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.851 -23.589 1.414 27.911 hybrid contribution 1.537 1.005 2.075 2.770 sum -13.314 -22.584 3.489 26.448 Atomic orbital electron populations 1.25744 0.96443 0.97015 0.97319 1.23401 0.95189 1.03490 1.03064 1.18971 0.85428 0.98041 0.91597 1.43805 1.56051 1.08211 1.07601 1.19798 1.53520 0.87568 0.98625 0.94412 1.27695 1.03093 0.95051 0.94853 1.70986 1.05462 1.37281 1.33626 0.84094 0.72876 0.77604 0.75710 1.16099 1.17341 1.22314 1.20599 0.84925 0.90205 0.82296 1.90534 1.50243 1.66723 1.44442 1.23068 0.95931 0.91762 0.87906 0.85837 1.23243 0.92496 0.98358 1.03456 1.23089 0.94274 0.99035 0.99948 1.23084 0.94681 0.92280 0.91131 0.84681 1.21176 0.77712 0.81552 0.90945 1.90733 1.50202 1.39327 1.66110 1.47836 1.54739 1.23814 1.08604 1.21770 1.01455 1.04100 0.78769 1.22423 1.00309 0.89100 0.96530 1.89117 1.54506 1.47897 1.37425 0.72326 0.88304 0.85017 0.92163 0.93865 0.85578 0.83187 0.89332 0.92261 0.87191 0.93541 0.90481 0.88129 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 16.23 74.32 1.21 -2.40 16 2 C -0.25 -7.92 7.22 31.13 0.22 -7.70 16 3 C 0.18 6.77 4.88 84.58 0.41 7.19 16 4 N -0.44 -22.55 2.58 -645.42 -1.67 -24.22 16 5 C -0.47 -28.85 9.51 84.04 0.80 -28.05 16 6 H 0.04 2.76 7.40 -2.91 -0.02 2.74 16 7 C 0.00 0.12 4.83 84.92 0.41 0.53 16 8 N -0.84 -49.88 13.69 21.66 0.30 -49.58 16 9 Si 1.08 45.86 23.26 68.60 1.60 47.46 16 10 H -0.24 -8.43 6.17 99.48 0.61 -7.81 16 11 H -0.25 -9.87 5.41 99.48 0.54 -9.34 16 12 H -0.30 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.43 23.04 6.95 87.66 0.61 23.65 16 14 O -0.63 -42.86 16.19 14.89 0.24 -42.61 16 15 C 0.07 2.79 2.91 30.53 0.09 2.88 16 16 H 0.12 3.53 6.63 -2.39 -0.02 3.52 16 17 C -0.14 -3.95 5.81 31.90 0.19 -3.76 16 18 C -0.13 -2.34 4.71 31.58 0.15 -2.19 16 19 C 0.05 1.32 3.04 30.22 0.09 1.41 16 20 H 0.14 2.41 7.99 -2.39 -0.02 2.39 16 21 C 0.50 15.66 6.86 87.66 0.60 16.27 16 22 O -0.58 -26.71 16.11 15.68 0.25 -26.45 16 23 N -0.62 -12.05 3.27 -871.89 -2.85 -14.90 16 24 C 0.08 1.41 10.44 127.77 1.33 2.74 16 25 C 0.06 0.42 10.02 127.77 1.28 1.70 16 26 O -0.37 -15.82 10.04 -121.28 -1.22 -17.04 16 27 H 0.26 3.63 7.80 -4.41 -0.03 3.60 16 28 H 0.10 3.87 4.88 -2.39 -0.01 3.86 16 29 H 0.13 3.68 6.27 -2.39 -0.01 3.66 16 30 H 0.27 16.36 8.73 -92.71 -0.81 15.56 16 31 H 0.04 1.57 8.05 -2.38 -0.02 1.55 16 32 H 0.13 2.83 4.94 -2.39 -0.01 2.82 16 33 H 0.15 1.02 7.54 -2.39 -0.02 1.00 16 34 H 0.09 1.56 7.44 -2.39 -0.02 1.54 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.11 0.98 8.07 -2.39 -0.02 0.96 16 37 H 0.05 1.10 7.42 -2.39 -0.02 1.08 16 38 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.10 0.27 8.07 -2.39 -0.02 0.25 16 40 H 0.09 0.46 4.44 -2.39 -0.01 0.45 16 Total: -1.00 -102.86 319.19 4.80 -98.06 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.76 Total: 17.03 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 7.39 Total: 12.27 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -4.22 Total: -88.71 kcal Atomic # 8 Polarization: -85.38 SS G_CDS: -0.72 Total: -86.10 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.60 Total: 47.46 kcal Total: -102.86 4.80 -98.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288337981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.669 kcal (2) G-P(sol) polarization free energy of solvation -102.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds