Wall clock time and date at job start Fri Apr 10 2020 17:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34893 * 116.99844 * 2 1 4 4 O 1.21618 * 120.00536 * 0.02562 * 3 2 1 5 5 C 1.46475 * 119.99571 * 180.02562 * 3 2 1 6 6 O 1.34934 * 125.99996 * 5.54149 * 5 3 2 7 7 C 1.33913 * 109.38412 * 180.27263 * 6 5 3 8 8 C 1.35171 * 108.77877 * 359.73017 * 7 6 5 9 9 C 1.36647 * 125.99313 * 185.35304 * 5 3 2 10 10 C 1.50697 * 126.64898 * 359.97438 * 9 5 3 11 11 N 1.46900 * 109.47269 * 286.35597 * 10 9 5 12 12 C 1.46897 * 111.00091 * 183.00982 * 11 10 9 13 13 C 1.53243 * 109.34053 * 187.25089 * 12 11 10 14 14 N 1.47073 * 108.52407 * 306.17176 * 13 12 11 15 15 C 1.36935 * 120.88305 * 231.18956 * 14 13 12 16 16 H 1.07998 * 120.00149 * 35.75842 * 15 14 13 17 17 C 1.38813 * 119.99834 * 215.49156 * 15 14 13 18 18 N 1.31618 * 120.00238 * 4.31162 * 17 15 14 19 19 Si 1.86803 * 119.99812 * 184.31274 * 17 15 14 20 20 H 1.48497 * 109.47461 * 59.99493 * 19 17 15 21 21 H 1.48496 * 109.46960 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46671 * 299.99832 * 19 17 15 23 23 C 1.47085 * 118.23960 * 51.45352 * 14 13 12 24 24 C 1.46904 * 110.99779 * 307.30888 * 11 10 9 25 25 H 1.08994 * 109.47613 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47136 * 300.00090 * 1 2 3 27 27 H 1.08999 * 109.47067 * 59.99846 * 1 2 3 28 28 H 1.07998 * 125.60905 * 179.73179 * 7 6 5 29 29 H 1.07994 * 126.44016 * 180.02562 * 8 7 6 30 30 H 1.08999 * 109.47337 * 166.35502 * 10 9 5 31 31 H 1.09000 * 109.47396 * 46.35486 * 10 9 5 32 32 H 1.09004 * 109.49642 * 67.29480 * 12 11 10 33 33 H 1.08996 * 109.51365 * 307.22192 * 12 11 10 34 34 H 1.08994 * 109.62846 * 186.45482 * 13 12 11 35 35 H 1.09011 * 109.78693 * 65.97245 * 13 12 11 36 36 H 0.96999 * 119.99948 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.62615 * 68.25184 * 23 14 13 38 38 H 1.09001 * 109.63142 * 188.83610 * 23 14 13 39 39 H 1.08997 * 109.49558 * 292.70654 * 24 11 10 40 40 H 1.09003 * 109.49513 * 52.76359 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4021 2.2219 0.0005 5 6 3.5271 1.2785 -0.0006 6 8 4.3759 0.2349 -0.1065 7 6 5.6375 0.6821 -0.0640 8 6 5.6182 2.0275 0.0647 9 6 4.2716 2.4197 0.1025 10 6 3.7478 3.8264 0.2367 11 7 3.2053 4.2721 -1.0537 12 6 2.7495 5.6666 -0.9798 13 6 2.0296 6.0349 -2.2815 14 7 2.9215 5.7312 -3.4108 15 6 3.1808 6.6697 -4.3737 16 1 3.2602 7.7124 -4.1041 17 6 3.3470 6.2800 -5.6956 18 7 3.1717 5.0212 -6.0377 19 14 3.8194 7.5423 -6.9891 20 1 5.1229 8.1558 -6.6293 21 1 3.9330 6.8769 -8.3117 22 1 2.7768 8.5979 -7.0545 23 6 3.5230 4.3909 -3.4817 24 6 4.1888 4.0893 -2.1296 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 6.5244 0.0686 -0.1228 29 1 6.4778 2.6784 0.1264 30 1 4.5590 4.4890 0.5381 31 1 2.9601 3.8505 0.9897 32 1 3.6085 6.3232 -0.8409 33 1 2.0642 5.7816 -0.1401 34 1 1.7905 7.0983 -2.2794 35 1 1.1121 5.4535 -2.3730 36 1 3.2882 4.7489 -6.9614 37 1 2.7478 3.6520 -3.6844 38 1 4.2718 4.3669 -4.2735 39 1 5.0277 4.7678 -1.9747 40 1 4.5476 3.0600 -2.1234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330600430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:41 Heat of formation + Delta-G solvation = -46.444790 kcal Electronic energy + Delta-G solvation = -24505.141959 eV Core-core repulsion = 20901.401517 eV Total energy + Delta-G solvation = -3603.740442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.77504 -41.12335 -39.68179 -37.56919 -36.46861 -34.45440 -32.94306 -31.61393 -31.47789 -29.34201 -28.34655 -26.51497 -24.66993 -24.21812 -23.76465 -22.49308 -21.06917 -20.65627 -19.26795 -18.68152 -17.96547 -17.81302 -17.05112 -16.97331 -16.69163 -16.14859 -15.87371 -15.38693 -15.23634 -14.96964 -14.90457 -14.79497 -14.20118 -14.08177 -13.84182 -13.43113 -13.09764 -13.04055 -12.95679 -12.82373 -12.65900 -12.34909 -12.07749 -11.93382 -11.80086 -11.72178 -11.69172 -11.44981 -10.80270 -10.59669 -9.72147 -9.16507 -8.56241 -7.87974 -5.45007 -0.16645 1.31241 1.37575 1.45790 1.48738 1.55539 1.82456 2.16161 2.49253 3.09430 3.29715 3.60993 3.69187 3.79033 3.90891 4.28360 4.30873 4.33539 4.34670 4.38157 4.44221 4.50700 4.61905 4.66831 4.68345 4.73851 4.84756 4.88657 4.97633 5.05955 5.18598 5.23624 5.32389 5.34618 5.60661 5.65850 5.84181 6.22283 6.27437 6.41616 6.67506 7.14257 7.80452 8.41014 9.18360 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019138 B = 0.004399 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.735726 B = 6363.720397 C = 6675.812673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.540 3.460 4 O -0.483 6.483 5 C -0.082 4.082 6 O -0.163 6.163 7 C 0.029 3.971 8 C -0.234 4.234 9 C -0.074 4.074 10 C 0.121 3.879 11 N -0.530 5.530 12 C 0.060 3.940 13 C 0.147 3.853 14 N -0.613 5.613 15 C -0.271 4.271 16 H 0.066 0.934 17 C -0.045 4.045 18 N -0.938 5.938 19 Si 0.975 3.025 20 H -0.273 1.273 21 H -0.293 1.293 22 H -0.275 1.275 23 C 0.194 3.806 24 C 0.058 3.942 25 H 0.136 0.864 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.263 0.737 29 H 0.180 0.820 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.030 0.970 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.006 0.994 36 H 0.251 0.749 37 H -0.014 1.014 38 H 0.054 0.946 39 H 0.024 0.976 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 -10.435 16.284 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.280 6.280 3 C 0.384 3.616 4 O -0.371 6.371 5 C -0.133 4.133 6 O -0.058 6.058 7 C -0.041 4.041 8 C -0.253 4.253 9 C -0.076 4.076 10 C -0.006 4.006 11 N -0.255 5.255 12 C -0.069 4.069 13 C 0.021 3.979 14 N -0.337 5.337 15 C -0.401 4.401 16 H 0.084 0.916 17 C -0.241 4.241 18 N -0.583 5.583 19 Si 0.802 3.198 20 H -0.199 1.199 21 H -0.219 1.219 22 H -0.201 1.201 23 C 0.068 3.932 24 C -0.072 4.072 25 H 0.154 0.846 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.279 0.721 29 H 0.197 0.803 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.024 0.976 36 H 0.060 0.940 37 H 0.004 0.996 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.001 -10.777 15.991 19.516 hybrid contribution 0.499 1.120 -0.923 1.535 sum 3.500 -9.657 15.069 18.237 Atomic orbital electron populations 1.23582 0.73944 1.05883 1.02676 1.86615 1.25533 1.31516 1.84361 1.19372 0.86089 0.82265 0.73865 1.90999 1.64537 1.36102 1.45478 1.20465 0.87987 0.86549 1.18253 1.84135 1.16908 1.34755 1.70021 1.25428 0.85325 0.95451 0.97871 1.22065 0.96398 0.96571 1.10259 1.20670 0.93817 0.94645 0.98479 1.20545 0.98336 0.89664 0.92042 1.61880 1.38416 1.21657 1.03538 1.22403 0.98679 0.87258 0.98510 1.21093 0.91686 0.97985 0.87100 1.44287 1.52004 1.11519 1.25869 1.19465 1.43511 0.89873 0.87241 0.91650 1.26128 1.00539 0.98141 0.99301 1.70139 1.53893 1.17012 1.17279 0.85250 0.78473 0.78324 0.77783 1.19898 1.21855 1.20054 1.20595 0.94431 0.85094 0.93040 1.22606 0.92708 0.99180 0.92657 0.84587 0.91146 0.92610 0.72121 0.80285 0.92604 0.89513 0.95141 0.89422 0.91882 0.97627 0.93967 0.99629 0.92727 0.95803 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.57 113.37 1.20 1.86 16 2 O -0.36 -10.29 10.58 -56.75 -0.60 -10.89 16 3 C 0.54 17.74 7.92 69.97 0.55 18.30 16 4 O -0.48 -18.04 14.67 19.45 0.29 -17.76 16 5 C -0.08 -2.49 7.18 24.05 0.17 -2.32 16 6 O -0.16 -4.13 10.67 -4.91 -0.05 -4.18 16 7 C 0.03 0.49 12.08 67.11 0.81 1.30 16 8 C -0.23 -4.88 10.40 22.07 0.23 -4.65 16 9 C -0.07 -2.09 3.98 -19.73 -0.08 -2.17 16 10 C 0.12 3.70 4.62 85.56 0.40 4.09 16 11 N -0.53 -20.38 4.27 -898.86 -3.84 -24.22 16 12 C 0.06 2.29 5.62 86.39 0.49 2.78 16 13 C 0.15 6.80 6.69 86.35 0.58 7.37 16 14 N -0.61 -33.31 3.01 -697.22 -2.10 -35.41 16 15 C -0.27 -15.57 9.58 84.03 0.81 -14.76 16 16 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 17 C -0.05 -2.62 5.17 84.86 0.44 -2.18 16 18 N -0.94 -57.68 11.07 21.65 0.24 -57.44 16 19 Si 0.97 45.73 29.56 68.60 2.03 47.76 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 23 C 0.19 10.34 5.35 86.50 0.46 10.80 16 24 C 0.06 2.42 5.38 86.54 0.47 2.89 16 25 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.26 1.46 8.06 -2.91 -0.02 1.44 16 29 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 2.64 7.51 -2.39 -0.02 2.62 16 32 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 2.88 8.11 -2.39 -0.02 2.86 16 34 H 0.06 2.74 7.95 -2.39 -0.02 2.72 16 35 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 36 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 37 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 38 H 0.05 3.18 6.39 -2.39 -0.02 3.17 16 39 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 2.66 6.28 -2.39 -0.01 2.64 16 Total: -1.00 -75.46 333.29 3.52 -71.94 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.04 Total: 6.91 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 6.52 Total: 23.30 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -5.70 Total: -117.07 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.37 Total: -32.84 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -75.46 3.52 -71.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330600430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.492 kcal (2) G-P(sol) polarization free energy of solvation -75.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds