Wall clock time and date at job start Fri Apr 10 2020 17:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99930 * 2 1 4 4 C 1.50697 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.35128 * 125.61804 * 90.00178 * 4 3 2 6 6 C 1.40362 * 107.12055 * 180.02562 * 5 4 3 7 7 C 1.36550 * 106.70555 * 359.97438 * 6 5 4 8 8 C 1.46656 * 125.98782 * 179.97438 * 7 6 5 9 9 O 1.21693 * 120.00188 * 353.40113 * 8 7 6 10 10 N 1.34777 * 119.99746 * 173.39995 * 8 7 6 11 11 C 1.46965 * 120.59801 * 4.55880 * 10 8 7 12 12 C 1.53365 * 108.63713 * 235.20459 * 11 10 8 13 13 N 1.46963 * 108.63762 * 310.57932 * 12 11 10 14 14 C 1.36939 * 120.59314 * 235.20377 * 13 12 11 15 15 H 1.07992 * 119.99736 * 148.55422 * 14 13 12 16 16 C 1.38813 * 119.99945 * 328.55541 * 14 13 12 17 17 N 1.31619 * 119.99909 * 350.14447 * 16 14 13 18 18 Si 1.86790 * 120.00054 * 170.14065 * 16 14 13 19 19 H 1.48509 * 109.47258 * 270.00087 * 18 16 14 20 20 H 1.48503 * 109.47266 * 29.99857 * 18 16 14 21 21 H 1.48498 * 109.47353 * 150.00096 * 18 16 14 22 22 C 1.46967 * 118.81040 * 55.47196 * 13 12 11 23 23 C 1.46964 * 120.58966 * 184.53797 * 10 8 7 24 24 O 1.33934 * 125.61610 * 270.29808 * 4 3 2 25 25 H 1.09001 * 109.46794 * 299.99726 * 1 2 3 26 26 H 1.09005 * 109.47122 * 59.99180 * 1 2 3 27 27 H 1.08995 * 109.47001 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46705 * 60.00469 * 3 2 1 29 29 H 1.08994 * 109.47744 * 300.00357 * 3 2 1 30 30 H 1.08002 * 126.43788 * 0.02562 * 5 4 3 31 31 H 1.07992 * 126.65246 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.60963 * 115.46002 * 11 10 8 33 33 H 1.09001 * 109.60467 * 354.95365 * 11 10 8 34 34 H 1.08995 * 109.60870 * 190.82959 * 12 11 10 35 35 H 1.09004 * 109.60628 * 70.31837 * 12 11 10 36 36 H 0.96999 * 119.99927 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.60970 * 64.27578 * 22 13 12 38 38 H 1.09005 * 109.60641 * 184.77734 * 22 13 12 39 39 H 1.09004 * 109.60913 * 244.53605 * 23 10 8 40 40 H 1.08995 * 109.61357 * 5.05207 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2966 1.1246 -1.0994 6 6 5.6237 1.0189 -0.6547 7 6 5.5817 1.0222 0.7102 8 6 6.7375 0.9295 1.6081 9 8 7.8464 0.7192 1.1530 10 7 6.5716 1.0774 2.9375 11 6 5.2273 1.2323 3.5109 12 6 5.1938 2.5222 4.3399 13 7 6.3539 2.5310 5.2420 14 6 6.1854 2.6812 6.5927 15 1 6.8740 2.2101 7.2784 16 6 5.1296 3.4390 7.0803 17 7 4.4080 4.1693 6.2566 18 14 4.7327 3.4224 8.9055 19 1 3.7600 2.3370 9.1907 20 1 5.9775 3.1878 9.6806 21 1 4.1450 4.7289 9.2963 22 6 7.6986 2.3817 4.6680 23 6 7.7317 1.0861 3.8395 24 8 4.2901 1.1191 1.0878 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6887 1.8463 0.8901 29 1 1.6887 1.8465 -0.8899 30 1 3.9645 1.1515 -2.1268 31 1 6.5069 0.9493 -1.2722 32 1 5.0025 0.3797 4.1516 33 1 4.4922 1.2939 2.7084 34 1 4.2750 2.5570 4.9252 35 1 5.2404 3.3852 3.6757 36 1 3.6705 4.6991 6.5974 37 1 7.9194 3.2349 4.0267 38 1 8.4344 2.3238 5.4701 39 1 7.6852 0.2231 4.5038 40 1 8.6506 1.0513 3.2543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330932856.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:47 Heat of formation + Delta-G solvation = -15.092101 kcal Electronic energy + Delta-G solvation = -24127.774450 eV Core-core repulsion = 20525.393563 eV Total energy + Delta-G solvation = -3602.380887 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.71905 -39.37055 -38.04448 -36.86099 -34.04017 -33.09089 -31.67929 -30.99869 -30.15912 -27.82010 -26.81909 -25.66272 -23.80097 -23.02399 -21.93297 -21.48334 -20.38660 -19.29369 -17.57081 -17.02744 -16.61619 -16.08500 -16.00821 -15.88714 -15.59200 -14.78653 -14.56505 -14.20838 -13.81530 -13.62111 -13.44440 -13.38763 -12.99920 -12.90457 -12.78412 -12.41330 -12.10077 -11.69435 -11.55023 -11.12523 -10.87076 -10.71789 -10.53646 -10.24536 -10.08160 -10.05200 -9.98573 -9.92516 -9.66304 -8.68573 -8.59293 -8.25588 -6.69040 -5.86744 -3.37576 1.09674 2.24698 2.58511 3.31692 3.34061 3.39334 3.40650 3.47135 3.77695 4.41658 4.53209 4.72810 4.87759 4.99263 5.01798 5.09580 5.16279 5.31233 5.33664 5.41768 5.61696 5.71350 5.78792 5.83637 5.90333 5.97982 6.13482 6.24701 6.36987 6.42475 6.51743 6.75615 6.77220 6.92561 6.98508 7.22033 7.48933 7.69111 7.80028 8.35535 8.37264 9.11074 9.71348 10.29783 11.20234 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014412 B = 0.004803 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.421842 B = 5827.881394 C = 7432.161062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.139 3.861 4 C -0.004 4.004 5 C -0.193 4.193 6 C -0.133 4.133 7 C -0.050 4.050 8 C 0.591 3.409 9 O -0.540 6.540 10 N -0.583 5.583 11 C 0.063 3.937 12 C 0.160 3.840 13 N -0.592 5.592 14 C -0.256 4.256 15 H 0.067 0.933 16 C 0.005 3.995 17 N -0.906 5.906 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.278 1.278 21 H -0.290 1.290 22 C 0.131 3.869 23 C 0.095 3.905 24 O -0.140 6.140 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.154 0.846 31 H 0.160 0.840 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.023 0.977 36 H 0.256 0.744 37 H 0.025 0.975 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 -5.802 -13.190 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.063 3.937 4 C -0.056 4.056 5 C -0.212 4.212 6 C -0.153 4.153 7 C -0.102 4.102 8 C 0.378 3.622 9 O -0.421 6.421 10 N -0.313 5.313 11 C -0.060 4.060 12 C 0.033 3.967 13 N -0.315 5.315 14 C -0.385 4.385 15 H 0.085 0.915 16 C -0.193 4.193 17 N -0.550 5.550 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.203 1.203 21 H -0.216 1.216 22 C 0.004 3.996 23 C -0.029 4.029 24 O -0.037 6.037 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.172 0.828 31 H 0.177 0.823 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.041 0.959 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.723 -5.941 -12.993 15.390 hybrid contribution -0.548 0.326 0.762 0.993 sum -6.271 -5.615 -12.231 14.847 Atomic orbital electron populations 1.22801 0.80140 1.03212 1.00375 1.87983 1.20214 1.26724 1.95535 1.20740 0.84375 0.85842 1.02775 1.22403 0.92976 1.04932 0.85278 1.21539 0.92424 1.07817 0.99448 1.21871 0.98406 1.02190 0.92874 1.22308 0.82156 1.11093 0.94674 1.16782 0.85759 0.78071 0.81571 1.90811 1.23489 1.51864 1.75925 1.48035 1.09738 1.68441 1.05071 1.23320 0.81715 1.02327 0.98623 1.21216 0.93796 0.90331 0.91320 1.44003 0.99227 1.84776 1.03494 1.19231 1.12545 1.24964 0.81773 0.91483 1.25198 1.00080 0.96143 0.97915 1.69939 1.21544 1.29848 1.33657 0.86207 0.78308 0.76997 0.84730 1.21319 1.20325 1.21623 1.21416 0.89495 0.93136 0.95553 1.22416 0.87705 1.00636 0.92104 1.84337 1.16493 1.69940 1.32883 0.93453 0.93791 0.89259 0.90700 0.89789 0.82790 0.82251 0.91562 0.88428 0.87735 0.95928 0.93433 0.95686 0.91224 0.91459 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.43 10.69 -35.23 -0.38 -4.81 16 3 C 0.14 1.45 6.46 36.00 0.23 1.68 16 4 C 0.00 -0.06 6.94 -35.42 -0.25 -0.31 16 5 C -0.19 -2.41 10.77 -39.89 -0.43 -2.84 16 6 C -0.13 -1.94 10.63 -39.39 -0.42 -2.36 16 7 C -0.05 -0.86 6.86 -36.80 -0.25 -1.11 16 8 C 0.59 11.43 7.66 -12.86 -0.10 11.33 16 9 O -0.54 -11.27 16.29 5.19 0.08 -11.19 16 10 N -0.58 -11.43 2.95 -173.77 -0.51 -11.94 16 11 C 0.06 1.24 6.49 -3.60 -0.02 1.22 16 12 C 0.16 3.76 5.46 -3.60 -0.02 3.74 16 13 N -0.59 -14.65 2.96 -171.77 -0.51 -15.16 16 14 C -0.26 -6.82 9.58 -15.06 -0.14 -6.96 16 15 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 16 C 0.01 0.14 5.07 -17.43 -0.09 0.05 16 17 N -0.91 -25.44 10.97 55.49 0.61 -24.83 16 18 Si 0.91 21.09 29.56 -169.99 -5.03 16.07 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.13 2.78 6.70 -3.37 -0.02 2.75 16 23 C 0.09 1.80 6.60 -3.37 -0.02 1.78 16 24 O -0.14 -2.29 7.06 4.97 0.04 -2.26 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.10 1.82 3.71 -55.56 -0.21 1.61 16 34 H 0.10 2.69 5.99 -51.93 -0.31 2.38 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 1.39 7.93 -51.93 -0.41 0.97 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.52 7.01 -51.93 -0.36 1.16 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -31.69 332.24 -6.60 -38.28 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.49 Total: 0.50 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -0.42 Total: 10.32 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.41 Total: -51.93 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.26 Total: -18.26 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.69 -6.60 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330932856.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.191 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds