Wall clock time and date at job start Fri Apr 10 2020 17:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86801 * 120.00046 * 2 1 4 4 H 1.48499 * 109.47398 * 270.00120 * 3 2 1 5 5 H 1.48501 * 109.47024 * 30.00388 * 3 2 1 6 6 H 1.48504 * 109.46869 * 149.99842 * 3 2 1 7 7 C 1.40129 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00213 * 179.97438 * 7 2 1 9 9 C 1.46116 * 119.99874 * 0.02562 * 7 2 1 10 10 O 1.21761 * 120.00129 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99633 * 180.02562 * 9 7 2 12 12 C 1.39675 * 119.99503 * 179.97438 * 11 9 7 13 13 C 1.40516 * 125.99087 * 359.97438 * 12 11 9 14 14 C 1.35179 * 107.87934 * 180.02562 * 13 12 11 15 15 N 1.35069 * 107.89792 * 359.97438 * 14 13 12 16 16 C 1.46504 * 125.96741 * 179.97438 * 15 14 13 17 17 C 1.53006 * 109.46883 * 125.00110 * 16 15 14 18 18 N 1.46898 * 109.47006 * 180.02562 * 17 16 15 19 19 C 1.47015 * 110.99629 * 293.63553 * 18 17 16 20 20 C 1.53099 * 109.25444 * 177.60965 * 19 18 17 21 21 O 1.43020 * 109.25921 * 56.85026 * 20 19 18 22 22 C 1.43018 * 113.73692 * 301.32545 * 21 20 19 23 23 C 1.47012 * 110.99820 * 170.00535 * 18 17 16 24 24 N 1.31418 * 125.98662 * 180.33763 * 12 11 9 25 25 H 0.96992 * 120.00218 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00608 * 359.97438 * 11 9 7 27 27 H 1.07994 * 126.06553 * 0.02562 * 13 12 11 28 28 H 1.07995 * 126.05356 * 179.97438 * 14 13 12 29 29 H 1.09001 * 109.46891 * 5.00545 * 16 15 14 30 30 H 1.08993 * 109.47378 * 244.99917 * 16 15 14 31 31 H 1.09001 * 109.46801 * 300.00349 * 17 16 15 32 32 H 1.09001 * 109.46998 * 59.99945 * 17 16 15 33 33 H 1.09004 * 109.50787 * 297.53890 * 19 18 17 34 34 H 1.08995 * 109.50754 * 57.68018 * 19 18 17 35 35 H 1.09001 * 109.50741 * 296.91648 * 20 19 18 36 36 H 1.09003 * 109.54691 * 176.80502 * 20 19 18 37 37 H 1.08992 * 109.51039 * 298.73989 * 22 21 20 38 38 H 1.08999 * 109.54416 * 178.62484 * 22 21 20 39 39 H 1.09004 * 109.50451 * 302.32320 * 23 18 17 40 40 H 1.08994 * 109.50994 * 62.40703 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0465 -1.4000 5 1 1.4378 2.6526 0.7001 6 1 3.5379 1.4401 0.7001 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2136 -0.0010 9 6 1.2764 -2.4789 -0.0017 10 8 0.0588 -2.4789 -0.0017 11 7 1.9504 -3.6461 -0.0017 12 6 1.2519 -4.8557 -0.0022 13 6 -0.1456 -5.0023 -0.0023 14 6 -0.4241 -6.3251 -0.0023 15 7 0.7481 -6.9961 -0.0028 16 6 0.9058 -8.4527 -0.0025 17 6 1.7826 -8.8709 -1.1846 18 7 1.9403 -10.3314 -1.1846 19 6 2.7076 -10.7785 -0.0130 20 6 2.7966 -12.3069 -0.0210 21 8 3.3854 -12.7387 -1.2508 22 6 2.6633 -12.3212 -2.4126 23 6 2.5730 -10.7930 -2.4288 24 7 1.7867 -6.0562 0.0040 25 1 -0.4850 0.8400 -0.0004 26 1 2.9203 -3.6462 -0.0013 27 1 -0.8689 -4.2005 -0.0023 28 1 -1.4094 -6.7672 -0.0020 29 1 -0.0730 -8.9241 -0.0914 30 1 1.3773 -8.7669 0.9286 31 1 1.3112 -8.5566 -2.1157 32 1 2.7614 -8.3995 -1.0957 33 1 3.7113 -10.3553 -0.0522 34 1 2.2076 -10.4479 0.8973 35 1 1.7965 -12.7302 0.0721 36 1 3.4124 -12.6407 0.8142 37 1 1.6594 -12.7449 -2.3890 38 1 3.1824 -12.6646 -3.3074 39 1 1.9747 -10.4728 -3.2819 40 1 3.5742 -10.3693 -2.5069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331066417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:49 Heat of formation + Delta-G solvation = 12.603016 kcal Electronic energy + Delta-G solvation = -22878.382924 eV Core-core repulsion = 19309.495738 eV Total energy + Delta-G solvation = -3568.887186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.53376 -39.81903 -37.48025 -36.41659 -33.77273 -32.58334 -32.01456 -31.47526 -29.34339 -28.70173 -26.73691 -25.64326 -24.38357 -22.57229 -21.29478 -20.66631 -20.37737 -18.97437 -17.26088 -17.09311 -16.50687 -16.34852 -15.72135 -15.43170 -15.39624 -15.24761 -14.92039 -14.27303 -14.24699 -13.95730 -13.52665 -12.92148 -12.74004 -12.67331 -12.40524 -12.16383 -12.06327 -11.75575 -11.64106 -11.32224 -11.22282 -11.08815 -10.86966 -10.63985 -10.33362 -10.06093 -9.91298 -9.66747 -8.93677 -8.76892 -8.05569 -7.72001 -7.17448 -6.34661 -4.81477 2.47726 2.79228 3.08240 3.15597 3.19123 3.46478 3.59524 3.67187 4.01285 4.46400 4.52636 4.58331 4.61117 4.63766 4.78022 4.80785 4.95700 5.03895 5.13523 5.23229 5.30126 5.33592 5.45232 5.48615 5.52205 5.66116 5.69280 5.73040 6.13094 6.49331 6.56086 6.56912 6.69064 6.78084 7.21323 7.32116 7.58888 7.70678 8.06364 8.13972 8.45795 8.85936 9.31814 10.39495 10.57336 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.039992 B = 0.002491 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.971405 B =11236.749147 C =11554.324329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.087 3.913 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.073 0.927 9 C 0.551 3.449 10 O -0.555 6.555 11 N -0.658 5.658 12 C 0.331 3.669 13 C -0.258 4.258 14 C 0.044 3.956 15 N -0.391 5.391 16 C 0.154 3.846 17 C 0.045 3.955 18 N -0.536 5.536 19 C 0.011 3.989 20 C 0.064 3.936 21 O -0.387 6.387 22 C 0.065 3.935 23 C 0.018 3.982 24 N -0.363 5.363 25 H 0.272 0.728 26 H 0.396 0.604 27 H 0.174 0.826 28 H 0.165 0.835 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.030 -20.927 -2.046 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.134 4.134 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.356 3.644 10 O -0.435 6.435 11 N -0.307 5.307 12 C 0.074 3.926 13 C -0.289 4.289 14 C -0.100 4.100 15 N -0.176 5.176 16 C 0.031 3.969 17 C -0.084 4.084 18 N -0.262 5.262 19 C -0.117 4.117 20 C -0.013 4.013 21 O -0.306 6.306 22 C -0.012 4.012 23 C -0.110 4.110 24 N -0.196 5.196 25 H 0.083 0.917 26 H 0.229 0.771 27 H 0.191 0.809 28 H 0.183 0.817 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.716 -21.831 -2.018 22.092 hybrid contribution 0.728 1.775 -0.049 1.919 sum 3.443 -20.056 -2.067 20.454 Atomic orbital electron populations 1.69976 1.07143 1.27834 1.33774 1.25731 0.94727 1.00484 0.92495 0.86254 0.80122 0.80779 0.78987 1.19570 1.20292 1.18741 1.20775 0.93875 0.88596 1.53871 0.90836 1.18375 0.87430 0.81476 0.77073 1.90533 1.13675 1.85513 1.53784 1.43552 1.09395 1.01973 1.75789 1.19586 0.91671 0.86745 0.94593 1.22126 0.95742 0.95831 1.15156 1.22490 0.91090 0.92841 1.03541 1.47848 1.03587 1.04595 1.61620 1.21305 1.01516 0.75580 0.98514 1.22368 1.00339 0.86254 0.99408 1.62171 1.49618 1.11986 1.02416 1.22902 0.97372 0.96760 0.94687 1.22676 0.98991 0.92657 0.86935 1.87989 1.52067 1.76256 1.14250 1.22664 0.97193 0.92694 0.88674 1.22784 0.98599 0.96692 0.92951 1.77323 1.10373 0.96226 1.35637 0.91700 0.77111 0.80870 0.81742 0.88522 0.90882 0.90066 0.92819 0.93504 0.89241 0.92181 0.88386 0.92176 0.88400 0.89425 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.80 11.82 55.55 0.66 -21.14 16 2 C 0.09 2.33 5.50 -17.35 -0.10 2.24 16 3 Si 0.91 19.43 29.56 -169.99 -5.02 14.41 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.53 -14.62 9.53 -35.71 -0.34 -14.96 16 8 H 0.07 1.83 7.85 -52.48 -0.41 1.42 16 9 C 0.55 15.45 7.70 -13.10 -0.10 15.34 16 10 O -0.55 -17.10 12.13 5.13 0.06 -17.03 16 11 N -0.66 -15.80 5.43 -12.51 -0.07 -15.87 16 12 C 0.33 7.61 8.10 -154.66 -1.25 6.36 16 13 C -0.26 -5.69 9.60 -39.81 -0.38 -6.07 16 14 C 0.04 0.75 11.43 -17.22 -0.20 0.56 16 15 N -0.39 -6.54 3.68 -61.37 -0.23 -6.76 16 16 C 0.15 1.82 6.44 -4.04 -0.03 1.80 16 17 C 0.04 0.51 5.15 -3.82 -0.02 0.49 16 18 N -0.54 -5.17 4.73 -234.30 -1.11 -6.27 16 19 C 0.01 0.10 5.44 -3.71 -0.02 0.08 16 20 C 0.06 0.51 7.01 37.21 0.26 0.77 16 21 O -0.39 -3.79 10.83 -35.23 -0.38 -4.17 16 22 C 0.06 0.51 7.01 37.21 0.26 0.77 16 23 C 0.02 0.16 5.64 -3.71 -0.02 0.14 16 24 N -0.36 -7.40 12.45 31.39 0.39 -7.01 16 25 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 26 H 0.40 8.42 8.80 -40.82 -0.36 8.06 16 27 H 0.17 4.30 5.90 -52.49 -0.31 3.99 16 28 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 29 H 0.10 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.07 0.82 6.52 -51.93 -0.34 0.48 16 31 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 32 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.71 6.38 -51.93 -0.33 0.38 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -34.00 333.45 -8.13 -42.13 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.52 Total: 9.20 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -1.93 Total: 7.50 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.35 Total: -57.05 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.32 Total: -21.21 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.00 -8.13 -42.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331066417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.732 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds