Wall clock time and date at job start Fri Apr 10 2020 17:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86801 * 120.00046 * 2 1 4 4 H 1.48499 * 109.47398 * 270.00120 * 3 2 1 5 5 H 1.48501 * 109.47024 * 30.00388 * 3 2 1 6 6 H 1.48504 * 109.46869 * 149.99842 * 3 2 1 7 7 C 1.40129 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00213 * 179.97438 * 7 2 1 9 9 C 1.46116 * 119.99874 * 0.02562 * 7 2 1 10 10 O 1.21761 * 120.00129 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99633 * 180.02562 * 9 7 2 12 12 C 1.39675 * 119.99503 * 179.97438 * 11 9 7 13 13 C 1.40516 * 125.99087 * 359.97438 * 12 11 9 14 14 C 1.35179 * 107.87934 * 180.02562 * 13 12 11 15 15 N 1.35069 * 107.89792 * 359.97438 * 14 13 12 16 16 C 1.46504 * 125.96741 * 179.97438 * 15 14 13 17 17 C 1.53006 * 109.46883 * 125.00110 * 16 15 14 18 18 N 1.46898 * 109.47006 * 180.02562 * 17 16 15 19 19 C 1.47015 * 110.99629 * 293.63553 * 18 17 16 20 20 C 1.53099 * 109.25444 * 177.60965 * 19 18 17 21 21 O 1.43020 * 109.25921 * 56.85026 * 20 19 18 22 22 C 1.43018 * 113.73692 * 301.32545 * 21 20 19 23 23 C 1.47012 * 110.99820 * 170.00535 * 18 17 16 24 24 N 1.31418 * 125.98662 * 180.33763 * 12 11 9 25 25 H 0.96992 * 120.00218 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00608 * 359.97438 * 11 9 7 27 27 H 1.07994 * 126.06553 * 0.02562 * 13 12 11 28 28 H 1.07995 * 126.05356 * 179.97438 * 14 13 12 29 29 H 1.09001 * 109.46891 * 5.00545 * 16 15 14 30 30 H 1.08993 * 109.47378 * 244.99917 * 16 15 14 31 31 H 1.09001 * 109.46801 * 300.00349 * 17 16 15 32 32 H 1.09001 * 109.46998 * 59.99945 * 17 16 15 33 33 H 1.09004 * 109.50787 * 297.53890 * 19 18 17 34 34 H 1.08995 * 109.50754 * 57.68018 * 19 18 17 35 35 H 1.09001 * 109.50741 * 296.91648 * 20 19 18 36 36 H 1.09003 * 109.54691 * 176.80502 * 20 19 18 37 37 H 1.08992 * 109.51039 * 298.73989 * 22 21 20 38 38 H 1.08999 * 109.54416 * 178.62484 * 22 21 20 39 39 H 1.09004 * 109.50451 * 302.32320 * 23 18 17 40 40 H 1.08994 * 109.50994 * 62.40703 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0465 -1.4000 5 1 1.4378 2.6526 0.7001 6 1 3.5379 1.4401 0.7001 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2136 -0.0010 9 6 1.2764 -2.4789 -0.0017 10 8 0.0588 -2.4789 -0.0017 11 7 1.9504 -3.6461 -0.0017 12 6 1.2519 -4.8557 -0.0022 13 6 -0.1456 -5.0023 -0.0023 14 6 -0.4241 -6.3251 -0.0023 15 7 0.7481 -6.9961 -0.0028 16 6 0.9058 -8.4527 -0.0025 17 6 1.7826 -8.8709 -1.1846 18 7 1.9403 -10.3314 -1.1846 19 6 2.7076 -10.7785 -0.0130 20 6 2.7966 -12.3069 -0.0210 21 8 3.3854 -12.7387 -1.2508 22 6 2.6633 -12.3212 -2.4126 23 6 2.5730 -10.7930 -2.4288 24 7 1.7867 -6.0562 0.0040 25 1 -0.4850 0.8400 -0.0004 26 1 2.9203 -3.6462 -0.0013 27 1 -0.8689 -4.2005 -0.0023 28 1 -1.4094 -6.7672 -0.0020 29 1 -0.0730 -8.9241 -0.0914 30 1 1.3773 -8.7669 0.9286 31 1 1.3112 -8.5566 -2.1157 32 1 2.7614 -8.3995 -1.0957 33 1 3.7113 -10.3553 -0.0522 34 1 2.2076 -10.4479 0.8973 35 1 1.7965 -12.7302 0.0721 36 1 3.4124 -12.6407 0.8142 37 1 1.6594 -12.7449 -2.3890 38 1 3.1824 -12.6646 -3.3074 39 1 1.9747 -10.4728 -3.2819 40 1 3.5742 -10.3693 -2.5069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331066417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:49 Heat of formation + Delta-G solvation = -13.686950 kcal Electronic energy + Delta-G solvation = -22879.522942 eV Core-core repulsion = 19309.495738 eV Total energy + Delta-G solvation = -3570.027204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.06126 -40.56832 -39.43428 -37.29449 -35.50216 -34.56850 -33.42740 -32.16736 -30.90769 -29.90999 -28.54608 -26.81210 -25.05886 -23.83860 -22.92346 -21.84930 -21.41373 -20.73416 -19.16552 -18.25637 -17.52739 -17.42627 -17.19959 -16.68946 -16.46034 -16.12090 -15.98759 -15.92941 -15.49460 -15.02949 -14.83323 -14.61202 -14.22711 -14.02398 -13.64965 -13.43468 -13.20309 -13.11546 -12.80251 -12.72827 -12.59355 -12.35927 -12.11297 -12.01591 -11.60757 -11.51595 -11.32010 -10.92846 -10.70239 -9.85855 -9.65993 -9.58673 -8.89351 -8.36943 -6.94882 0.97115 1.40041 1.42385 1.49293 1.59624 1.91858 2.22983 2.53978 2.59858 2.92283 3.00833 3.59456 3.66676 3.73548 3.90424 3.94994 4.07760 4.17148 4.23075 4.28578 4.32474 4.40618 4.54676 4.68377 4.75357 4.79754 4.81453 4.88955 4.93788 4.99733 5.05024 5.25470 5.50426 5.68798 5.73134 5.80699 6.08721 6.16306 6.28900 6.32659 6.71165 6.80026 7.42131 8.33258 8.56758 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.039992 B = 0.002491 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.971405 B =11236.749147 C =11554.324329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.031 3.969 3 Si 1.003 2.997 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.250 1.250 7 C -0.562 4.562 8 H 0.092 0.908 9 C 0.536 3.464 10 O -0.594 6.594 11 N -0.657 5.657 12 C 0.299 3.701 13 C -0.310 4.310 14 C 0.084 3.916 15 N -0.375 5.375 16 C 0.146 3.854 17 C 0.055 3.945 18 N -0.529 5.529 19 C 0.009 3.991 20 C 0.064 3.936 21 O -0.408 6.408 22 C 0.066 3.934 23 C 0.016 3.984 24 N -0.368 5.368 25 H 0.279 0.721 26 H 0.405 0.595 27 H 0.138 0.862 28 H 0.219 0.781 29 H 0.134 0.866 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.027 0.973 33 H 0.030 0.970 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.388 -22.587 -1.983 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.185 4.185 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.173 1.173 7 C -0.598 4.598 8 H 0.110 0.890 9 C 0.342 3.658 10 O -0.477 6.477 11 N -0.306 5.306 12 C 0.044 3.956 13 C -0.341 4.341 14 C -0.062 4.062 15 N -0.159 5.159 16 C 0.026 3.974 17 C -0.074 4.074 18 N -0.255 5.255 19 C -0.119 4.119 20 C -0.012 4.012 21 O -0.327 6.327 22 C -0.011 4.011 23 C -0.113 4.113 24 N -0.201 5.201 25 H 0.090 0.910 26 H 0.240 0.760 27 H 0.156 0.844 28 H 0.236 0.764 29 H 0.152 0.848 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.130 0.870 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.129 -23.565 -1.956 23.852 hybrid contribution 0.592 2.030 -0.078 2.116 sum 3.721 -21.535 -2.034 21.948 Atomic orbital electron populations 1.70123 1.09464 1.29524 1.34736 1.26986 0.95629 1.04841 0.91080 0.84930 0.78708 0.74637 0.79521 1.18508 1.19496 1.17295 1.21305 0.94993 0.89110 1.54352 0.88968 1.18743 0.87278 0.82884 0.76885 1.90511 1.15210 1.86504 1.55519 1.43125 1.09722 1.01992 1.75751 1.19756 0.92251 0.86951 0.96682 1.21909 0.94973 0.97458 1.19763 1.22998 0.92970 0.91020 0.99256 1.48280 1.02783 1.06021 1.58824 1.21778 1.03935 0.72434 0.99292 1.22170 0.98769 0.87476 0.98998 1.62224 1.49825 1.10304 1.03131 1.22979 0.96507 0.97611 0.94777 1.22794 0.99877 0.91704 0.86851 1.87967 1.53011 1.76508 1.15201 1.22777 0.97836 0.91716 0.88784 1.22868 0.97939 0.97534 0.92916 1.77250 1.11878 0.95829 1.35180 0.91046 0.76037 0.84439 0.76435 0.84765 0.89497 0.90519 0.95499 0.95172 0.88062 0.91107 0.86956 0.91234 0.86871 0.88430 0.95076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.05 11.82 21.85 0.26 -47.79 16 2 C 0.03 1.71 5.50 85.33 0.47 2.18 16 3 Si 1.00 39.87 29.56 68.60 2.03 41.90 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.56 -31.51 9.53 24.77 0.24 -31.28 16 8 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 9 C 0.54 31.54 7.70 86.29 0.66 32.20 16 10 O -0.59 -38.82 12.13 -4.54 -0.06 -38.88 16 11 N -0.66 -32.97 5.43 -311.70 -1.69 -34.66 16 12 C 0.30 14.16 8.10 133.46 1.08 15.24 16 13 C -0.31 -14.08 9.60 22.12 0.21 -13.87 16 14 C 0.08 2.71 11.43 83.49 0.95 3.67 16 15 N -0.37 -11.74 3.68 -348.07 -1.28 -13.02 16 16 C 0.15 2.98 6.44 86.38 0.56 3.54 16 17 C 0.05 1.15 5.15 86.31 0.44 1.60 16 18 N -0.53 -9.01 4.73 -895.19 -4.23 -13.24 16 19 C 0.01 0.15 5.44 86.31 0.47 0.62 16 20 C 0.06 0.87 7.01 72.02 0.50 1.37 16 21 O -0.41 -7.20 10.83 -148.98 -1.61 -8.82 16 22 C 0.07 0.88 7.01 72.02 0.50 1.39 16 23 C 0.02 0.25 5.64 86.32 0.49 0.73 16 24 N -0.37 -14.98 12.45 -54.59 -0.68 -15.66 16 25 H 0.28 14.91 8.29 -92.71 -0.77 14.14 16 26 H 0.41 17.94 8.80 -92.71 -0.82 17.13 16 27 H 0.14 7.30 5.90 -2.91 -0.02 7.28 16 28 H 0.22 4.57 8.06 -2.91 -0.02 4.55 16 29 H 0.13 1.87 8.07 -2.39 -0.02 1.85 16 30 H 0.09 1.64 6.52 -2.39 -0.02 1.62 16 31 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 32 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 33 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.10 1.32 6.38 -2.39 -0.02 1.31 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.34 8.09 -2.38 -0.02 1.32 16 40 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -78.55 333.45 -0.43 -78.98 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.25 Total: 33.81 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 6.58 Total: 17.38 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -7.62 Total: -124.37 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -1.67 Total: -47.69 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -78.55 -0.43 -78.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331066417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.294 kcal (2) G-P(sol) polarization free energy of solvation -78.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds