Wall clock time and date at job start Fri Apr 10 2020 17:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36598 * 126.57905 * 2 1 4 4 C 1.47519 * 125.77527 * 0.02562 * 3 2 1 5 5 O 1.21601 * 119.99552 * 0.24048 * 4 3 2 6 6 N 1.34773 * 120.00254 * 180.24137 * 4 3 2 7 7 C 1.47062 * 136.05574 * 359.63055 * 6 4 3 8 8 C 1.53760 * 87.88992 * 152.96251 * 7 6 4 9 9 O 1.42894 * 114.39501 * 272.67526 * 8 7 6 10 10 C 1.50700 * 114.26893 * 139.78753 * 8 7 6 11 11 H 1.07996 * 120.00006 * 266.47878 * 10 8 7 12 12 C 1.37880 * 119.99555 * 86.47720 * 10 8 7 13 13 N 1.31511 * 120.00427 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99610 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47248 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46880 * 119.99887 * 14 12 10 17 17 H 1.48497 * 109.47298 * 240.00166 * 14 12 10 18 18 C 1.47071 * 136.05907 * 179.97438 * 6 4 3 19 19 N 1.34407 * 108.45346 * 180.23702 * 3 2 1 20 20 N 1.28756 * 109.52436 * 359.77661 * 19 3 2 21 21 N 1.34812 * 126.57963 * 179.85011 * 2 1 3 22 22 C 1.46500 * 126.59324 * 0.03343 * 21 2 1 23 23 C 1.53000 * 109.47023 * 239.70938 * 22 21 2 24 24 C 1.52997 * 109.47007 * 119.71145 * 22 21 2 25 25 H 1.09008 * 109.46971 * 270.15545 * 1 2 3 26 26 H 1.08996 * 109.47111 * 30.14816 * 1 2 3 27 27 H 1.08995 * 109.47596 * 150.15574 * 1 2 3 28 28 H 1.09001 * 113.46916 * 267.68869 * 7 6 4 29 29 H 1.09000 * 113.47456 * 38.13833 * 7 6 4 30 30 H 0.96704 * 114.00474 * 273.58553 * 9 8 7 31 31 H 0.96999 * 119.99918 * 179.97438 * 13 12 10 32 32 H 1.09006 * 113.46469 * 321.86767 * 18 6 4 33 33 H 1.08998 * 113.46559 * 92.24415 * 18 6 4 34 34 H 1.09002 * 109.47092 * 359.71196 * 22 21 2 35 35 H 1.09004 * 109.46724 * 60.00549 * 23 22 21 36 36 H 1.09001 * 109.47194 * 179.97438 * 23 22 21 37 37 H 1.08992 * 109.47399 * 300.00063 * 23 22 21 38 38 H 1.09002 * 109.47153 * 60.00089 * 24 22 21 39 39 H 1.08998 * 109.47533 * 179.97438 * 24 22 21 40 40 H 1.08996 * 109.47853 * 300.00060 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 0.0005 5 8 0.6860 2.7628 0.0055 6 7 2.7818 3.4987 -0.0044 7 6 4.2493 3.5937 -0.0044 8 6 4.1047 4.9521 -0.7102 9 8 4.0273 4.8717 -2.1348 10 6 5.0640 6.0078 -0.2244 11 1 4.7644 6.6918 0.5558 12 6 6.3243 6.1004 -0.7760 13 7 6.6893 5.2671 -1.7257 14 14 7.5132 7.4095 -0.1743 15 1 6.8653 8.2139 0.8927 16 1 8.7327 6.7587 0.3686 17 1 7.8871 8.2962 -1.3053 18 6 2.7410 4.9689 -0.0062 19 7 3.5984 0.6788 -0.0053 20 7 3.6298 -0.6084 -0.0038 21 7 2.3104 -1.0826 0.0028 22 6 1.8863 -2.4849 0.0058 23 6 2.4345 -3.1808 1.2532 24 6 2.4236 -3.1828 -1.2452 25 1 -0.3633 0.0028 1.0277 26 1 -0.3633 0.8886 -0.5161 27 1 -0.3634 -0.8913 -0.5114 28 1 4.6795 3.6674 0.9944 29 1 4.7337 2.8338 -0.6176 30 1 4.8880 4.8613 -2.5755 31 1 7.5758 5.3325 -2.1140 32 1 1.9402 5.3801 -0.6209 33 1 2.7721 5.4051 0.9922 34 1 0.7974 -2.5351 0.0106 35 1 2.0516 -2.6835 2.1445 36 1 2.1186 -4.2240 1.2557 37 1 3.5233 -3.1305 1.2485 38 1 3.5124 -3.1325 -1.2500 39 1 2.1085 -4.2262 -1.2428 40 1 2.0332 -2.6871 -2.1339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331478937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:00 Heat of formation + Delta-G solvation = 45.965454 kcal Electronic energy + Delta-G solvation = -24027.473400 eV Core-core repulsion = 20460.032919 eV Total energy + Delta-G solvation = -3567.440482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.07315 -39.31159 -37.27100 -36.45827 -33.93877 -32.91533 -32.09143 -30.96138 -28.90581 -27.70951 -27.40665 -25.30047 -24.92340 -23.90207 -22.40566 -20.25934 -19.92478 -18.36754 -17.49076 -16.92664 -16.04201 -15.94766 -15.51746 -15.01782 -14.65112 -14.46046 -14.11506 -14.00941 -13.57494 -13.23614 -13.09300 -12.99157 -12.64884 -12.63524 -12.47247 -12.26310 -11.93927 -11.84166 -11.80087 -11.47621 -11.45493 -11.01791 -10.96766 -10.72478 -10.38495 -10.13484 -10.06145 -9.67323 -9.17649 -8.90797 -8.69146 -8.25572 -7.72852 -6.30634 -4.40702 1.29795 2.07323 2.11149 3.20122 3.28939 3.32738 3.59207 3.82872 4.09701 4.25993 4.32217 4.44119 4.54769 4.72487 4.87434 4.96364 5.06351 5.12834 5.22933 5.32082 5.35699 5.44643 5.60503 5.68464 5.74766 5.78699 5.89828 6.04313 6.16327 6.28324 6.51370 6.56421 6.71410 6.76347 7.00759 7.22736 7.72399 7.90606 8.21187 8.52721 8.62552 8.82717 9.30069 9.59627 10.76211 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.024478 B = 0.003897 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.607561 B = 7183.695345 C = 7822.904808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.111 3.889 3 C -0.087 4.087 4 C 0.620 3.380 5 O -0.564 6.564 6 N -0.617 5.617 7 C 0.081 3.919 8 C 0.237 3.763 9 O -0.572 6.572 10 C -0.532 4.532 11 H 0.073 0.927 12 C 0.072 3.928 13 N -0.896 5.896 14 Si 0.908 3.092 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.110 3.890 19 N -0.189 5.189 20 N -0.073 5.073 21 N -0.363 5.363 22 C 0.145 3.855 23 C -0.161 4.161 24 C -0.163 4.163 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.394 0.606 31 H 0.273 0.727 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.720 -16.033 3.613 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.026 4.026 3 C -0.227 4.227 4 C 0.408 3.592 5 O -0.445 6.445 6 N -0.348 5.348 7 C -0.042 4.042 8 C 0.195 3.805 9 O -0.385 6.385 10 C -0.571 4.571 11 H 0.091 0.909 12 C -0.131 4.131 13 N -0.536 5.536 14 Si 0.735 3.265 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.012 4.012 19 N -0.062 5.062 20 N -0.053 5.053 21 N -0.150 5.150 22 C 0.044 3.956 23 C -0.219 4.219 24 C -0.221 4.221 25 H 0.106 0.894 26 H 0.130 0.870 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.250 0.750 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.457 -16.540 3.601 18.923 hybrid contribution 0.401 0.531 0.232 0.705 sum -8.056 -16.009 3.833 18.327 Atomic orbital electron populations 1.20659 0.85061 1.05021 1.04278 1.21833 0.96030 0.86452 0.98309 1.21275 0.88849 0.95353 1.17181 1.16163 0.84370 0.81627 0.77068 1.90681 1.15650 1.83485 1.54693 1.49463 1.09680 1.07067 1.68560 1.24260 0.77282 1.01463 1.01192 1.19615 0.89948 0.90591 0.80306 1.86026 1.37748 1.96379 1.18317 1.21453 0.97723 1.16504 1.21377 0.90902 1.25076 0.98025 0.95676 0.94287 1.69284 1.21217 1.36763 1.26370 0.86274 0.80327 0.81040 0.78823 1.19442 1.20691 1.20690 1.23372 0.99863 0.77828 1.00168 1.74778 1.19090 1.03440 1.08913 1.81927 0.96107 1.03765 1.23451 1.50597 1.06537 1.06884 1.50996 1.21558 1.00249 0.75700 0.98119 1.22142 1.03268 1.00616 0.95910 1.22157 1.03378 1.00607 0.95939 0.89429 0.86958 0.91158 0.90321 0.90644 0.74975 0.91681 0.91406 0.89522 0.87555 0.91806 0.90134 0.90667 0.90644 0.90137 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.40 36.01 0.34 -0.69 16 2 C 0.11 1.69 7.02 -81.88 -0.57 1.11 16 3 C -0.09 -1.70 6.97 -83.55 -0.58 -2.28 16 4 C 0.62 13.61 8.07 -12.48 -0.10 13.51 16 5 O -0.56 -12.64 15.50 5.28 0.08 -12.56 16 6 N -0.62 -14.16 3.69 -186.30 -0.69 -14.85 16 7 C 0.08 1.92 7.20 -8.37 -0.06 1.86 16 8 C 0.24 5.98 1.58 -91.13 -0.14 5.83 16 9 O -0.57 -15.45 13.54 -35.23 -0.48 -15.93 16 10 C -0.53 -13.76 8.70 -34.44 -0.30 -14.06 16 11 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 12 C 0.07 1.84 5.39 -17.82 -0.10 1.75 16 13 N -0.90 -23.62 11.01 55.43 0.61 -23.01 16 14 Si 0.91 19.93 29.54 -169.99 -5.02 14.91 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 C 0.11 2.49 8.02 -8.52 -0.07 2.42 16 19 N -0.19 -3.83 10.80 32.85 0.35 -3.48 16 20 N -0.07 -1.28 13.67 60.35 0.82 -0.45 16 21 N -0.36 -4.94 3.28 -50.41 -0.17 -5.10 16 22 C 0.15 1.24 3.68 -67.93 -0.25 0.99 16 23 C -0.16 -1.18 9.47 37.16 0.35 -0.83 16 24 C -0.16 -1.24 9.47 37.16 0.35 -0.89 16 25 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 26 H 0.11 1.51 6.44 -51.93 -0.33 1.18 16 27 H 0.07 0.54 7.19 -51.93 -0.37 0.17 16 28 H 0.08 1.80 8.10 -51.93 -0.42 1.38 16 29 H 0.08 1.89 7.42 -51.93 -0.39 1.51 16 30 H 0.39 10.77 6.33 45.56 0.29 11.06 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 33 H 0.09 1.78 8.10 -51.93 -0.42 1.36 16 34 H 0.11 0.64 6.79 -51.93 -0.35 0.28 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -31.21 338.94 -5.43 -36.64 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.93 Total: 10.00 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -1.13 Total: 8.72 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.94 Total: -46.88 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.40 Total: -28.49 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.21 -5.43 -36.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331478937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.603 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds