Wall clock time and date at job start Fri Apr 10 2020 17:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40197 * 120.36430 * 2 1 4 4 C 1.35354 * 119.94549 * 180.02562 * 3 2 1 5 5 N 1.35762 * 120.70391 * 0.02562 * 4 3 2 6 6 C 1.46499 * 119.62393 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47280 * 270.02606 * 6 5 4 8 8 C 1.52992 * 109.47069 * 60.00116 * 7 6 5 9 9 O 1.42907 * 109.46838 * 299.99860 * 7 6 5 10 10 C 1.50700 * 109.47045 * 180.02562 * 7 6 5 11 11 O 1.21282 * 119.99974 * 334.99742 * 10 7 6 12 12 N 1.34772 * 120.00030 * 154.99919 * 10 7 6 13 13 C 1.46504 * 120.00305 * 180.02562 * 12 10 7 14 14 C 1.50691 * 109.47432 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00438 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00089 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99791 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00025 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47014 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46776 * 119.99902 * 18 16 14 21 21 H 1.48496 * 109.46849 * 240.00446 * 18 16 14 22 22 C 1.34662 * 120.74915 * 0.02562 * 5 4 3 23 23 O 1.22063 * 119.98236 * 179.97438 * 22 5 4 24 24 C 1.36396 * 120.37105 * 180.30333 * 2 1 3 25 25 H 1.08997 * 109.47315 * 90.00084 * 1 2 3 26 26 H 1.08998 * 109.47188 * 210.00035 * 1 2 3 27 27 H 1.09003 * 109.47460 * 330.00126 * 1 2 3 28 28 H 1.07998 * 120.02681 * 359.97438 * 3 2 1 29 29 H 1.07997 * 119.64643 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46933 * 30.02667 * 6 5 4 31 31 H 1.09000 * 109.46763 * 150.02264 * 6 5 4 32 32 H 1.08997 * 109.47635 * 60.00178 * 8 7 6 33 33 H 1.09000 * 109.46938 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47457 * 299.99856 * 8 7 6 35 35 H 0.96692 * 113.99883 * 299.99862 * 9 7 6 36 36 H 0.97002 * 120.00388 * 359.97438 * 12 10 7 37 37 H 1.08999 * 109.46450 * 300.00335 * 13 12 10 38 38 H 1.09007 * 109.46715 * 59.99627 * 13 12 10 39 39 H 0.97001 * 119.99590 * 179.97438 * 17 16 14 40 40 H 1.08004 * 120.34808 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2156 1.2097 0.0000 4 6 3.5691 1.1998 -0.0005 5 7 4.2538 0.0274 -0.0016 6 6 5.7187 0.0443 -0.0027 7 6 6.2276 0.0515 -1.4456 8 6 5.7027 1.2954 -2.1652 9 8 5.7642 -1.1202 -2.1199 10 6 7.7345 0.0683 -1.4467 11 8 8.3366 0.5179 -0.4947 12 7 8.4130 -0.4164 -2.5055 13 6 9.8780 -0.4006 -2.5063 14 6 10.3860 -0.9946 -3.7947 15 1 9.6876 -1.3481 -4.5388 16 6 11.7425 -1.0858 -4.0242 17 7 12.5930 -0.6549 -3.1183 18 14 12.3723 -1.8214 -5.6216 19 1 11.2210 -2.2271 -6.4674 20 1 13.1856 -0.8112 -6.3449 21 1 13.2106 -3.0100 -5.3226 22 6 3.6016 -1.1507 -0.0026 23 8 4.2313 -2.1965 -0.0040 24 6 2.1966 -1.1768 -0.0062 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6820 2.1486 -0.0004 29 1 4.1102 2.1344 -0.0001 30 1 6.0721 0.9380 0.5117 31 1 6.0926 -0.8418 0.5101 32 1 6.0561 2.1891 -1.6510 33 1 6.0649 1.3003 -3.1933 34 1 4.6127 1.2829 -2.1645 35 1 6.0594 -1.9482 -1.7173 36 1 7.9315 -0.7763 -3.2667 37 1 10.2302 0.6269 -2.4156 38 1 10.2481 -0.9872 -1.6654 39 1 13.5473 -0.7194 -3.2796 40 1 1.6683 -2.1188 -0.0108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344442732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:43 Heat of formation + Delta-G solvation = -96.804098 kcal Electronic energy + Delta-G solvation = -23834.111571 eV Core-core repulsion = 20228.187385 eV Total energy + Delta-G solvation = -3605.924185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.63755 -39.52811 -37.09286 -36.82929 -35.22712 -34.28638 -32.32512 -31.63541 -30.24647 -29.08004 -27.38231 -26.53564 -23.90298 -23.64663 -22.11550 -21.28212 -19.69860 -18.44825 -17.62368 -17.15248 -16.60085 -16.13529 -15.98530 -15.38105 -15.06235 -14.73902 -14.49408 -14.39186 -14.14732 -13.72611 -13.62688 -13.21040 -12.93299 -12.61282 -12.53527 -12.35067 -12.13494 -12.00540 -11.95343 -11.81406 -11.71096 -11.58248 -10.98173 -10.94038 -10.79800 -10.33306 -10.01468 -9.82068 -9.42775 -8.96966 -8.78922 -8.05523 -7.99467 -6.20325 -4.27249 0.68363 1.75528 2.49316 3.06686 3.22434 3.29729 3.33267 3.50732 3.86220 4.16866 4.32397 4.35549 4.42762 4.56692 4.60917 4.80812 4.97768 5.04214 5.16284 5.23773 5.25420 5.31092 5.37516 5.53612 5.55406 5.60507 5.68322 5.78478 5.96326 6.00564 6.19267 6.38438 7.01182 7.19134 7.28474 7.43097 7.53225 7.65875 7.91436 8.02965 8.50775 8.68785 8.94644 9.39341 10.89883 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034797 B = 0.003156 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.481621 B = 8869.769078 C = 9071.868948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.011 3.989 3 C -0.237 4.237 4 C 0.140 3.860 5 N -0.486 5.486 6 C 0.078 3.922 7 C 0.105 3.895 8 C -0.140 4.140 9 O -0.543 6.543 10 C 0.478 3.522 11 O -0.554 6.554 12 N -0.694 5.694 13 C 0.247 3.753 14 C -0.543 4.543 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.521 3.479 23 O -0.549 6.549 24 C -0.249 4.249 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.161 0.839 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.389 0.611 36 H 0.398 0.602 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.266 0.734 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.403 5.556 5.506 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.007 3.993 3 C -0.261 4.261 4 C 0.013 3.987 5 N -0.196 5.196 6 C -0.045 4.045 7 C 0.060 3.940 8 C -0.198 4.198 9 O -0.350 6.350 10 C 0.260 3.740 11 O -0.434 6.434 12 N -0.342 5.342 13 C 0.127 3.873 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.207 1.207 22 C 0.324 3.676 23 O -0.431 6.431 24 C -0.271 4.271 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.161 0.839 29 H 0.179 0.821 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.239 0.761 36 H 0.232 0.768 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.557 5.624 5.818 23.964 hybrid contribution 0.545 -0.828 -0.852 1.307 sum -22.012 4.795 4.966 23.069 Atomic orbital electron populations 1.20910 0.90566 1.03330 1.03044 1.20172 0.96618 0.92728 0.89740 1.20495 0.92369 0.98824 1.14379 1.21982 0.93528 0.90022 0.93193 1.45423 1.08494 1.06873 1.58827 1.22487 0.77169 1.07024 0.97813 1.21712 0.91316 0.89115 0.91856 1.21814 1.01761 0.94233 1.01981 1.86502 1.76680 1.15538 1.56253 1.20826 0.89145 0.79994 0.83987 1.90683 1.70204 1.47562 1.34923 1.46470 1.10382 1.58938 1.18421 1.19190 0.72549 0.97824 0.97732 1.21253 0.92235 1.42237 1.02437 0.91738 1.24953 0.96570 0.95154 0.97317 1.69980 1.02596 1.45612 1.34132 0.86342 0.78940 0.78834 0.82724 1.19552 1.20772 1.20739 1.17027 0.89144 0.82643 0.78823 1.90923 1.69149 1.30264 1.52785 1.21942 0.92555 0.99411 1.13179 0.90198 0.90957 0.90906 0.83932 0.82144 0.87004 0.87417 0.90341 0.90485 0.91157 0.76117 0.76822 0.95342 0.95349 0.92459 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.03 36.00 0.36 -0.31 16 2 C 0.01 0.09 5.89 -104.55 -0.62 -0.52 16 3 C -0.24 -1.76 9.71 -39.87 -0.39 -2.15 16 4 C 0.14 1.18 8.11 -16.84 -0.14 1.04 16 5 N -0.49 -5.74 2.34 -119.77 -0.28 -6.02 16 6 C 0.08 1.02 4.19 -4.04 -0.02 1.01 16 7 C 0.11 1.54 1.08 -91.78 -0.10 1.44 16 8 C -0.14 -1.69 8.13 37.15 0.30 -1.39 16 9 O -0.54 -8.32 11.08 -44.75 -0.50 -8.82 16 10 C 0.48 9.21 6.69 -10.99 -0.07 9.14 16 11 O -0.55 -12.43 16.10 5.56 0.09 -12.34 16 12 N -0.69 -14.63 5.46 -61.47 -0.34 -14.96 16 13 C 0.25 6.51 5.43 -5.20 -0.03 6.48 16 14 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 15 H 0.06 1.67 7.60 -52.49 -0.40 1.27 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 18 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.52 7.36 6.90 -15.45 -0.11 7.26 16 23 O -0.55 -9.63 15.38 -4.66 -0.07 -9.70 16 24 C -0.25 -2.84 9.65 -39.38 -0.38 -3.22 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 28 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 29 H 0.16 0.87 7.92 -52.49 -0.42 0.45 16 30 H 0.11 1.31 7.74 -51.93 -0.40 0.91 16 31 H 0.11 1.62 7.39 -51.93 -0.38 1.24 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.74 6.28 -51.93 -0.33 0.42 16 35 H 0.39 5.89 8.40 45.56 0.38 6.27 16 36 H 0.40 7.67 7.76 -40.82 -0.32 7.35 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -34.14 339.45 -6.66 -40.80 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.80 Total: 9.88 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.60 Total: 5.36 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.12 Total: -46.24 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.48 Total: -30.86 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.14 -6.66 -40.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344442732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.005 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds