Wall clock time and date at job start Fri Apr 10 2020 17:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40197 * 120.36430 * 2 1 4 4 C 1.35354 * 119.94549 * 180.02562 * 3 2 1 5 5 N 1.35762 * 120.70391 * 0.02562 * 4 3 2 6 6 C 1.46499 * 119.62393 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47280 * 270.02606 * 6 5 4 8 8 C 1.52992 * 109.47069 * 60.00116 * 7 6 5 9 9 O 1.42907 * 109.46838 * 299.99860 * 7 6 5 10 10 C 1.50700 * 109.47045 * 180.02562 * 7 6 5 11 11 O 1.21282 * 119.99974 * 334.99742 * 10 7 6 12 12 N 1.34772 * 120.00030 * 154.99919 * 10 7 6 13 13 C 1.46504 * 120.00305 * 180.02562 * 12 10 7 14 14 C 1.50691 * 109.47432 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00438 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00089 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99791 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00025 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47014 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46776 * 119.99902 * 18 16 14 21 21 H 1.48496 * 109.46849 * 240.00446 * 18 16 14 22 22 C 1.34662 * 120.74915 * 0.02562 * 5 4 3 23 23 O 1.22063 * 119.98236 * 179.97438 * 22 5 4 24 24 C 1.36396 * 120.37105 * 180.30333 * 2 1 3 25 25 H 1.08997 * 109.47315 * 90.00084 * 1 2 3 26 26 H 1.08998 * 109.47188 * 210.00035 * 1 2 3 27 27 H 1.09003 * 109.47460 * 330.00126 * 1 2 3 28 28 H 1.07998 * 120.02681 * 359.97438 * 3 2 1 29 29 H 1.07997 * 119.64643 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46933 * 30.02667 * 6 5 4 31 31 H 1.09000 * 109.46763 * 150.02264 * 6 5 4 32 32 H 1.08997 * 109.47635 * 60.00178 * 8 7 6 33 33 H 1.09000 * 109.46938 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47457 * 299.99856 * 8 7 6 35 35 H 0.96692 * 113.99883 * 299.99862 * 9 7 6 36 36 H 0.97002 * 120.00388 * 359.97438 * 12 10 7 37 37 H 1.08999 * 109.46450 * 300.00335 * 13 12 10 38 38 H 1.09007 * 109.46715 * 59.99627 * 13 12 10 39 39 H 0.97001 * 119.99590 * 179.97438 * 17 16 14 40 40 H 1.08004 * 120.34808 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2156 1.2097 0.0000 4 6 3.5691 1.1998 -0.0005 5 7 4.2538 0.0274 -0.0016 6 6 5.7187 0.0443 -0.0027 7 6 6.2276 0.0515 -1.4456 8 6 5.7027 1.2954 -2.1652 9 8 5.7642 -1.1202 -2.1199 10 6 7.7345 0.0683 -1.4467 11 8 8.3366 0.5179 -0.4947 12 7 8.4130 -0.4164 -2.5055 13 6 9.8780 -0.4006 -2.5063 14 6 10.3860 -0.9946 -3.7947 15 1 9.6876 -1.3481 -4.5388 16 6 11.7425 -1.0858 -4.0242 17 7 12.5930 -0.6549 -3.1183 18 14 12.3723 -1.8214 -5.6216 19 1 11.2210 -2.2271 -6.4674 20 1 13.1856 -0.8112 -6.3449 21 1 13.2106 -3.0100 -5.3226 22 6 3.6016 -1.1507 -0.0026 23 8 4.2313 -2.1965 -0.0040 24 6 2.1966 -1.1768 -0.0062 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6820 2.1486 -0.0004 29 1 4.1102 2.1344 -0.0001 30 1 6.0721 0.9380 0.5117 31 1 6.0926 -0.8418 0.5101 32 1 6.0561 2.1891 -1.6510 33 1 6.0649 1.3003 -3.1933 34 1 4.6127 1.2829 -2.1645 35 1 6.0594 -1.9482 -1.7173 36 1 7.9315 -0.7763 -3.2667 37 1 10.2302 0.6269 -2.4156 38 1 10.2481 -0.9872 -1.6654 39 1 13.5473 -0.7194 -3.2796 40 1 1.6683 -2.1188 -0.0108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344442732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:43 Heat of formation + Delta-G solvation = -122.883415 kcal Electronic energy + Delta-G solvation = -23835.242455 eV Core-core repulsion = 20228.187385 eV Total energy + Delta-G solvation = -3607.055069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.58707 -40.99836 -38.17217 -38.03313 -36.40866 -35.94686 -34.34224 -32.72224 -31.02590 -29.94198 -29.31936 -27.42941 -25.51338 -24.54459 -23.57764 -22.29874 -21.23027 -19.87650 -18.55665 -18.45794 -17.78889 -17.58795 -17.04491 -16.92334 -16.54207 -16.40619 -15.78622 -15.29343 -15.13065 -15.04950 -14.80927 -14.14307 -14.11875 -13.94076 -13.56243 -13.50809 -13.42044 -13.32727 -13.07089 -12.95226 -12.83685 -12.81300 -12.77882 -12.39130 -12.25687 -11.84847 -11.50922 -11.02405 -10.85819 -10.75072 -10.42425 -9.94159 -8.91431 -8.33455 -6.49782 -0.06535 0.97689 1.40546 1.41438 1.45313 1.54042 1.56672 2.24983 2.42688 2.71355 2.98245 3.01577 3.40637 3.51976 3.67627 3.82387 3.84015 4.04778 4.18438 4.38994 4.41862 4.50128 4.61084 4.66669 4.84065 4.87687 4.95262 5.02467 5.03804 5.16238 5.17752 5.29131 5.39980 5.54010 5.56970 5.71516 5.79370 6.14499 6.28129 6.59565 6.75594 7.07281 7.15750 7.30143 8.78678 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034797 B = 0.003156 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.481621 B = 8869.769078 C = 9071.868948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.031 3.969 3 C -0.225 4.225 4 C 0.128 3.872 5 N -0.485 5.485 6 C 0.085 3.915 7 C 0.119 3.881 8 C -0.138 4.138 9 O -0.545 6.545 10 C 0.478 3.522 11 O -0.586 6.586 12 N -0.694 5.694 13 C 0.265 3.735 14 C -0.558 4.558 15 H 0.079 0.921 16 C 0.007 3.993 17 N -0.928 5.928 18 Si 0.983 3.017 19 H -0.257 1.257 20 H -0.275 1.275 21 H -0.278 1.278 22 C 0.504 3.496 23 O -0.605 6.605 24 C -0.287 4.287 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.184 0.816 29 H 0.198 0.802 30 H 0.131 0.869 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.387 0.613 36 H 0.408 0.592 37 H -0.004 1.004 38 H -0.010 1.010 39 H 0.270 0.730 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.059 7.383 4.281 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.027 3.973 3 C -0.247 4.247 4 C 0.003 3.997 5 N -0.194 5.194 6 C -0.038 4.038 7 C 0.073 3.927 8 C -0.195 4.195 9 O -0.352 6.352 10 C 0.263 3.737 11 O -0.468 6.468 12 N -0.343 5.343 13 C 0.143 3.857 14 C -0.596 4.596 15 H 0.097 0.903 16 C -0.193 4.193 17 N -0.566 5.566 18 Si 0.806 3.194 19 H -0.180 1.180 20 H -0.201 1.201 21 H -0.204 1.204 22 C 0.309 3.691 23 O -0.492 6.492 24 C -0.308 4.308 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.115 0.885 28 H 0.202 0.798 29 H 0.215 0.785 30 H 0.149 0.851 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.237 0.763 36 H 0.244 0.756 37 H 0.014 0.986 38 H 0.008 0.992 39 H 0.079 0.921 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -25.287 7.490 4.590 26.770 hybrid contribution 1.257 -1.295 -0.380 1.844 sum -24.030 6.196 4.210 25.171 Atomic orbital electron populations 1.21025 0.88046 1.04664 1.04137 1.20619 0.98425 0.92057 0.86220 1.21047 0.92025 0.99868 1.11759 1.22715 0.94407 0.89846 0.92776 1.45313 1.07618 1.07615 1.58818 1.22280 0.78502 1.06633 0.96422 1.21685 0.87326 0.90154 0.93496 1.21897 1.03052 0.93149 1.01369 1.86501 1.76379 1.15756 1.56557 1.21738 0.91342 0.78143 0.82490 1.90658 1.71618 1.48628 1.35878 1.46224 1.08423 1.59891 1.19751 1.18627 0.75577 0.95059 0.96453 1.21605 0.92952 1.42238 1.02756 0.90344 1.26016 0.96791 0.95308 1.01199 1.70121 1.03132 1.46834 1.36556 0.85134 0.78523 0.77855 0.77878 1.18042 1.20080 1.20392 1.17504 0.90152 0.82628 0.78824 1.90879 1.70158 1.32133 1.56045 1.21897 0.91420 1.00781 1.16747 0.88955 0.90797 0.88494 0.79839 0.78537 0.85149 0.90153 0.88314 0.91129 0.88940 0.76303 0.75605 0.98597 0.99192 0.92124 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.03 71.23 0.71 -0.16 16 2 C 0.03 0.43 5.89 -19.82 -0.12 0.32 16 3 C -0.22 -2.30 9.71 22.08 0.21 -2.09 16 4 C 0.13 1.69 8.11 83.42 0.68 2.37 16 5 N -0.48 -10.88 2.34 -650.97 -1.52 -12.40 16 6 C 0.08 2.23 4.19 86.38 0.36 2.59 16 7 C 0.12 3.42 1.08 -11.54 -0.01 3.41 16 8 C -0.14 -2.98 8.13 71.98 0.58 -2.39 16 9 O -0.55 -16.90 11.08 -139.88 -1.55 -18.45 16 10 C 0.48 18.86 6.69 87.66 0.59 19.45 16 11 O -0.59 -27.19 16.10 -3.04 -0.05 -27.24 16 12 N -0.69 -30.15 5.46 -466.79 -2.55 -32.70 16 13 C 0.27 14.61 5.43 85.63 0.46 15.07 16 14 C -0.56 -30.84 9.28 25.60 0.24 -30.61 16 15 H 0.08 4.03 7.60 -2.91 -0.02 4.00 16 16 C 0.01 0.38 5.46 84.66 0.46 0.84 16 17 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 18 Si 0.98 42.93 29.54 68.60 2.03 44.96 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 22 C 0.50 14.48 6.90 84.82 0.59 15.07 16 23 O -0.60 -22.63 15.38 3.58 0.06 -22.58 16 24 C -0.29 -6.44 9.65 22.40 0.22 -6.22 16 25 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 27 H 0.10 0.29 8.10 -2.39 -0.02 0.27 16 28 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 29 H 0.20 1.11 7.92 -2.91 -0.02 1.08 16 30 H 0.13 2.89 7.74 -2.39 -0.02 2.87 16 31 H 0.08 2.57 7.39 -2.39 -0.02 2.55 16 32 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.62 6.28 -2.39 -0.01 1.60 16 35 H 0.39 12.40 8.40 -74.06 -0.62 11.78 16 36 H 0.41 15.94 7.76 -92.71 -0.72 15.22 16 37 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 39 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -79.07 339.45 1.40 -77.67 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -0.27 Total: 28.67 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 4.98 Total: 17.65 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -3.79 Total: -100.69 kcal Atomic # 8 Polarization: -66.72 SS G_CDS: -1.54 Total: -68.27 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -79.07 1.40 -77.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344442732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.213 kcal (2) G-P(sol) polarization free energy of solvation -79.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds