Wall clock time and date at job start Fri Apr 10 2020 17:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 117.00046 * 2 1 4 4 O 1.20822 * 120.00077 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99675 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46854 * 179.97438 * 5 3 2 7 7 C 1.36948 * 119.99926 * 264.01060 * 6 5 3 8 8 H 1.07999 * 119.99701 * 196.22027 * 7 6 5 9 9 C 1.38814 * 119.99715 * 16.21349 * 7 6 5 10 10 N 1.31624 * 120.00214 * 22.13951 * 9 7 6 11 11 Si 1.86801 * 119.99704 * 202.13880 * 9 7 6 12 12 H 1.48505 * 109.47162 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47136 * 120.00320 * 11 9 7 14 14 H 1.48502 * 109.46960 * 239.99899 * 11 9 7 15 15 C 1.46494 * 120.00390 * 84.01133 * 6 5 3 16 16 C 1.50698 * 109.47585 * 89.99640 * 15 6 5 17 17 O 1.21344 * 119.99779 * 0.02562 * 16 15 6 18 18 C 1.46453 * 120.00297 * 179.97438 * 16 15 6 19 19 C 1.46904 * 127.05898 * 0.03202 * 18 16 15 20 20 C 1.34355 * 106.34783 * 179.97438 * 19 18 16 21 21 C 1.50705 * 125.41284 * 179.97438 * 20 19 18 22 22 N 1.36481 * 109.17068 * 359.73818 * 20 19 18 23 23 H 0.97005 * 124.78263 * 180.26789 * 22 20 19 24 24 C 1.34492 * 110.44707 * 0.44304 * 22 20 19 25 25 C 1.50695 * 125.92439 * 179.82275 * 24 22 20 26 26 H 1.08999 * 109.47340 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47321 * 300.00238 * 1 2 3 28 28 H 1.09004 * 109.46979 * 59.99775 * 1 2 3 29 29 H 1.09000 * 109.47116 * 59.99887 * 5 3 2 30 30 H 1.08997 * 109.47276 * 299.99586 * 5 3 2 31 31 H 0.96999 * 119.99761 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.46704 * 329.99588 * 15 6 5 33 33 H 1.09001 * 109.47373 * 210.00308 * 15 6 5 34 34 H 1.07996 * 126.82409 * 0.02562 * 19 18 16 35 35 H 1.08999 * 109.47336 * 89.99787 * 21 20 19 36 36 H 1.09003 * 109.47057 * 210.00202 * 21 20 19 37 37 H 1.09001 * 109.46886 * 329.99370 * 21 20 19 38 38 H 1.08995 * 109.47390 * 269.69321 * 25 24 22 39 39 H 1.09000 * 109.47200 * 149.69380 * 25 24 22 40 40 H 1.09002 * 109.47088 * 29.69372 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.2951 3.3004 -1.1800 8 1 4.8432 4.2310 -1.1715 9 6 3.9082 2.7335 -2.3866 10 7 2.9061 1.8809 -2.4219 11 14 4.8100 3.1807 -3.9602 12 1 5.8900 4.1525 -3.6528 13 1 5.4016 1.9562 -4.5568 14 1 3.8555 3.7884 -4.9220 15 6 4.0620 3.4205 1.2611 16 6 5.4444 3.2740 1.8428 17 8 6.2810 2.6155 1.2605 18 6 5.7787 3.9271 3.1103 19 6 4.8932 4.7550 3.9401 20 6 5.6206 5.1395 5.0022 21 6 5.1269 6.0081 6.1305 22 7 6.8760 4.6141 4.8995 23 1 7.5858 4.7461 5.5474 24 6 6.9918 3.8907 3.7716 25 6 8.2279 3.1616 3.3119 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.9564 0.7805 -0.8891 30 1 3.9557 0.7809 0.8908 31 1 2.6356 1.4851 -3.2651 32 1 3.3285 3.0235 1.9629 33 1 3.8551 4.4748 1.0771 34 1 3.8621 5.0042 3.7371 35 1 4.7036 5.3799 6.9142 36 1 5.9586 6.5842 6.5362 37 1 4.3617 6.6886 5.7571 38 1 8.8299 3.8236 2.6895 39 1 7.9382 2.2838 2.7342 40 1 8.8097 2.8499 4.1794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348152600.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:48 Heat of formation + Delta-G solvation = -51.723883 kcal Electronic energy + Delta-G solvation = -23967.813209 eV Core-core repulsion = 20363.843849 eV Total energy + Delta-G solvation = -3603.969361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.06651 -38.93248 -38.00243 -35.58018 -34.35899 -32.56887 -31.47610 -30.88040 -29.21620 -28.41260 -26.92624 -25.85411 -24.63343 -22.72296 -21.08982 -20.19989 -19.61949 -18.03831 -16.86069 -16.57323 -16.17305 -15.40115 -15.07232 -15.02349 -14.82159 -14.39170 -13.93248 -13.85459 -13.67127 -13.30726 -13.22794 -12.88169 -12.67469 -12.46009 -12.29853 -12.19817 -12.09129 -12.07144 -11.28657 -11.25498 -11.06779 -10.87785 -10.63027 -10.38769 -10.00025 -9.89267 -9.57134 -9.31343 -8.83305 -8.61407 -8.37453 -7.83540 -6.92380 -5.81709 -3.12834 1.89213 2.47151 3.19690 3.44221 3.51653 3.55641 3.82593 3.90236 4.07902 4.54950 4.78746 4.91345 5.04956 5.10584 5.29014 5.40049 5.45994 5.47529 5.66200 5.71769 5.76285 5.84011 5.90120 5.99627 6.04034 6.13659 6.19307 6.30472 6.39927 6.50088 6.61634 6.82588 6.98415 7.12790 7.18858 7.53084 7.75280 7.83401 8.24176 8.62033 9.11005 9.42805 9.79524 10.21869 11.29769 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.004902 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.745578 B = 5710.525790 C = 6854.374783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.382 6.382 3 C 0.464 3.536 4 O -0.507 6.507 5 C 0.193 3.807 6 N -0.552 5.552 7 C -0.243 4.243 8 H 0.077 0.923 9 C 0.000 4.000 10 N -0.905 5.905 11 Si 0.908 3.092 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.293 1.293 15 C 0.114 3.886 16 C 0.391 3.609 17 O -0.453 6.453 18 C -0.248 4.248 19 C -0.149 4.149 20 C -0.006 4.006 21 C -0.081 4.081 22 N -0.551 5.551 23 H 0.408 0.592 24 C 0.090 3.910 25 C -0.092 4.092 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.116 0.884 30 H 0.051 0.949 31 H 0.255 0.745 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.147 0.853 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.748 2.533 16.256 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.300 6.300 3 C 0.305 3.695 4 O -0.392 6.392 5 C 0.063 3.937 6 N -0.269 5.269 7 C -0.372 4.372 8 H 0.095 0.905 9 C -0.197 4.197 10 N -0.550 5.550 11 Si 0.738 3.262 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.220 1.220 15 C -0.014 4.014 16 C 0.266 3.734 17 O -0.328 6.328 18 C -0.257 4.257 19 C -0.173 4.173 20 C -0.114 4.114 21 C -0.139 4.139 22 N -0.148 5.148 23 H 0.244 0.756 24 C -0.027 4.027 25 C -0.149 4.149 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.953 2.478 15.868 16.807 hybrid contribution 0.217 0.517 -0.583 0.809 sum 5.169 2.996 15.285 16.411 Atomic orbital electron populations 1.22855 0.79911 1.01283 1.01239 1.86554 1.20915 1.36779 1.85732 1.25651 0.93581 0.80156 0.70147 1.90451 1.66719 1.36454 1.45591 1.20242 0.85045 0.86625 1.01799 1.43556 1.74524 1.06933 1.01918 1.19234 1.28291 1.06935 0.82714 0.90486 1.24775 0.96904 1.00141 0.97877 1.69884 1.25185 1.34340 1.25630 0.86121 0.79304 0.77676 0.83056 1.20290 1.21479 1.22027 1.21018 0.92717 0.98513 0.89192 1.23132 0.91831 0.76412 0.82023 1.90429 1.50485 1.33047 1.58841 1.21549 0.93777 1.09584 1.00767 1.21915 0.99365 1.01614 0.94402 1.20133 0.85483 1.05149 1.00675 1.20290 1.01137 0.97648 0.94810 1.41469 1.12201 1.41289 1.19805 0.75572 1.20901 0.97288 0.96943 0.87604 1.20533 0.92306 1.01082 1.00994 0.90174 0.93649 0.92843 0.86676 0.93154 0.93423 0.91236 0.89837 0.83575 0.91313 0.92173 0.90075 0.90593 0.88071 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.58 10.57 -39.27 -0.41 -9.00 16 3 C 0.46 11.71 6.17 36.01 0.22 11.93 16 4 O -0.51 -14.10 15.88 -18.75 -0.30 -14.40 16 5 C 0.19 4.78 5.49 -5.19 -0.03 4.76 16 6 N -0.55 -14.14 1.52 -175.99 -0.27 -14.41 16 7 C -0.24 -6.80 9.66 -15.05 -0.15 -6.95 16 8 H 0.08 2.14 7.92 -52.49 -0.42 1.73 16 9 C 0.00 0.01 4.86 -17.43 -0.08 -0.08 16 10 N -0.90 -26.42 9.31 55.49 0.52 -25.91 16 11 Si 0.91 22.48 29.61 -169.99 -5.03 17.44 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 C 0.11 2.44 5.68 -5.20 -0.03 2.41 16 16 C 0.39 7.84 7.19 -31.00 -0.22 7.62 16 17 O -0.45 -10.22 14.96 5.50 0.08 -10.14 16 18 C -0.25 -4.13 6.29 -103.09 -0.65 -4.78 16 19 C -0.15 -2.10 10.58 -37.45 -0.40 -2.50 16 20 C -0.01 -0.07 7.11 -81.89 -0.58 -0.65 16 21 C -0.08 -0.62 10.40 36.01 0.37 -0.25 16 22 N -0.55 -6.01 5.89 -5.15 -0.03 -6.04 16 23 H 0.41 2.99 8.96 -40.82 -0.37 2.62 16 24 C 0.09 1.25 7.23 -81.44 -0.59 0.66 16 25 C -0.09 -1.12 9.90 36.00 0.36 -0.77 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.78 8.13 -51.93 -0.42 0.35 16 28 H 0.05 1.04 8.13 -51.93 -0.42 0.61 16 29 H 0.12 3.10 6.35 -51.93 -0.33 2.77 16 30 H 0.05 1.12 8.12 -51.93 -0.42 0.70 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.07 1.41 8.07 -51.93 -0.42 0.99 16 33 H 0.08 1.76 8.04 -51.93 -0.42 1.35 16 34 H 0.15 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.10 1.48 6.52 -51.93 -0.34 1.14 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 345.65 15.07 5.21 5.21 Total: -1.00 -35.31 345.65 -6.59 -41.90 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.65 Total: 2.09 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: -0.71 Total: 13.24 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.22 Total: -46.35 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.63 Total: -33.54 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.31 -6.59 -41.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348152600.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.826 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds