Wall clock time and date at job start Fri Apr 10 2020 17:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 117.00046 * 2 1 4 4 O 1.20822 * 120.00077 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99675 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46854 * 179.97438 * 5 3 2 7 7 C 1.36948 * 119.99926 * 264.01060 * 6 5 3 8 8 H 1.07999 * 119.99701 * 196.22027 * 7 6 5 9 9 C 1.38814 * 119.99715 * 16.21349 * 7 6 5 10 10 N 1.31624 * 120.00214 * 22.13951 * 9 7 6 11 11 Si 1.86801 * 119.99704 * 202.13880 * 9 7 6 12 12 H 1.48505 * 109.47162 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47136 * 120.00320 * 11 9 7 14 14 H 1.48502 * 109.46960 * 239.99899 * 11 9 7 15 15 C 1.46494 * 120.00390 * 84.01133 * 6 5 3 16 16 C 1.50698 * 109.47585 * 89.99640 * 15 6 5 17 17 O 1.21344 * 119.99779 * 0.02562 * 16 15 6 18 18 C 1.46453 * 120.00297 * 179.97438 * 16 15 6 19 19 C 1.46904 * 127.05898 * 0.03202 * 18 16 15 20 20 C 1.34355 * 106.34783 * 179.97438 * 19 18 16 21 21 C 1.50705 * 125.41284 * 179.97438 * 20 19 18 22 22 N 1.36481 * 109.17068 * 359.73818 * 20 19 18 23 23 H 0.97005 * 124.78263 * 180.26789 * 22 20 19 24 24 C 1.34492 * 110.44707 * 0.44304 * 22 20 19 25 25 C 1.50695 * 125.92439 * 179.82275 * 24 22 20 26 26 H 1.08999 * 109.47340 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47321 * 300.00238 * 1 2 3 28 28 H 1.09004 * 109.46979 * 59.99775 * 1 2 3 29 29 H 1.09000 * 109.47116 * 59.99887 * 5 3 2 30 30 H 1.08997 * 109.47276 * 299.99586 * 5 3 2 31 31 H 0.96999 * 119.99761 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.46704 * 329.99588 * 15 6 5 33 33 H 1.09001 * 109.47373 * 210.00308 * 15 6 5 34 34 H 1.07996 * 126.82409 * 0.02562 * 19 18 16 35 35 H 1.08999 * 109.47336 * 89.99787 * 21 20 19 36 36 H 1.09003 * 109.47057 * 210.00202 * 21 20 19 37 37 H 1.09001 * 109.46886 * 329.99370 * 21 20 19 38 38 H 1.08995 * 109.47390 * 269.69321 * 25 24 22 39 39 H 1.09000 * 109.47200 * 149.69380 * 25 24 22 40 40 H 1.09002 * 109.47088 * 29.69372 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.2951 3.3004 -1.1800 8 1 4.8432 4.2310 -1.1715 9 6 3.9082 2.7335 -2.3866 10 7 2.9061 1.8809 -2.4219 11 14 4.8100 3.1807 -3.9602 12 1 5.8900 4.1525 -3.6528 13 1 5.4016 1.9562 -4.5568 14 1 3.8555 3.7884 -4.9220 15 6 4.0620 3.4205 1.2611 16 6 5.4444 3.2740 1.8428 17 8 6.2810 2.6155 1.2605 18 6 5.7787 3.9271 3.1103 19 6 4.8932 4.7550 3.9401 20 6 5.6206 5.1395 5.0022 21 6 5.1269 6.0081 6.1305 22 7 6.8760 4.6141 4.8995 23 1 7.5858 4.7461 5.5474 24 6 6.9918 3.8907 3.7716 25 6 8.2279 3.1616 3.3119 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.9564 0.7805 -0.8891 30 1 3.9557 0.7809 0.8908 31 1 2.6356 1.4851 -3.2651 32 1 3.3285 3.0235 1.9629 33 1 3.8551 4.4748 1.0771 34 1 3.8621 5.0042 3.7371 35 1 4.7036 5.3799 6.9142 36 1 5.9586 6.5842 6.5362 37 1 4.3617 6.6886 5.7571 38 1 8.8299 3.8236 2.6895 39 1 7.9382 2.2838 2.7342 40 1 8.8097 2.8499 4.1794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348152600.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:47 Heat of formation + Delta-G solvation = -73.611085 kcal Electronic energy + Delta-G solvation = -23968.762309 eV Core-core repulsion = 20363.843849 eV Total energy + Delta-G solvation = -3604.918461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.11461 -40.84502 -39.60763 -37.45868 -36.34028 -33.54762 -33.33257 -32.21082 -30.32857 -29.92926 -28.61954 -27.65368 -25.82762 -24.36994 -22.57546 -21.59903 -21.13845 -19.46409 -18.84563 -18.12733 -17.64355 -17.26560 -16.89637 -16.60631 -16.15466 -15.93708 -15.64065 -15.48263 -14.89692 -14.58273 -14.47058 -14.12725 -13.99147 -13.90781 -13.81175 -13.42055 -13.30042 -12.98835 -12.87956 -12.82921 -12.72906 -12.50160 -12.33886 -12.27367 -12.04616 -11.92324 -11.39718 -11.26367 -10.68771 -10.32379 -9.70788 -8.93001 -8.87297 -7.95528 -5.27899 0.59329 1.45589 1.46110 1.48267 1.59241 1.94351 2.23734 2.31972 2.44160 2.54446 3.20564 3.46823 3.71514 3.93820 4.12302 4.28883 4.38729 4.45616 4.51642 4.53857 4.56878 4.64174 4.65911 4.73161 4.77860 4.84567 4.87124 4.98729 5.01963 5.08928 5.14616 5.20174 5.45507 5.59115 5.89368 5.90322 6.07838 6.19177 6.69152 6.97893 7.09801 7.45301 7.75426 8.13818 9.14021 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.004902 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.745578 B = 5710.525790 C = 6854.374783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.386 6.386 3 C 0.470 3.530 4 O -0.539 6.539 5 C 0.194 3.806 6 N -0.567 5.567 7 C -0.252 4.252 8 H 0.070 0.930 9 C -0.048 4.048 10 N -0.928 5.928 11 Si 0.970 3.030 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.295 1.295 15 C 0.113 3.887 16 C 0.397 3.603 17 O -0.490 6.490 18 C -0.291 4.291 19 C -0.177 4.177 20 C 0.013 3.987 21 C -0.080 4.080 22 N -0.532 5.532 23 H 0.430 0.570 24 C 0.098 3.902 25 C -0.090 4.090 26 H 0.127 0.873 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.250 0.750 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.149 0.851 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.612 3.160 18.640 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.303 6.303 3 C 0.312 3.688 4 O -0.427 6.427 5 C 0.064 3.936 6 N -0.286 5.286 7 C -0.381 4.381 8 H 0.088 0.912 9 C -0.242 4.242 10 N -0.575 5.575 11 Si 0.798 3.202 12 H -0.197 1.197 13 H -0.213 1.213 14 H -0.222 1.222 15 C -0.014 4.014 16 C 0.275 3.725 17 O -0.368 6.368 18 C -0.300 4.300 19 C -0.200 4.200 20 C -0.096 4.096 21 C -0.137 4.137 22 N -0.130 5.130 23 H 0.270 0.730 24 C -0.021 4.021 25 C -0.147 4.147 26 H 0.145 0.855 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.166 0.834 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.827 3.116 18.313 19.469 hybrid contribution -0.090 0.328 -1.173 1.222 sum 5.737 3.443 17.140 18.400 Atomic orbital electron populations 1.23203 0.77194 1.04308 1.00939 1.86499 1.23510 1.35130 1.85126 1.25548 0.93694 0.80353 0.69246 1.90423 1.67438 1.37611 1.47232 1.20153 0.85256 0.86558 1.01588 1.43665 1.75025 1.07341 1.02557 1.19407 1.27853 1.06823 0.84031 0.91210 1.25466 0.97602 1.00691 1.00456 1.70018 1.26262 1.35483 1.25726 0.85176 0.78092 0.77363 0.79540 1.19750 1.21277 1.22212 1.21143 0.94404 0.97886 0.87928 1.22914 0.90426 0.76002 0.83128 1.90409 1.50952 1.35115 1.60342 1.21287 0.96246 1.12050 1.00407 1.22054 0.99897 1.02620 0.95409 1.20667 0.84880 1.03597 1.00415 1.20434 1.02180 0.97488 0.93612 1.41460 1.12770 1.39732 1.19054 0.72996 1.21022 0.96783 0.96400 0.87910 1.20529 0.92036 0.99900 1.02273 0.85494 0.92619 0.94515 0.89026 0.90972 0.94020 0.90381 0.90180 0.83370 0.89817 0.89842 0.89455 0.90184 0.90793 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 10.56 113.37 1.20 2.52 16 2 O -0.39 -17.27 10.57 -51.45 -0.54 -17.81 16 3 C 0.47 24.13 6.17 71.24 0.44 24.57 16 4 O -0.54 -30.63 15.88 21.98 0.35 -30.29 16 5 C 0.19 9.94 5.49 85.63 0.47 10.40 16 6 N -0.57 -30.07 1.52 -710.70 -1.08 -31.15 16 7 C -0.25 -14.53 9.66 84.03 0.81 -13.72 16 8 H 0.07 4.02 7.92 -2.91 -0.02 4.00 16 9 C -0.05 -2.75 4.86 84.86 0.41 -2.33 16 10 N -0.93 -55.62 9.31 21.65 0.20 -55.42 16 11 Si 0.97 47.32 29.61 68.60 2.03 49.35 16 12 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 14 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 15 C 0.11 5.04 5.68 85.63 0.49 5.52 16 16 C 0.40 16.42 7.19 27.83 0.20 16.62 16 17 O -0.49 -22.96 14.96 -3.23 -0.05 -23.01 16 18 C -0.29 -9.67 6.29 -18.87 -0.12 -9.79 16 19 C -0.18 -4.82 10.58 23.65 0.25 -4.57 16 20 C 0.01 0.27 7.11 40.95 0.29 0.56 16 21 C -0.08 -0.90 10.40 71.24 0.74 -0.16 16 22 N -0.53 -9.90 5.89 -170.20 -1.00 -10.90 16 23 H 0.43 4.43 8.96 -92.70 -0.83 3.60 16 24 C 0.10 2.59 7.23 42.15 0.30 2.89 16 25 C -0.09 -2.07 9.90 71.23 0.71 -1.37 16 26 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 27 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 28 H 0.04 1.41 8.13 -2.38 -0.02 1.39 16 29 H 0.09 5.13 6.35 -2.39 -0.02 5.11 16 30 H 0.07 3.29 8.12 -2.39 -0.02 3.27 16 31 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.08 3.27 8.07 -2.39 -0.02 3.25 16 33 H 0.08 3.54 8.04 -2.39 -0.02 3.53 16 34 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 39 H 0.07 2.17 6.52 -2.39 -0.02 2.15 16 40 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -78.84 345.65 6.33 -72.52 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.23 Total: 15.55 kcal Atomic # 6 Polarization: 24.96 SS G_CDS: 6.19 Total: 31.15 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -1.88 Total: -97.46 kcal Atomic # 8 Polarization: -70.86 SS G_CDS: -0.24 Total: -71.10 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -78.84 6.33 -72.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348152600.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.095 kcal (2) G-P(sol) polarization free energy of solvation -78.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds