Wall clock time and date at job start Fri Apr 10 2020 17:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34957 * 125.52559 * 2 1 4 4 C 1.41211 * 108.24313 * 180.23590 * 3 2 1 5 5 N 1.32930 * 126.37435 * 179.79083 * 4 3 2 6 6 C 1.33833 * 120.00352 * 359.95465 * 5 4 3 7 7 O 1.21835 * 119.99894 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00146 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00034 * 180.02562 * 8 6 5 10 10 H 1.08997 * 110.43794 * 323.90793 * 9 8 6 11 11 C 1.54821 * 110.48789 * 201.21889 * 9 8 6 12 12 C 1.54995 * 102.09344 * 220.44051 * 11 9 8 13 13 O 1.44383 * 103.48649 * 37.02571 * 12 11 9 14 14 C 1.43739 * 106.97763 * 319.93681 * 13 12 11 15 15 N 1.37419 * 107.24351 * 359.75928 * 4 3 2 16 16 H 0.96999 * 126.36454 * 180.02562 * 15 4 3 17 17 N 1.36453 * 125.52615 * 179.81329 * 2 1 3 18 18 C 1.46506 * 125.85280 * 0.02562 * 17 2 1 19 19 C 1.50697 * 109.46529 * 84.71839 * 18 17 2 20 20 H 1.08002 * 120.00599 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99675 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00210 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00019 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 269.99914 * 23 21 19 25 25 H 1.48503 * 109.47399 * 29.99403 * 23 21 19 26 26 H 1.48498 * 109.47295 * 150.00010 * 23 21 19 27 27 H 1.09000 * 109.47090 * 270.17825 * 1 2 3 28 28 H 1.08997 * 109.47358 * 30.18917 * 1 2 3 29 29 H 1.09005 * 109.46706 * 150.18715 * 1 2 3 30 30 H 1.07997 * 125.87823 * 359.97055 * 3 2 1 31 31 H 0.97002 * 119.99986 * 0.02562 * 8 6 5 32 32 H 1.09000 * 110.90610 * 338.64520 * 11 9 8 33 33 H 1.09000 * 110.90123 * 102.24136 * 11 9 8 34 34 H 1.08992 * 110.61933 * 278.52323 * 12 11 9 35 35 H 1.08996 * 110.75183 * 155.58701 * 12 11 9 36 36 H 1.09007 * 109.88125 * 267.09204 * 14 13 12 37 37 H 1.08995 * 109.87833 * 145.94164 * 14 13 12 38 38 H 1.08995 * 109.46912 * 324.71942 * 18 17 2 39 39 H 1.09007 * 109.46641 * 204.71574 * 18 17 2 40 40 H 0.96998 * 119.99640 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2912 1.0984 0.0000 4 6 3.6396 0.6788 -0.0055 5 7 4.7103 1.4666 -0.0111 6 6 4.5625 2.7968 -0.0128 7 8 3.4465 3.2857 -0.0088 8 7 5.6481 3.5954 -0.0191 9 6 5.4863 5.0514 -0.0204 10 1 4.6211 5.3377 -0.6184 11 6 6.7676 5.7386 -0.5522 12 6 6.9016 6.9558 0.3979 13 8 6.4712 6.4357 1.6742 14 6 5.3448 5.5797 1.4203 15 7 3.6386 -0.6953 -0.0033 16 1 4.4193 -1.2710 -0.0056 17 7 2.2999 -1.1105 0.0036 18 6 1.8321 -2.4989 0.0076 19 6 1.5483 -2.9372 -1.4060 20 1 1.7015 -2.2506 -2.2254 21 6 1.0941 -4.2154 -1.6533 22 7 0.8459 -4.5979 -2.8869 23 14 0.8298 -5.4033 -0.2361 24 1 2.0812 -6.1631 0.0127 25 1 0.4614 -4.6428 0.9851 26 1 -0.2631 -6.3482 -0.5794 27 1 -0.3633 0.0032 1.0277 28 1 -0.3634 0.8882 -0.5167 29 1 -0.3633 -0.8917 -0.5110 30 1 1.9468 2.1219 -0.0004 31 1 6.5366 3.2062 -0.0227 32 1 7.6296 5.0776 -0.4617 33 1 6.6349 6.0633 -1.5842 34 1 6.2505 7.7681 0.0751 35 1 7.9368 7.2928 0.4501 36 1 4.4189 6.1467 1.5178 37 1 5.3470 4.7462 2.1226 38 1 0.9209 -2.5735 0.6010 39 1 2.6007 -3.1400 0.4395 40 1 0.5260 -5.4969 -3.0608 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348181653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:58 Heat of formation + Delta-G solvation = 29.404274 kcal Electronic energy + Delta-G solvation = -23126.924420 eV Core-core repulsion = 19558.765792 eV Total energy + Delta-G solvation = -3568.158629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94598 -39.82279 -38.38197 -34.77609 -33.94978 -33.08400 -32.27519 -31.24013 -30.58367 -28.53748 -27.55299 -26.96278 -23.35745 -22.71362 -22.03562 -20.85578 -19.85157 -19.57269 -17.51129 -17.41962 -16.74791 -16.53302 -15.95262 -15.53270 -15.11104 -14.92519 -14.76167 -14.29012 -13.89371 -13.76574 -13.04275 -12.99791 -12.90140 -12.84301 -12.59802 -12.28459 -12.18396 -11.97535 -11.77180 -11.62546 -11.45688 -11.06555 -11.03075 -10.71024 -10.05143 -9.86955 -9.74745 -9.53623 -9.05842 -8.90837 -8.66062 -8.40448 -6.87270 -6.52697 -4.61007 1.68938 1.97226 2.94791 2.99731 3.06108 3.06987 3.48335 3.85592 3.96268 4.31707 4.37568 4.60442 4.75519 4.81678 4.91566 4.98001 5.04990 5.22935 5.46698 5.51721 5.55049 5.66345 5.68778 5.76698 5.79840 5.89445 6.00639 6.04924 6.15201 6.27787 6.40710 6.67560 6.72836 6.92854 7.01666 7.32414 7.57080 7.73711 8.00398 8.25849 8.39779 8.51574 8.99920 9.56181 10.58781 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.040708 B = 0.002782 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.667998 B =10063.584048 C =10224.411161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.192 3.808 3 C -0.330 4.330 4 C 0.491 3.509 5 N -0.712 5.712 6 C 0.685 3.315 7 O -0.630 6.630 8 N -0.722 5.722 9 C 0.134 3.866 10 H 0.099 0.901 11 C -0.162 4.162 12 C 0.048 3.952 13 O -0.381 6.381 14 C 0.035 3.965 15 N -0.471 5.471 16 H 0.445 0.555 17 N -0.344 5.344 18 C 0.229 3.771 19 C -0.562 4.562 20 H 0.085 0.915 21 C 0.084 3.916 22 N -0.876 5.876 23 Si 0.873 3.127 24 H -0.271 1.271 25 H -0.263 1.263 26 H -0.277 1.277 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.184 0.816 31 H 0.398 0.602 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.767 12.998 6.547 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.067 3.933 3 C -0.363 4.363 4 C 0.238 3.762 5 N -0.476 5.476 6 C 0.384 3.616 7 O -0.513 6.513 8 N -0.376 5.376 9 C 0.027 3.973 10 H 0.117 0.883 11 C -0.200 4.200 12 C -0.029 4.029 13 O -0.300 6.300 14 C -0.043 4.043 15 N -0.193 5.193 16 H 0.292 0.708 17 N -0.131 5.131 18 C 0.111 3.889 19 C -0.600 4.600 20 H 0.103 0.897 21 C -0.122 4.122 22 N -0.511 5.511 23 Si 0.698 3.302 24 H -0.196 1.196 25 H -0.188 1.188 26 H -0.202 1.202 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.201 0.799 31 H 0.233 0.767 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.800 12.605 6.624 15.375 hybrid contribution 0.073 -1.141 0.224 1.165 sum 5.873 11.464 6.848 14.588 Atomic orbital electron populations 1.20672 0.86429 1.05316 1.03484 1.21277 0.94427 0.85339 0.92208 1.22214 0.91083 1.00283 1.22706 1.18661 0.91080 0.81956 0.84470 1.68032 1.28701 1.03864 1.47040 1.16631 0.82998 0.84961 0.76968 1.90731 1.24301 1.78626 1.57607 1.44746 1.08622 1.03964 1.80310 1.22037 0.98600 0.80818 0.95861 0.88348 1.23414 0.98134 0.97953 1.00518 1.23501 1.00647 0.95420 0.83369 1.88879 1.48608 1.64270 1.28215 1.23744 0.89095 0.94078 0.97375 1.44326 0.98589 1.04980 1.71448 0.70825 1.47327 0.92833 1.07357 1.65607 1.20296 0.95826 0.72631 1.00161 1.21240 1.48094 0.99892 0.90807 0.89676 1.24822 0.94034 0.97535 0.95852 1.69858 1.42691 1.19521 1.19068 0.86919 0.79100 0.81749 0.82401 1.19592 1.18761 1.20199 0.89916 0.89159 0.88941 0.79884 0.76739 0.89795 0.89465 0.91992 0.88871 0.91738 0.89370 0.91920 0.93877 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.93 36.01 0.36 -1.04 16 2 C 0.19 3.39 6.92 -81.70 -0.57 2.83 16 3 C -0.33 -6.33 9.41 -39.62 -0.37 -6.71 16 4 C 0.49 9.66 8.07 -155.29 -1.25 8.41 16 5 N -0.71 -14.07 10.59 -15.79 -0.17 -14.23 16 6 C 0.69 13.25 8.47 -87.76 -0.74 12.51 16 7 O -0.63 -13.43 12.97 5.07 0.07 -13.36 16 8 N -0.72 -10.90 5.05 -57.38 -0.29 -11.19 16 9 C 0.13 1.70 3.35 -66.40 -0.22 1.48 16 10 H 0.10 1.36 7.66 -51.93 -0.40 0.96 16 11 C -0.16 -1.48 6.87 -24.72 -0.17 -1.65 16 12 C 0.05 0.42 7.72 38.21 0.29 0.72 16 13 O -0.38 -4.76 11.52 -35.23 -0.41 -5.16 16 14 C 0.04 0.45 7.50 37.73 0.28 0.74 16 15 N -0.47 -8.46 7.38 31.33 0.23 -8.23 16 16 H 0.44 6.93 8.96 -182.55 -1.64 5.29 16 17 N -0.34 -6.42 3.63 -58.04 -0.21 -6.63 16 18 C 0.23 4.46 4.77 -5.19 -0.02 4.43 16 19 C -0.56 -13.57 9.94 -34.44 -0.34 -13.91 16 20 H 0.09 2.37 8.06 -52.49 -0.42 1.94 16 21 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 22 N -0.88 -23.78 13.96 55.43 0.77 -23.01 16 23 Si 0.87 17.82 27.47 -169.99 -4.67 13.15 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.26 -4.94 6.54 56.52 0.37 -4.57 16 26 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.38 7.80 -51.93 -0.41 0.98 16 30 H 0.18 3.67 5.77 -52.49 -0.30 3.37 16 31 H 0.40 5.36 8.45 -40.82 -0.34 5.02 16 32 H 0.08 0.73 7.75 -51.93 -0.40 0.33 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 37 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 38 H 0.06 1.14 6.95 -51.93 -0.36 0.78 16 39 H 0.04 0.80 7.57 -51.93 -0.39 0.40 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -31.01 335.81 -9.25 -40.26 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -6.78 Total: 13.56 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -2.86 Total: 9.79 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: 0.34 Total: -63.29 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.34 Total: -18.52 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -4.67 Total: 13.15 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.01 -9.25 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348181653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.663 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds