Wall clock time and date at job start Fri Apr 10 2020 17:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34957 * 125.52559 * 2 1 4 4 C 1.41211 * 108.24313 * 180.23590 * 3 2 1 5 5 N 1.32930 * 126.37435 * 179.79083 * 4 3 2 6 6 C 1.33833 * 120.00352 * 359.95465 * 5 4 3 7 7 O 1.21835 * 119.99894 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00146 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00034 * 180.02562 * 8 6 5 10 10 H 1.08997 * 110.43794 * 323.90793 * 9 8 6 11 11 C 1.54821 * 110.48789 * 201.21889 * 9 8 6 12 12 C 1.54995 * 102.09344 * 220.44051 * 11 9 8 13 13 O 1.44383 * 103.48649 * 37.02571 * 12 11 9 14 14 C 1.43739 * 106.97763 * 319.93681 * 13 12 11 15 15 N 1.37419 * 107.24351 * 359.75928 * 4 3 2 16 16 H 0.96999 * 126.36454 * 180.02562 * 15 4 3 17 17 N 1.36453 * 125.52615 * 179.81329 * 2 1 3 18 18 C 1.46506 * 125.85280 * 0.02562 * 17 2 1 19 19 C 1.50697 * 109.46529 * 84.71839 * 18 17 2 20 20 H 1.08002 * 120.00599 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99675 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00210 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00019 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 269.99914 * 23 21 19 25 25 H 1.48503 * 109.47399 * 29.99403 * 23 21 19 26 26 H 1.48498 * 109.47295 * 150.00010 * 23 21 19 27 27 H 1.09000 * 109.47090 * 270.17825 * 1 2 3 28 28 H 1.08997 * 109.47358 * 30.18917 * 1 2 3 29 29 H 1.09005 * 109.46706 * 150.18715 * 1 2 3 30 30 H 1.07997 * 125.87823 * 359.97055 * 3 2 1 31 31 H 0.97002 * 119.99986 * 0.02562 * 8 6 5 32 32 H 1.09000 * 110.90610 * 338.64520 * 11 9 8 33 33 H 1.09000 * 110.90123 * 102.24136 * 11 9 8 34 34 H 1.08992 * 110.61933 * 278.52323 * 12 11 9 35 35 H 1.08996 * 110.75183 * 155.58701 * 12 11 9 36 36 H 1.09007 * 109.88125 * 267.09204 * 14 13 12 37 37 H 1.08995 * 109.87833 * 145.94164 * 14 13 12 38 38 H 1.08995 * 109.46912 * 324.71942 * 18 17 2 39 39 H 1.09007 * 109.46641 * 204.71574 * 18 17 2 40 40 H 0.96998 * 119.99640 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2912 1.0984 0.0000 4 6 3.6396 0.6788 -0.0055 5 7 4.7103 1.4666 -0.0111 6 6 4.5625 2.7968 -0.0128 7 8 3.4465 3.2857 -0.0088 8 7 5.6481 3.5954 -0.0191 9 6 5.4863 5.0514 -0.0204 10 1 4.6211 5.3377 -0.6184 11 6 6.7676 5.7386 -0.5522 12 6 6.9016 6.9558 0.3979 13 8 6.4712 6.4357 1.6742 14 6 5.3448 5.5797 1.4203 15 7 3.6386 -0.6953 -0.0033 16 1 4.4193 -1.2710 -0.0056 17 7 2.2999 -1.1105 0.0036 18 6 1.8321 -2.4989 0.0076 19 6 1.5483 -2.9372 -1.4060 20 1 1.7015 -2.2506 -2.2254 21 6 1.0941 -4.2154 -1.6533 22 7 0.8459 -4.5979 -2.8869 23 14 0.8298 -5.4033 -0.2361 24 1 2.0812 -6.1631 0.0127 25 1 0.4614 -4.6428 0.9851 26 1 -0.2631 -6.3482 -0.5794 27 1 -0.3633 0.0032 1.0277 28 1 -0.3634 0.8882 -0.5167 29 1 -0.3633 -0.8917 -0.5110 30 1 1.9468 2.1219 -0.0004 31 1 6.5366 3.2062 -0.0227 32 1 7.6296 5.0776 -0.4617 33 1 6.6349 6.0633 -1.5842 34 1 6.2505 7.7681 0.0751 35 1 7.9368 7.2928 0.4501 36 1 4.4189 6.1467 1.5178 37 1 5.3470 4.7462 2.1226 38 1 0.9209 -2.5735 0.6010 39 1 2.6007 -3.1400 0.4395 40 1 0.5260 -5.4969 -3.0608 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348181653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:57 Heat of formation + Delta-G solvation = 5.828757 kcal Electronic energy + Delta-G solvation = -23127.946731 eV Core-core repulsion = 19558.765792 eV Total energy + Delta-G solvation = -3569.180940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.40203 -40.93424 -39.64406 -36.20258 -35.35963 -34.73251 -33.70123 -32.73787 -31.64966 -29.61801 -28.83314 -28.54351 -24.78359 -23.94783 -23.24787 -21.99661 -21.24856 -20.96024 -19.27710 -18.90331 -17.85714 -17.79236 -17.10501 -16.72629 -16.59493 -16.32414 -16.01433 -15.74895 -15.32840 -14.90660 -14.65643 -14.33561 -14.27851 -13.89950 -13.77602 -13.73488 -13.35772 -13.17034 -12.95356 -12.80582 -12.59862 -12.45331 -12.25495 -11.87883 -11.83316 -11.24082 -11.13574 -10.92055 -10.78975 -10.32457 -9.96406 -9.90561 -8.43062 -8.36018 -6.55872 0.22421 0.54496 1.38469 1.39441 1.48537 1.59794 2.24019 2.25554 2.87367 2.94854 2.99731 3.12375 3.56055 3.67565 3.90116 4.11096 4.14065 4.17548 4.27516 4.33369 4.45761 4.50764 4.72888 4.74793 4.78009 4.84203 4.86006 4.94469 4.97407 5.03021 5.07790 5.15737 5.31079 5.72153 5.85316 5.92162 6.01895 6.11027 6.42163 6.53952 6.87384 6.96880 7.10295 8.09414 8.73961 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.040708 B = 0.002782 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.667998 B =10063.584048 C =10224.411161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.199 3.801 3 C -0.347 4.347 4 C 0.475 3.525 5 N -0.721 5.721 6 C 0.672 3.328 7 O -0.657 6.657 8 N -0.710 5.710 9 C 0.128 3.872 10 H 0.085 0.915 11 C -0.151 4.151 12 C 0.044 3.956 13 O -0.398 6.398 14 C 0.042 3.958 15 N -0.467 5.467 16 H 0.453 0.547 17 N -0.350 5.350 18 C 0.234 3.766 19 C -0.562 4.562 20 H 0.032 0.968 21 C 0.026 3.974 22 N -0.934 5.934 23 Si 0.946 3.054 24 H -0.266 1.266 25 H -0.226 1.226 26 H -0.283 1.283 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.174 0.826 31 H 0.406 0.594 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.091 13.188 8.374 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.074 3.926 3 C -0.380 4.380 4 C 0.222 3.778 5 N -0.486 5.486 6 C 0.371 3.629 7 O -0.541 6.541 8 N -0.364 5.364 9 C 0.021 3.979 10 H 0.103 0.897 11 C -0.189 4.189 12 C -0.032 4.032 13 O -0.317 6.317 14 C -0.037 4.037 15 N -0.191 5.191 16 H 0.302 0.698 17 N -0.137 5.137 18 C 0.116 3.884 19 C -0.600 4.600 20 H 0.050 0.950 21 C -0.175 4.175 22 N -0.572 5.572 23 Si 0.767 3.233 24 H -0.191 1.191 25 H -0.148 1.148 26 H -0.209 1.209 27 H 0.134 0.866 28 H 0.124 0.876 29 H 0.100 0.900 30 H 0.191 0.809 31 H 0.242 0.758 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.135 0.865 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.173 12.837 8.465 16.570 hybrid contribution 0.014 -1.089 -0.436 1.173 sum 6.187 11.748 8.029 15.517 Atomic orbital electron populations 1.20849 0.83650 1.05518 1.05670 1.21833 0.96003 0.84468 0.90276 1.22121 0.91351 1.00320 1.24163 1.18891 0.91519 0.82570 0.84826 1.68093 1.28874 1.04183 1.47444 1.16953 0.83637 0.85173 0.77102 1.90704 1.25494 1.78962 1.58945 1.44725 1.07977 1.04747 1.78991 1.22205 1.00231 0.79490 0.95951 0.89674 1.23410 0.96240 0.97729 1.01512 1.23770 1.02346 0.95396 0.81658 1.88860 1.48279 1.64240 1.30317 1.23559 0.89565 0.93708 0.96856 1.44326 0.98841 1.04630 1.71291 0.69797 1.47355 0.93187 1.07445 1.65747 1.20234 0.97593 0.73176 0.97421 1.21345 1.47543 0.99107 0.91969 0.94990 1.25794 0.93477 0.99579 0.98655 1.70030 1.44806 1.20247 1.22117 0.85763 0.78799 0.78992 0.79736 1.19143 1.14834 1.20902 0.86564 0.87637 0.89953 0.80918 0.75777 0.89000 0.87571 0.90582 0.86465 0.91697 0.91305 0.89139 0.91746 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.54 9.93 71.24 0.71 -1.83 16 2 C 0.20 6.83 6.92 41.09 0.28 7.12 16 3 C -0.35 -13.37 9.41 22.25 0.21 -13.16 16 4 C 0.48 18.80 8.07 133.95 1.08 19.88 16 5 N -0.72 -28.77 10.59 -322.56 -3.42 -32.19 16 6 C 0.67 26.37 8.47 179.35 1.52 27.89 16 7 O -0.66 -28.61 12.97 -4.78 -0.06 -28.68 16 8 N -0.71 -21.36 5.05 -453.61 -2.29 -23.65 16 9 C 0.13 3.18 3.35 45.99 0.15 3.33 16 10 H 0.09 2.36 7.66 -2.39 -0.02 2.34 16 11 C -0.15 -2.45 6.87 31.90 0.22 -2.23 16 12 C 0.04 0.68 7.72 72.66 0.56 1.24 16 13 O -0.40 -9.44 11.52 -148.98 -1.72 -11.16 16 14 C 0.04 1.06 7.50 72.35 0.54 1.61 16 15 N -0.47 -16.59 7.38 -54.79 -0.40 -16.99 16 16 H 0.45 13.87 8.96 -213.28 -1.91 11.96 16 17 N -0.35 -12.66 3.63 -337.53 -1.23 -13.89 16 18 C 0.23 8.58 4.77 85.63 0.41 8.99 16 19 C -0.56 -27.15 9.94 25.60 0.25 -26.89 16 20 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 21 C 0.03 1.27 5.47 84.65 0.46 1.74 16 22 N -0.93 -52.03 13.96 21.45 0.30 -51.73 16 23 Si 0.95 35.19 27.47 68.60 1.88 37.07 16 24 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 25 H -0.23 -7.02 6.54 99.48 0.65 -6.37 16 26 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 27 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.08 2.32 7.80 -2.38 -0.02 2.30 16 30 H 0.17 7.06 5.77 -2.91 -0.02 7.05 16 31 H 0.41 10.72 8.45 -92.71 -0.78 9.94 16 32 H 0.09 1.37 7.75 -2.39 -0.02 1.35 16 33 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.07 2.01 7.93 -2.39 -0.02 1.99 16 38 H 0.09 2.91 6.95 -2.39 -0.02 2.89 16 39 H 0.06 2.15 7.57 -2.38 -0.02 2.13 16 40 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -69.92 335.81 -2.20 -72.12 By element: Atomic # 1 Polarization: 43.07 SS G_CDS: -1.67 Total: 41.41 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 6.40 Total: 27.68 kcal Atomic # 7 Polarization: -131.40 SS G_CDS: -7.04 Total: -138.44 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.78 Total: -39.84 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 1.88 Total: 37.07 kcal Total: -69.92 -2.20 -72.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348181653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.948 kcal (2) G-P(sol) polarization free energy of solvation -69.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds