Wall clock time and date at job start Fri Apr 10 2020 17:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50707 * 119.99908 * 2 1 4 4 O 1.42898 * 109.46918 * 134.99681 * 3 2 1 5 5 C 1.42901 * 113.99598 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47199 * 180.02562 * 5 4 3 7 7 H 1.09007 * 110.53363 * 54.04086 * 6 5 4 8 8 N 1.47309 * 110.73051 * 291.12290 * 6 5 4 9 9 C 1.34525 * 106.61869 * 241.40777 * 8 6 5 10 10 O 1.21543 * 123.77200 * 180.02562 * 9 8 6 11 11 N 1.33790 * 112.46030 * 359.97438 * 9 8 6 12 12 C 1.46496 * 124.18244 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47340 * 264.17660 * 12 11 9 14 14 C 1.50699 * 115.54606 * 269.09302 * 13 12 11 15 15 H 1.07996 * 119.99718 * 116.82081 * 14 13 12 16 16 C 1.37873 * 120.00091 * 296.81188 * 14 13 12 17 17 N 1.31517 * 119.99968 * 164.88208 * 16 14 13 18 18 Si 1.86808 * 120.00308 * 344.88891 * 16 14 13 19 19 H 1.48495 * 109.47125 * 84.54253 * 18 16 14 20 20 H 1.48497 * 109.47043 * 204.54274 * 18 16 14 21 21 H 1.48497 * 109.46660 * 324.54404 * 18 16 14 22 22 C 1.53001 * 117.49727 * 123.38769 * 13 12 11 23 23 C 1.52997 * 117.49788 * 54.76490 * 13 12 11 24 24 C 1.34773 * 111.64280 * 0.02562 * 11 9 8 25 25 O 1.21234 * 127.15823 * 180.02562 * 24 11 9 26 26 H 1.07996 * 119.99951 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99737 * 180.02562 * 1 2 3 28 28 H 1.07996 * 119.99951 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46647 * 15.00249 * 3 2 1 30 30 H 1.08994 * 109.46901 * 255.00217 * 3 2 1 31 31 H 1.09001 * 109.47160 * 60.00769 * 5 4 3 32 32 H 1.09000 * 109.47546 * 300.00261 * 5 4 3 33 33 H 0.96998 * 126.69305 * 61.38388 * 8 6 5 34 34 H 1.08998 * 109.46667 * 24.17476 * 12 11 9 35 35 H 1.09000 * 109.46850 * 144.17455 * 12 11 9 36 36 H 0.97002 * 119.99807 * 180.02562 * 17 16 14 37 37 H 1.08997 * 117.50183 * 359.97438 * 22 13 12 38 38 H 1.08998 * 117.49717 * 145.02026 * 22 13 12 39 39 H 1.09004 * 117.49289 * 214.98235 * 23 13 12 40 40 H 1.08997 * 117.50311 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9083 2.4350 1.0321 6 6 5.0112 2.2539 2.0770 7 1 5.5975 1.3602 1.8631 8 7 4.4390 2.1862 3.4327 9 6 4.9495 3.2251 4.1181 10 8 4.6823 3.4653 5.2792 11 7 5.7852 3.9638 3.3792 12 6 6.4836 5.1546 3.8693 13 6 5.6908 6.4054 3.4849 14 6 6.0577 7.0262 2.1617 15 1 5.3294 7.0704 1.3655 16 6 7.3232 7.5380 1.9676 17 7 7.7451 7.8048 0.7509 18 14 8.4385 7.8523 3.4329 19 1 9.1455 6.5976 3.7949 20 1 9.4333 8.8976 3.0825 21 1 7.6232 8.3114 4.5859 22 6 5.2649 7.3465 4.6135 23 6 4.2235 6.4711 3.9135 24 6 5.9043 3.4776 2.1279 25 8 6.5847 3.9255 1.2300 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3855 2.1161 0.2660 30 1 2.4755 1.4868 -0.9926 31 1 3.2689 3.2697 1.3193 32 1 4.3587 2.6397 0.0608 33 1 3.8153 1.5223 3.7661 34 1 6.5749 5.1015 4.9542 35 1 7.4769 5.2026 3.4231 36 1 8.6356 8.1646 0.6144 37 1 5.5493 7.0744 5.6300 38 1 5.2502 8.4151 4.3991 39 1 3.5237 6.9638 3.2384 40 1 3.8229 5.6232 4.4690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348761955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:21 Heat of formation + Delta-G solvation = -53.998785 kcal Electronic energy + Delta-G solvation = -24357.071750 eV Core-core repulsion = 20753.003742 eV Total energy + Delta-G solvation = -3604.068008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.42810 -39.64465 -39.28328 -38.68275 -37.14496 -35.40999 -34.54113 -34.22824 -30.66412 -29.23448 -27.54263 -26.83251 -25.12126 -23.38328 -23.17850 -22.08837 -20.85744 -20.70838 -19.10547 -18.57366 -18.13316 -17.69689 -17.45385 -17.01999 -16.70209 -16.47177 -16.38042 -15.84750 -15.48826 -15.11387 -14.96171 -14.82464 -14.78322 -14.40175 -13.78665 -13.61848 -13.11767 -13.00095 -12.97394 -12.58737 -12.36440 -12.22336 -11.98841 -11.85565 -11.76536 -11.25842 -10.96729 -10.95959 -10.79008 -10.60588 -10.44322 -10.33452 -10.24053 -8.26801 -6.27028 0.61317 1.15090 1.30077 1.34615 1.42180 1.53801 1.99900 2.11897 2.39249 2.59983 2.95429 3.08058 3.32780 3.62646 3.79246 3.94150 4.12291 4.15456 4.19951 4.27511 4.32466 4.37276 4.46097 4.47471 4.51683 4.63238 4.66414 4.81092 4.89577 5.01418 5.02738 5.23722 5.45013 5.68380 5.69177 5.73130 5.85289 6.03600 6.13124 6.30799 6.49341 6.72812 7.14435 7.37110 8.89164 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020573 B = 0.004562 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.676642 B = 6135.733089 C = 6592.410085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.166 4.166 3 C 0.081 3.919 4 O -0.382 6.382 5 C 0.072 3.928 6 C 0.114 3.886 7 H 0.165 0.835 8 N -0.698 5.698 9 C 0.702 3.298 10 O -0.574 6.574 11 N -0.568 5.568 12 C 0.152 3.848 13 C -0.041 4.041 14 C -0.478 4.478 15 H 0.024 0.976 16 C 0.033 3.967 17 N -0.935 5.935 18 Si 0.914 3.086 19 H -0.264 1.264 20 H -0.294 1.294 21 H -0.225 1.225 22 C -0.171 4.171 23 C -0.164 4.164 24 C 0.515 3.485 25 O -0.474 6.474 26 H 0.101 0.899 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.453 0.547 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.393 -16.437 2.394 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C 0.006 3.994 4 O -0.302 6.302 5 C -0.006 4.006 6 C 0.005 3.995 7 H 0.182 0.818 8 N -0.363 5.363 9 C 0.403 3.597 10 O -0.451 6.451 11 N -0.313 5.313 12 C 0.031 3.969 13 C -0.042 4.042 14 C -0.515 4.515 15 H 0.042 0.958 16 C -0.166 4.166 17 N -0.573 5.573 18 Si 0.738 3.262 19 H -0.189 1.189 20 H -0.220 1.220 21 H -0.147 1.147 22 C -0.209 4.209 23 C -0.202 4.202 24 C 0.301 3.699 25 O -0.343 6.343 26 H 0.120 0.880 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.300 0.700 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.920 -16.075 2.520 19.056 hybrid contribution 0.463 0.620 -0.088 0.779 sum -9.457 -15.455 2.432 18.281 Atomic orbital electron populations 1.24065 0.95342 1.03276 0.98178 1.22744 0.95988 0.97687 1.01990 1.21744 0.88389 0.96870 0.92431 1.87799 1.45190 1.35569 1.61595 1.22389 0.91984 0.88223 0.97971 1.21991 0.94691 0.98687 0.84178 0.81753 1.45339 1.49879 1.29866 1.11240 1.15957 0.78855 0.80405 0.84491 1.90946 1.65093 1.73827 1.15231 1.46356 1.43318 1.27501 1.14117 1.21512 0.94762 0.81575 0.99079 1.19609 0.95210 0.94709 0.94696 1.20116 0.97442 1.38292 0.95663 0.95773 1.25648 0.98831 0.94489 0.97644 1.70105 1.19157 1.45191 1.22876 0.86256 0.79107 0.78681 0.82182 1.18949 1.22016 1.14727 1.23128 1.04097 0.97210 0.96447 1.22697 0.91883 1.02225 1.03355 1.21092 0.82249 0.84837 0.81725 1.90913 1.40115 1.62960 1.40272 0.88038 0.86258 0.86069 0.92335 0.91349 0.92601 0.90207 0.69952 0.88732 0.90954 0.92714 0.88529 0.89690 0.90515 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 14.31 67.78 0.97 -1.07 16 2 C -0.17 -2.38 9.89 25.65 0.25 -2.13 16 3 C 0.08 1.37 6.35 71.24 0.45 1.82 16 4 O -0.38 -7.54 10.33 -148.98 -1.54 -9.08 16 5 C 0.07 1.65 5.67 71.98 0.41 2.06 16 6 C 0.11 2.73 3.96 44.37 0.18 2.90 16 7 H 0.17 2.93 8.14 -2.38 -0.02 2.91 16 8 N -0.70 -16.42 6.25 -459.60 -2.87 -19.29 16 9 C 0.70 22.95 7.84 179.44 1.41 24.36 16 10 O -0.57 -21.49 16.55 -3.85 -0.06 -21.55 16 11 N -0.57 -21.16 2.42 -773.12 -1.87 -23.03 16 12 C 0.15 6.40 4.97 86.38 0.43 6.82 16 13 C -0.04 -1.86 1.08 -52.93 -0.06 -1.91 16 14 C -0.48 -26.99 9.33 25.60 0.24 -26.75 16 15 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 16 C 0.03 1.90 5.31 84.65 0.45 2.35 16 17 N -0.93 -58.58 13.96 21.45 0.30 -58.28 16 18 Si 0.91 42.93 25.56 68.60 1.75 44.68 16 19 H -0.26 -11.84 6.84 99.48 0.68 -11.16 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.22 -9.50 6.02 99.48 0.60 -8.90 16 22 C -0.17 -6.93 7.95 30.60 0.24 -6.69 16 23 C -0.16 -6.73 9.65 30.59 0.30 -6.44 16 24 C 0.51 18.61 7.65 87.94 0.67 19.29 16 25 O -0.47 -21.65 17.84 -2.89 -0.05 -21.70 16 26 H 0.10 1.13 7.90 -2.91 -0.02 1.11 16 27 H 0.12 1.03 8.06 -2.91 -0.02 1.01 16 28 H 0.12 1.60 8.06 -2.91 -0.02 1.58 16 29 H 0.06 0.96 7.86 -2.38 -0.02 0.95 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.45 8.13 8.96 -92.71 -0.83 7.30 16 34 H 0.09 3.61 7.46 -2.39 -0.02 3.59 16 35 H 0.07 3.32 6.08 -2.39 -0.01 3.31 16 36 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.10 3.47 8.03 -2.39 -0.02 3.45 16 38 H 0.08 3.51 8.14 -2.39 -0.02 3.50 16 39 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 40 H 0.09 3.43 6.51 -2.39 -0.02 3.42 16 Total: -1.00 -72.69 340.97 1.69 -71.00 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.09 Total: 22.65 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 5.94 Total: 14.61 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -4.44 Total: -100.61 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -1.65 Total: -52.33 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.75 Total: 44.68 kcal Total: -72.69 1.69 -71.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348761955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.005 kcal (2) G-P(sol) polarization free energy of solvation -72.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds