Wall clock time and date at job start Fri Apr 10 2020 17:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36011 * 117.00244 * 2 1 4 4 C 1.38501 * 120.07650 * 359.72780 * 3 2 1 5 5 C 1.38291 * 120.01539 * 179.74067 * 4 3 2 6 6 C 1.50696 * 119.91157 * 180.27262 * 5 4 3 7 7 C 1.52999 * 109.47656 * 270.23779 * 6 5 4 8 8 O 1.42892 * 109.47211 * 180.02562 * 7 6 5 9 9 C 1.38260 * 120.17811 * 0.51353 * 5 4 3 10 10 C 1.38220 * 120.15840 * 359.76564 * 9 5 4 11 11 C 1.38721 * 119.98241 * 359.97438 * 10 9 5 12 12 N 1.39969 * 120.08923 * 179.97438 * 11 10 9 13 13 C 1.46499 * 120.00003 * 0.02562 * 12 11 10 14 14 C 1.50697 * 109.47018 * 179.97438 * 13 12 11 15 15 O 1.21291 * 120.00447 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99771 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99794 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99882 * 359.97438 * 17 16 14 19 19 C 1.38942 * 120.00067 * 179.97438 * 17 16 14 20 20 N 1.31421 * 120.00055 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00440 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46807 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47050 * 119.99774 * 21 19 17 24 24 H 1.48498 * 109.47452 * 240.00134 * 21 19 17 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99837 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99958 * 1 2 3 28 28 H 1.07993 * 119.99461 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.46624 * 30.23966 * 6 5 4 30 30 H 1.09002 * 109.46916 * 150.23518 * 6 5 4 31 31 H 1.08997 * 109.46695 * 300.00246 * 7 6 5 32 32 H 1.09002 * 109.47171 * 59.99895 * 7 6 5 33 33 H 0.96707 * 113.99888 * 180.02562 * 8 7 6 34 34 H 1.08001 * 119.91667 * 179.74403 * 9 5 4 35 35 H 1.08005 * 120.00987 * 179.97438 * 10 9 5 36 36 H 0.97002 * 120.00139 * 180.02562 * 12 11 10 37 37 H 1.08995 * 109.47061 * 300.00090 * 13 12 11 38 38 H 1.09003 * 109.46607 * 59.99937 * 13 12 11 39 39 H 0.96991 * 120.00351 * 359.97438 * 16 14 13 40 40 H 0.96996 * 120.00012 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.2938 2.3744 -0.0057 5 6 1.9230 3.6059 -0.0003 6 6 1.1017 4.8694 -0.0003 7 6 0.8241 5.2974 -1.4427 8 8 0.0458 6.4958 -1.4426 9 6 3.3036 3.6811 0.0001 10 6 4.0619 2.5255 0.0000 11 6 3.4377 1.2867 0.0000 12 7 4.2034 0.1150 -0.0007 13 6 5.6662 0.1960 -0.0008 14 6 6.2462 -1.1949 -0.0010 15 8 5.5103 -2.1590 -0.0014 16 7 7.5829 -1.3676 -0.0006 17 6 8.1106 -2.6329 -0.0012 18 1 7.4552 -3.4914 -0.0016 19 6 9.4886 -2.8110 -0.0014 20 7 10.2862 -1.7664 -0.0014 21 14 10.2077 -4.5350 -0.0015 22 1 9.1061 -5.5308 -0.0008 23 1 11.0442 -4.7223 -1.2142 24 1 11.0445 -4.7225 1.2108 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 0.2153 2.3193 -0.0106 29 1 0.1573 4.6888 0.5133 30 1 1.6497 5.6590 0.5140 31 1 1.7685 5.4779 -1.9562 32 1 0.2761 4.5079 -1.9569 33 1 -0.1686 6.8256 -2.3260 34 1 3.7905 4.6451 0.0002 35 1 5.1402 2.5870 -0.0001 36 1 3.7656 -0.7506 -0.0011 37 1 6.0004 0.7295 -0.8905 38 1 6.0006 0.7287 0.8894 39 1 8.1715 -0.5967 -0.0006 40 1 11.2481 -1.8908 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357191434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:56 Heat of formation + Delta-G solvation = -103.673459 kcal Electronic energy + Delta-G solvation = -22674.079715 eV Core-core repulsion = 19067.857651 eV Total energy + Delta-G solvation = -3606.222063 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.25028 -38.44049 -37.81515 -36.96585 -35.34813 -34.00847 -31.93212 -31.34382 -30.10498 -28.75291 -27.23446 -26.19944 -24.43741 -22.98346 -22.09337 -20.79175 -19.39475 -18.17585 -17.98304 -17.46476 -17.00046 -16.05852 -15.70419 -15.48476 -15.27212 -14.79264 -14.69613 -14.41773 -14.34176 -14.08296 -13.70448 -13.65272 -13.22391 -12.94892 -12.28962 -12.11003 -12.03146 -11.90226 -11.62584 -11.61300 -11.27155 -11.15589 -10.94052 -10.89011 -10.40465 -10.31378 -10.20483 -9.78253 -9.62457 -8.60071 -8.44958 -8.09315 -6.91554 -6.51362 -3.92896 1.49054 1.62752 3.10545 3.22446 3.29140 3.33801 3.69821 3.74095 3.80433 4.11436 4.14566 4.75296 4.88327 4.90813 4.99468 5.05669 5.10427 5.12633 5.16825 5.24633 5.34596 5.42959 5.45624 5.62033 5.74628 5.75724 5.82222 5.91373 5.94084 6.12972 6.23689 6.39296 6.71518 6.86989 7.23902 7.33561 7.46885 7.68368 7.95006 8.18869 8.46993 9.06081 9.40232 9.89019 10.65863 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.027352 B = 0.002749 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.462448 B =10182.242681 C =11048.089312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.317 6.317 3 C 0.049 3.951 4 C -0.153 4.153 5 C -0.124 4.124 6 C -0.067 4.067 7 C 0.079 3.921 8 O -0.579 6.579 9 C -0.093 4.093 10 C -0.176 4.176 11 C 0.211 3.789 12 N -0.719 5.719 13 C 0.113 3.887 14 C 0.430 3.570 15 O -0.592 6.592 16 N -0.553 5.553 17 C -0.302 4.302 18 H 0.105 0.895 19 C 0.024 3.976 20 N -0.897 5.897 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.096 0.904 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.123 0.877 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.378 0.622 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.416 0.584 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.395 0.605 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.309 13.561 -2.019 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.231 6.231 3 C 0.001 3.999 4 C -0.173 4.173 5 C -0.127 4.127 6 C -0.104 4.104 7 C 0.002 3.998 8 O -0.384 6.384 9 C -0.112 4.112 10 C -0.200 4.200 11 C 0.105 3.895 12 N -0.351 5.351 13 C -0.015 4.015 14 C 0.216 3.784 15 O -0.477 6.477 16 N -0.188 5.188 17 C -0.432 4.432 18 H 0.123 0.877 19 C -0.178 4.178 20 N -0.538 5.538 21 Si 0.759 3.241 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.114 0.886 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.225 0.775 34 H 0.138 0.862 35 H 0.148 0.852 36 H 0.256 0.744 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.228 0.772 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.213 12.617 -1.368 20.590 hybrid contribution 0.473 -0.480 -0.632 0.924 sum -15.740 12.137 -2.000 19.977 Atomic orbital electron populations 1.22949 0.78922 1.03556 1.00777 1.86060 1.20804 1.26435 1.89809 1.18397 0.90306 0.84799 1.06408 1.20767 0.99134 0.91244 1.06160 1.19067 0.93495 0.93173 1.06951 1.20278 0.99724 0.94837 0.95596 1.22234 0.94176 0.85935 0.97487 1.86451 1.74823 1.43330 1.33843 1.20655 0.92727 0.97663 1.00136 1.20516 1.00019 0.90013 1.09448 1.17297 0.87176 0.87881 0.97165 1.44438 1.04091 1.06407 1.80153 1.20942 0.81363 0.97364 1.01845 1.19752 0.83573 0.89738 0.85336 1.90517 1.59075 1.41477 1.56675 1.41803 1.04447 1.09403 1.63158 1.19775 0.90661 0.84849 1.47904 0.87702 1.25308 0.95974 0.99589 0.96918 1.69619 1.04589 1.29742 1.49813 0.85764 0.78957 0.81613 0.77809 1.19151 1.20619 1.20621 0.88559 0.93139 0.93056 0.85877 0.90989 0.90623 0.93382 0.93670 0.77489 0.86196 0.85194 0.74429 0.90694 0.90684 0.77158 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.65 9.74 -19.78 -0.19 -4.84 16 3 C 0.05 0.72 6.70 -39.08 -0.26 0.46 16 4 C -0.15 -1.87 8.69 -39.46 -0.34 -2.21 16 5 C -0.12 -1.42 5.14 -104.60 -0.54 -1.96 16 6 C -0.07 -0.65 5.71 -27.89 -0.16 -0.81 16 7 C 0.08 0.69 7.03 37.16 0.26 0.95 16 8 O -0.58 -5.08 13.66 -35.23 -0.48 -5.56 16 9 C -0.09 -1.10 9.69 -39.58 -0.38 -1.48 16 10 C -0.18 -2.40 9.31 -39.41 -0.37 -2.77 16 11 C 0.21 3.32 6.67 -83.56 -0.56 2.76 16 12 N -0.72 -12.85 5.70 -59.67 -0.34 -13.19 16 13 C 0.11 2.03 5.40 -5.20 -0.03 2.00 16 14 C 0.43 10.05 7.85 -10.98 -0.09 9.96 16 15 O -0.59 -15.89 15.24 5.55 0.08 -15.80 16 16 N -0.55 -13.73 5.29 -10.96 -0.06 -13.79 16 17 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 18 H 0.11 3.03 7.16 -52.48 -0.38 2.65 16 19 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 20 N -0.90 -23.90 13.05 55.50 0.72 -23.18 16 21 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 25 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.42 7.65 -51.93 -0.40 0.03 16 27 H 0.05 0.44 7.68 -51.93 -0.40 0.04 16 28 H 0.12 1.23 6.30 -52.49 -0.33 0.90 16 29 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.38 1.60 9.12 45.56 0.42 2.01 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.13 1.62 6.74 -52.48 -0.35 1.27 16 36 H 0.42 8.26 6.80 -40.82 -0.28 7.99 16 37 H 0.08 1.20 7.95 -51.93 -0.41 0.79 16 38 H 0.08 1.21 7.95 -51.93 -0.41 0.79 16 39 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 40 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -32.31 342.94 -6.36 -38.67 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -4.53 Total: 16.52 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.71 Total: 0.33 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.33 Total: -50.15 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.59 Total: -26.21 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.31 -6.36 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357191434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.000 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds