Wall clock time and date at job start Fri Apr 10 2020 17:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36011 * 117.00244 * 2 1 4 4 C 1.38501 * 120.07650 * 359.72780 * 3 2 1 5 5 C 1.38291 * 120.01539 * 179.74067 * 4 3 2 6 6 C 1.50696 * 119.91157 * 180.27262 * 5 4 3 7 7 C 1.52999 * 109.47656 * 270.23779 * 6 5 4 8 8 O 1.42892 * 109.47211 * 180.02562 * 7 6 5 9 9 C 1.38260 * 120.17811 * 0.51353 * 5 4 3 10 10 C 1.38220 * 120.15840 * 359.76564 * 9 5 4 11 11 C 1.38721 * 119.98241 * 359.97438 * 10 9 5 12 12 N 1.39969 * 120.08923 * 179.97438 * 11 10 9 13 13 C 1.46499 * 120.00003 * 0.02562 * 12 11 10 14 14 C 1.50697 * 109.47018 * 179.97438 * 13 12 11 15 15 O 1.21291 * 120.00447 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99771 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99794 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99882 * 359.97438 * 17 16 14 19 19 C 1.38942 * 120.00067 * 179.97438 * 17 16 14 20 20 N 1.31421 * 120.00055 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00440 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46807 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47050 * 119.99774 * 21 19 17 24 24 H 1.48498 * 109.47452 * 240.00134 * 21 19 17 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99837 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99958 * 1 2 3 28 28 H 1.07993 * 119.99461 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.46624 * 30.23966 * 6 5 4 30 30 H 1.09002 * 109.46916 * 150.23518 * 6 5 4 31 31 H 1.08997 * 109.46695 * 300.00246 * 7 6 5 32 32 H 1.09002 * 109.47171 * 59.99895 * 7 6 5 33 33 H 0.96707 * 113.99888 * 180.02562 * 8 7 6 34 34 H 1.08001 * 119.91667 * 179.74403 * 9 5 4 35 35 H 1.08005 * 120.00987 * 179.97438 * 10 9 5 36 36 H 0.97002 * 120.00139 * 180.02562 * 12 11 10 37 37 H 1.08995 * 109.47061 * 300.00090 * 13 12 11 38 38 H 1.09003 * 109.46607 * 59.99937 * 13 12 11 39 39 H 0.96991 * 120.00351 * 359.97438 * 16 14 13 40 40 H 0.96996 * 120.00012 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.2938 2.3744 -0.0057 5 6 1.9230 3.6059 -0.0003 6 6 1.1017 4.8694 -0.0003 7 6 0.8241 5.2974 -1.4427 8 8 0.0458 6.4958 -1.4426 9 6 3.3036 3.6811 0.0001 10 6 4.0619 2.5255 0.0000 11 6 3.4377 1.2867 0.0000 12 7 4.2034 0.1150 -0.0007 13 6 5.6662 0.1960 -0.0008 14 6 6.2462 -1.1949 -0.0010 15 8 5.5103 -2.1590 -0.0014 16 7 7.5829 -1.3676 -0.0006 17 6 8.1106 -2.6329 -0.0012 18 1 7.4552 -3.4914 -0.0016 19 6 9.4886 -2.8110 -0.0014 20 7 10.2862 -1.7664 -0.0014 21 14 10.2077 -4.5350 -0.0015 22 1 9.1061 -5.5308 -0.0008 23 1 11.0442 -4.7223 -1.2142 24 1 11.0445 -4.7225 1.2108 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 0.2153 2.3193 -0.0106 29 1 0.1573 4.6888 0.5133 30 1 1.6497 5.6590 0.5140 31 1 1.7685 5.4779 -1.9562 32 1 0.2761 4.5079 -1.9569 33 1 -0.1686 6.8256 -2.3260 34 1 3.7905 4.6451 0.0002 35 1 5.1402 2.5870 -0.0001 36 1 3.7656 -0.7506 -0.0011 37 1 6.0004 0.7295 -0.8905 38 1 6.0006 0.7287 0.8894 39 1 8.1715 -0.5967 -0.0006 40 1 11.2481 -1.8908 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357191434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:56 Heat of formation + Delta-G solvation = -128.904931 kcal Electronic energy + Delta-G solvation = -22675.173833 eV Core-core repulsion = 19067.857651 eV Total energy + Delta-G solvation = -3607.316182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28072 -40.24029 -38.70589 -37.80856 -36.58574 -35.89428 -33.41133 -32.86522 -31.08563 -29.86999 -28.29870 -27.41138 -26.12670 -23.84076 -23.16417 -21.79312 -21.10559 -20.02924 -19.13137 -18.44865 -17.92627 -17.33646 -16.96913 -16.68069 -16.52386 -16.23629 -16.02972 -15.87992 -15.34205 -15.09004 -15.01367 -14.70534 -14.32923 -14.25936 -13.89546 -13.54893 -13.32707 -12.93163 -12.86636 -12.73787 -12.46414 -12.34068 -12.18556 -12.13713 -11.85417 -11.80064 -11.59252 -10.86836 -10.83203 -10.54255 -10.09940 -9.43397 -8.52423 -8.06224 -6.02053 0.50034 0.62560 1.33775 1.41109 1.54996 1.91666 2.19662 2.36392 2.57115 2.85147 3.14749 3.18263 3.44010 3.90014 4.12310 4.14445 4.20148 4.30866 4.38956 4.40513 4.41795 4.44293 4.49795 4.55068 4.62801 4.68214 4.73720 4.90077 5.04273 5.16682 5.25560 5.36855 5.42557 5.77033 5.86694 5.94128 6.17058 6.49545 6.60845 6.83680 6.92203 7.04139 7.44555 7.97405 8.64768 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.027352 B = 0.002749 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.462448 B =10182.242681 C =11048.089312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.347 6.347 3 C 0.035 3.965 4 C -0.153 4.153 5 C -0.113 4.113 6 C -0.066 4.066 7 C 0.082 3.918 8 O -0.595 6.595 9 C -0.096 4.096 10 C -0.177 4.177 11 C 0.177 3.823 12 N -0.736 5.736 13 C 0.130 3.870 14 C 0.429 3.571 15 O -0.631 6.631 16 N -0.560 5.560 17 C -0.337 4.337 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.915 5.915 21 Si 0.995 3.005 22 H -0.274 1.274 23 H -0.269 1.269 24 H -0.269 1.269 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.145 0.855 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.397 0.603 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.403 0.597 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.400 0.600 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.804 15.315 -2.212 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.262 6.262 3 C -0.013 4.013 4 C -0.173 4.173 5 C -0.115 4.115 6 C -0.103 4.103 7 C 0.004 3.996 8 O -0.403 6.403 9 C -0.114 4.114 10 C -0.200 4.200 11 C 0.074 3.926 12 N -0.368 5.368 13 C 0.002 3.998 14 C 0.217 3.783 15 O -0.519 6.519 16 N -0.196 5.196 17 C -0.467 4.467 18 H 0.098 0.902 19 C -0.210 4.210 20 N -0.555 5.555 21 Si 0.818 3.182 22 H -0.199 1.199 23 H -0.194 1.194 24 H -0.194 1.194 25 H 0.126 0.874 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.162 0.838 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.247 0.753 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.239 0.761 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.235 0.765 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.722 14.448 -1.575 22.155 hybrid contribution 0.481 -0.907 -0.582 1.180 sum -16.241 13.541 -2.157 21.255 Atomic orbital electron populations 1.23223 0.76801 1.04896 1.02051 1.86026 1.23184 1.26991 1.89980 1.18651 0.90325 0.85584 1.06700 1.21020 1.00171 0.90673 1.05396 1.19354 0.93707 0.93712 1.04768 1.20286 0.99582 0.93903 0.96562 1.22156 0.94563 0.86196 0.96680 1.86396 1.74811 1.43275 1.35852 1.20957 0.92969 0.98111 0.99392 1.20738 1.00729 0.89815 1.08745 1.17617 0.87807 0.87713 0.99477 1.44361 1.03715 1.06573 1.82161 1.20812 0.81685 0.93530 1.03734 1.20691 0.82866 0.91633 0.83155 1.90485 1.59911 1.43653 1.57849 1.41831 1.05172 1.08849 1.63756 1.19712 0.91225 0.85348 1.50383 0.90228 1.26075 0.95689 1.03371 0.95847 1.69669 1.05098 1.31258 1.49450 0.84848 0.77957 0.76919 0.78469 1.19875 1.19406 1.19441 0.87382 0.91696 0.91783 0.83776 0.90643 0.90138 0.92919 0.93280 0.75268 0.83718 0.84340 0.76065 0.88576 0.88651 0.76508 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 16 2 O -0.35 -10.24 9.74 -93.68 -0.91 -11.15 16 3 C 0.04 1.02 6.70 22.59 0.15 1.17 16 4 C -0.15 -3.46 8.69 22.35 0.19 -3.26 16 5 C -0.11 -2.31 5.14 -19.85 -0.10 -2.41 16 6 C -0.07 -1.08 5.71 29.85 0.17 -0.91 16 7 C 0.08 1.19 7.03 71.98 0.51 1.70 16 8 O -0.59 -8.83 13.66 -148.98 -2.03 -10.86 16 9 C -0.10 -2.03 9.69 22.27 0.22 -1.81 16 10 C -0.18 -4.57 9.31 22.38 0.21 -4.36 16 11 C 0.18 5.53 6.67 38.22 0.25 5.78 16 12 N -0.74 -26.76 5.70 -342.70 -1.95 -28.72 16 13 C 0.13 4.66 5.40 85.63 0.46 5.12 16 14 C 0.43 20.57 7.85 87.66 0.69 21.26 16 15 O -0.63 -35.30 15.24 -3.06 -0.05 -35.35 16 16 N -0.56 -28.46 5.29 -306.98 -1.62 -30.08 16 17 C -0.34 -19.00 9.68 84.04 0.81 -18.19 16 18 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 19 C -0.01 -0.48 5.50 84.92 0.47 -0.02 16 20 N -0.91 -48.42 13.05 21.66 0.28 -48.14 16 21 Si 0.99 42.38 29.55 68.60 2.03 44.41 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 25 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 0.99 7.65 -2.39 -0.02 0.98 16 27 H 0.06 1.00 7.68 -2.38 -0.02 0.98 16 28 H 0.14 2.54 6.30 -2.91 -0.02 2.52 16 29 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 30 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.40 2.31 9.12 -74.05 -0.68 1.64 16 34 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.14 3.22 6.74 -2.91 -0.02 3.20 16 36 H 0.40 16.72 6.80 -92.71 -0.63 16.08 16 37 H 0.10 3.00 7.95 -2.39 -0.02 2.98 16 38 H 0.10 3.00 7.95 -2.39 -0.02 2.98 16 39 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 40 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -70.59 342.94 -0.06 -70.65 By element: Atomic # 1 Polarization: 44.55 SS G_CDS: -0.94 Total: 43.61 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 5.14 Total: 5.63 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -3.30 Total: -106.94 kcal Atomic # 8 Polarization: -54.36 SS G_CDS: -2.99 Total: -57.36 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -70.59 -0.06 -70.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357191434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.257 kcal (2) G-P(sol) polarization free energy of solvation -70.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds