Wall clock time and date at job start Fri Apr 10 2020 17:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00313 * 2 1 4 4 C 1.52997 * 109.47396 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47319 * 64.99884 * 4 3 2 6 6 C 1.35897 * 117.00481 * 180.02562 * 5 4 3 7 7 C 1.38821 * 120.01275 * 359.72205 * 6 5 4 8 8 C 1.38173 * 120.08789 * 179.72138 * 7 6 5 9 9 C 1.38157 * 120.13180 * 0.55631 * 8 7 6 10 10 C 1.38929 * 120.03217 * 359.71781 * 9 8 7 11 11 N 1.39664 * 120.04617 * 180.02562 * 10 9 8 12 12 C 1.46504 * 119.99630 * 359.97438 * 11 10 9 13 13 C 1.50706 * 109.46765 * 179.97438 * 12 11 10 14 14 O 1.21294 * 120.00209 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99837 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00063 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99931 * 0.02562 * 16 15 13 18 18 C 1.38953 * 119.99921 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99634 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00190 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47135 * 89.99544 * 20 18 16 22 22 H 1.48500 * 109.47053 * 209.99738 * 20 18 16 23 23 H 1.48505 * 109.46900 * 329.99438 * 20 18 16 24 24 C 1.38564 * 120.02346 * 180.02562 * 6 5 4 25 25 H 1.08999 * 109.46799 * 300.00326 * 1 2 3 26 26 H 1.08998 * 109.47187 * 59.99969 * 1 2 3 27 27 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46993 * 59.99365 * 3 2 1 29 29 H 1.09004 * 109.46505 * 300.00140 * 3 2 1 30 30 H 1.09002 * 109.47153 * 304.99576 * 4 3 2 31 31 H 1.09001 * 109.46832 * 184.99767 * 4 3 2 32 32 H 1.08000 * 119.95252 * 0.02562 * 7 6 5 33 33 H 1.08007 * 119.93164 * 180.27734 * 8 7 6 34 34 H 1.07999 * 119.98069 * 179.74516 * 9 8 7 35 35 H 0.97000 * 120.00446 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47492 * 299.99129 * 12 11 10 37 37 H 1.08996 * 109.47421 * 60.00534 * 12 11 10 38 38 H 0.97005 * 120.00373 * 359.97438 * 15 13 12 39 39 H 0.96998 * 119.99721 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.06257 * 359.97421 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3019 0.3977 -1.3837 7 6 6.1827 0.7993 -0.3887 8 6 7.5420 0.6099 -0.5491 9 6 8.0299 0.0309 -1.7047 10 6 7.1536 -0.3678 -2.7063 11 7 7.6465 -0.9536 -3.8744 12 6 9.0887 -1.1475 -4.0443 13 6 9.3547 -1.7942 -5.3793 14 8 8.4305 -2.0667 -6.1161 15 7 10.6194 -2.0706 -5.7541 16 6 10.8614 -2.6594 -6.9684 17 1 10.0385 -2.9013 -7.6248 18 6 12.1654 -2.9439 -7.3549 19 7 12.3972 -3.5087 -8.5186 20 14 13.5886 -2.5249 -6.2199 21 1 13.8654 -3.6784 -5.3266 22 1 14.7964 -2.2254 -7.0303 23 1 13.2354 -1.3378 -5.4006 24 6 5.7871 -0.1828 -2.5445 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8515 0.5683 0.8410 31 1 3.9785 2.1765 0.0889 32 1 5.8046 1.2559 0.5140 33 1 8.2247 0.9192 0.2286 34 1 9.0931 -0.1123 -1.8292 35 1 7.0340 -1.2320 -4.5732 36 1 9.5927 -0.1821 -4.0010 37 1 9.4651 -1.7901 -3.2484 38 1 11.3585 -1.8531 -5.1647 39 1 13.3075 -3.7076 -8.7883 40 1 5.1036 -0.4917 -3.3216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425969549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:21 Heat of formation + Delta-G solvation = -85.367856 kcal Electronic energy + Delta-G solvation = -22156.149659 eV Core-core repulsion = 18550.721386 eV Total energy + Delta-G solvation = -3605.428273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.16094 -38.88661 -38.25517 -37.42493 -34.78761 -33.95151 -31.82096 -31.47250 -30.11366 -28.94357 -26.97985 -26.57621 -24.34510 -23.40833 -22.50217 -20.95441 -19.55865 -18.56988 -18.32563 -17.15618 -16.61023 -16.50366 -15.80774 -15.68091 -15.40007 -15.36023 -15.02179 -14.89735 -14.62454 -14.08766 -13.51194 -13.31729 -13.14818 -12.99130 -12.72590 -12.53589 -12.24712 -12.20330 -12.02573 -11.66465 -11.46541 -11.28093 -11.07039 -10.83302 -10.66394 -10.08403 -10.06942 -9.87674 -9.69896 -8.76589 -8.31439 -8.22981 -7.27324 -6.41044 -3.93700 1.58212 1.72317 2.96709 2.97299 3.01611 3.10402 3.35663 3.55430 3.68406 3.98417 4.02176 4.53098 4.55183 4.73415 4.85050 4.92512 4.96902 5.01318 5.04424 5.12835 5.20434 5.25827 5.33522 5.37451 5.47353 5.54280 5.67747 5.73665 5.75299 6.03342 6.37300 6.40766 6.60936 6.66628 6.74558 7.36167 7.46236 7.55276 7.95885 8.06671 8.45110 8.81750 9.29198 9.63517 10.71301 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034806 B = 0.002355 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.262273 B =11887.359047 C =12578.563096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.063 3.937 5 O -0.309 6.309 6 C 0.174 3.826 7 C -0.277 4.277 8 C -0.034 4.034 9 C -0.238 4.238 10 C 0.264 3.736 11 N -0.721 5.721 12 C 0.111 3.889 13 C 0.439 3.561 14 O -0.575 6.575 15 N -0.578 5.578 16 C -0.310 4.310 17 H 0.121 0.879 18 C 0.044 3.956 19 N -0.874 5.874 20 Si 0.881 3.119 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.268 1.268 24 C -0.233 4.233 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.413 0.587 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.373 0.627 39 H 0.275 0.725 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.620 11.502 21.097 28.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.015 4.015 4 C -0.012 4.012 5 O -0.222 6.222 6 C 0.128 3.872 7 C -0.297 4.297 8 C -0.052 4.052 9 C -0.261 4.261 10 C 0.157 3.843 11 N -0.351 5.351 12 C -0.018 4.018 13 C 0.225 3.775 14 O -0.459 6.459 15 N -0.216 5.216 16 C -0.438 4.438 17 H 0.139 0.861 18 C -0.160 4.160 19 N -0.514 5.514 20 Si 0.707 3.293 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.193 1.193 24 C -0.256 4.256 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.252 0.748 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.207 0.793 39 H 0.086 0.914 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.903 10.965 20.241 27.423 hybrid contribution 0.988 0.492 0.696 1.305 sum -13.915 11.458 20.937 27.627 Atomic orbital electron populations 1.22762 0.80871 1.03046 0.99897 1.87988 1.19779 1.27085 1.95388 1.22595 0.91799 0.85791 1.01296 1.22782 0.93355 0.98259 0.86849 1.86095 1.20619 1.76805 1.38685 1.18540 0.81726 0.93400 0.93505 1.20857 0.94175 1.13794 1.00915 1.20586 0.94329 0.94401 0.95933 1.20582 0.99212 1.10716 0.95613 1.17465 0.91375 0.89311 0.86199 1.44518 1.06575 1.65700 1.18279 1.20982 0.82769 1.00738 0.97304 1.19642 0.83878 0.85538 0.88485 1.90554 1.43041 1.57479 1.54843 1.42124 1.05882 1.54996 1.18591 1.19445 0.95425 1.35678 0.93296 0.86127 1.25075 0.97569 0.96942 0.96418 1.69619 1.21687 1.40550 1.19494 0.86655 0.82745 0.79053 0.80896 1.19414 1.19992 1.19324 1.19631 0.93579 1.13025 0.99408 0.94153 0.93889 0.89439 0.91233 0.92064 0.91097 0.90456 0.86349 0.86191 0.86004 0.74798 0.90403 0.90390 0.79348 0.91394 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.92 10.67 -40.08 -0.43 -4.34 16 3 C 0.06 0.47 6.32 37.16 0.23 0.71 16 4 C 0.06 0.56 5.12 37.16 0.19 0.75 16 5 O -0.31 -4.01 10.10 -24.26 -0.25 -4.25 16 6 C 0.17 2.38 6.68 -39.25 -0.26 2.12 16 7 C -0.28 -3.27 9.04 -39.39 -0.36 -3.62 16 8 C -0.03 -0.39 10.03 -39.64 -0.40 -0.79 16 9 C -0.24 -3.18 9.31 -39.36 -0.37 -3.55 16 10 C 0.26 3.98 6.65 -83.81 -0.56 3.42 16 11 N -0.72 -11.91 5.70 -59.82 -0.34 -12.26 16 12 C 0.11 1.82 5.39 -5.19 -0.03 1.80 16 13 C 0.44 9.70 7.85 -10.98 -0.09 9.61 16 14 O -0.58 -15.00 15.24 5.55 0.08 -14.92 16 15 N -0.58 -13.37 5.09 -10.96 -0.06 -13.43 16 16 C -0.31 -8.58 10.16 -14.93 -0.15 -8.74 16 17 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 18 C 0.04 1.18 5.50 -17.47 -0.10 1.09 16 19 N -0.87 -25.05 13.96 55.50 0.77 -24.28 16 20 Si 0.88 18.81 27.74 -169.99 -4.71 14.10 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.17 6.52 56.52 0.37 -4.80 16 24 C -0.23 -3.47 9.83 -39.24 -0.39 -3.86 16 25 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 31 H 0.08 0.52 7.65 -51.93 -0.40 0.12 16 32 H 0.12 1.10 6.29 -52.49 -0.33 0.77 16 33 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.12 1.47 6.73 -52.49 -0.35 1.11 16 35 H 0.41 7.35 7.45 -40.82 -0.30 7.05 16 36 H 0.08 1.13 7.95 -51.93 -0.41 0.72 16 37 H 0.08 1.13 7.95 -51.93 -0.41 0.72 16 38 H 0.37 7.48 5.76 -40.82 -0.24 7.24 16 39 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -33.18 342.09 -6.28 -39.46 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -5.36 Total: 14.50 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.15 Total: 0.26 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.38 Total: -49.96 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.59 Total: -23.51 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.71 Total: 14.10 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.18 -6.28 -39.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425969549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.910 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds