Wall clock time and date at job start Fri Apr 10 2020 17:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00313 * 2 1 4 4 C 1.52997 * 109.47396 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47319 * 64.99884 * 4 3 2 6 6 C 1.35897 * 117.00481 * 180.02562 * 5 4 3 7 7 C 1.38821 * 120.01275 * 359.72205 * 6 5 4 8 8 C 1.38173 * 120.08789 * 179.72138 * 7 6 5 9 9 C 1.38157 * 120.13180 * 0.55631 * 8 7 6 10 10 C 1.38929 * 120.03217 * 359.71781 * 9 8 7 11 11 N 1.39664 * 120.04617 * 180.02562 * 10 9 8 12 12 C 1.46504 * 119.99630 * 359.97438 * 11 10 9 13 13 C 1.50706 * 109.46765 * 179.97438 * 12 11 10 14 14 O 1.21294 * 120.00209 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99837 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00063 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99931 * 0.02562 * 16 15 13 18 18 C 1.38953 * 119.99921 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99634 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00190 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47135 * 89.99544 * 20 18 16 22 22 H 1.48500 * 109.47053 * 209.99738 * 20 18 16 23 23 H 1.48505 * 109.46900 * 329.99438 * 20 18 16 24 24 C 1.38564 * 120.02346 * 180.02562 * 6 5 4 25 25 H 1.08999 * 109.46799 * 300.00326 * 1 2 3 26 26 H 1.08998 * 109.47187 * 59.99969 * 1 2 3 27 27 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46993 * 59.99365 * 3 2 1 29 29 H 1.09004 * 109.46505 * 300.00140 * 3 2 1 30 30 H 1.09002 * 109.47153 * 304.99576 * 4 3 2 31 31 H 1.09001 * 109.46832 * 184.99767 * 4 3 2 32 32 H 1.08000 * 119.95252 * 0.02562 * 7 6 5 33 33 H 1.08007 * 119.93164 * 180.27734 * 8 7 6 34 34 H 1.07999 * 119.98069 * 179.74516 * 9 8 7 35 35 H 0.97000 * 120.00446 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47492 * 299.99129 * 12 11 10 37 37 H 1.08996 * 109.47421 * 60.00534 * 12 11 10 38 38 H 0.97005 * 120.00373 * 359.97438 * 15 13 12 39 39 H 0.96998 * 119.99721 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.06257 * 359.97421 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3019 0.3977 -1.3837 7 6 6.1827 0.7993 -0.3887 8 6 7.5420 0.6099 -0.5491 9 6 8.0299 0.0309 -1.7047 10 6 7.1536 -0.3678 -2.7063 11 7 7.6465 -0.9536 -3.8744 12 6 9.0887 -1.1475 -4.0443 13 6 9.3547 -1.7942 -5.3793 14 8 8.4305 -2.0667 -6.1161 15 7 10.6194 -2.0706 -5.7541 16 6 10.8614 -2.6594 -6.9684 17 1 10.0385 -2.9013 -7.6248 18 6 12.1654 -2.9439 -7.3549 19 7 12.3972 -3.5087 -8.5186 20 14 13.5886 -2.5249 -6.2199 21 1 13.8654 -3.6784 -5.3266 22 1 14.7964 -2.2254 -7.0303 23 1 13.2354 -1.3378 -5.4006 24 6 5.7871 -0.1828 -2.5445 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8515 0.5683 0.8410 31 1 3.9785 2.1765 0.0889 32 1 5.8046 1.2559 0.5140 33 1 8.2247 0.9192 0.2286 34 1 9.0931 -0.1123 -1.8292 35 1 7.0340 -1.2320 -4.5732 36 1 9.5927 -0.1821 -4.0010 37 1 9.4651 -1.7901 -3.2484 38 1 11.3585 -1.8531 -5.1647 39 1 13.3075 -3.7076 -8.7883 40 1 5.1036 -0.4917 -3.3216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425969549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:20 Heat of formation + Delta-G solvation = -110.842711 kcal Electronic energy + Delta-G solvation = -22157.254332 eV Core-core repulsion = 18550.721386 eV Total energy + Delta-G solvation = -3606.532945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13319 -40.47143 -39.18832 -38.32582 -36.31221 -35.55880 -33.84516 -32.26469 -31.14450 -29.93989 -28.33064 -27.22571 -26.03079 -24.19531 -23.52338 -21.94695 -21.37128 -20.40523 -19.32621 -18.02363 -17.79569 -17.45315 -17.10289 -16.57563 -16.54762 -16.44452 -16.13933 -16.09165 -15.99836 -15.27698 -14.87955 -14.49796 -14.46396 -14.38100 -14.06053 -13.81122 -13.47605 -13.16892 -12.95893 -12.75460 -12.45483 -12.36897 -12.34737 -11.99305 -11.88370 -11.71074 -11.57900 -10.89341 -10.66574 -10.64695 -10.32806 -9.22657 -8.45595 -8.37310 -6.08500 0.59742 0.72486 1.30840 1.35234 1.45431 1.81108 2.03996 2.21546 2.51663 2.82035 2.96191 2.98936 3.10552 3.91257 3.99926 4.07887 4.14510 4.26224 4.33038 4.37439 4.39733 4.45724 4.48149 4.51994 4.53011 4.56074 4.69479 4.75988 4.86211 5.00697 5.35852 5.45313 5.47707 5.65900 5.73814 5.86848 6.19572 6.33559 6.52174 6.57489 6.72173 6.78996 7.29088 7.81014 8.71325 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034806 B = 0.002355 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.262273 B =11887.359047 C =12578.563096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.058 3.942 4 C 0.054 3.946 5 O -0.332 6.332 6 C 0.164 3.836 7 C -0.270 4.270 8 C -0.029 4.029 9 C -0.244 4.244 10 C 0.246 3.754 11 N -0.736 5.736 12 C 0.126 3.874 13 C 0.440 3.560 14 O -0.623 6.623 15 N -0.577 5.577 16 C -0.335 4.335 17 H 0.056 0.944 18 C -0.013 4.013 19 N -0.929 5.929 20 Si 0.965 3.035 21 H -0.255 1.255 22 H -0.275 1.275 23 H -0.227 1.227 24 C -0.258 4.258 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.140 0.860 35 H 0.401 0.599 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.394 0.606 39 H 0.281 0.719 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.144 13.733 25.539 31.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.018 4.018 4 C -0.021 4.021 5 O -0.246 6.246 6 C 0.118 3.882 7 C -0.291 4.291 8 C -0.047 4.047 9 C -0.267 4.267 10 C 0.142 3.858 11 N -0.366 5.366 12 C -0.002 4.002 13 C 0.228 3.772 14 O -0.509 6.509 15 N -0.217 5.217 16 C -0.464 4.464 17 H 0.074 0.926 18 C -0.212 4.212 19 N -0.569 5.569 20 Si 0.785 3.215 21 H -0.180 1.180 22 H -0.200 1.200 23 H -0.150 1.150 24 C -0.282 4.282 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.166 0.834 33 H 0.174 0.826 34 H 0.158 0.842 35 H 0.238 0.762 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.230 0.770 39 H 0.091 0.909 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.452 13.226 24.735 31.108 hybrid contribution 0.300 -0.185 -0.675 0.762 sum -13.152 13.040 24.060 30.363 Atomic orbital electron populations 1.22910 0.79424 1.03646 1.01051 1.87933 1.21586 1.28759 1.95664 1.22782 0.91020 0.85174 1.02788 1.23143 0.94290 0.99299 0.85358 1.86078 1.20392 1.77268 1.40886 1.18699 0.82529 0.93408 0.93565 1.21232 0.94165 1.12538 1.01116 1.21025 0.94778 0.92906 0.96011 1.20876 0.99823 1.10466 0.95496 1.17625 0.91700 0.90253 0.86265 1.44538 1.06271 1.67012 1.18829 1.20974 0.83335 1.02102 0.93778 1.20784 0.82811 0.83668 0.89960 1.90539 1.44577 1.58824 1.56965 1.41895 1.07076 1.55254 1.17477 1.19008 0.94467 1.38052 0.94831 0.92574 1.26183 1.00856 0.95831 0.98356 1.69800 1.22968 1.41868 1.22216 0.85362 0.76977 0.80652 0.78556 1.17959 1.19954 1.14955 1.19723 0.93832 1.14519 1.00141 0.92124 0.93547 0.89266 0.87941 0.92209 0.90659 0.87955 0.83435 0.82588 0.84223 0.76240 0.87288 0.87293 0.76973 0.90927 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -8.23 10.67 -144.35 -1.54 -9.77 16 3 C 0.06 0.79 6.32 71.98 0.45 1.25 16 4 C 0.05 0.84 5.12 71.98 0.37 1.20 16 5 O -0.33 -8.44 10.10 -87.76 -0.89 -9.32 16 6 C 0.16 4.32 6.68 22.49 0.15 4.47 16 7 C -0.27 -5.50 9.04 22.39 0.20 -5.30 16 8 C -0.03 -0.55 10.03 22.23 0.22 -0.33 16 9 C -0.24 -5.70 9.31 22.42 0.21 -5.50 16 10 C 0.25 7.21 6.65 38.20 0.25 7.47 16 11 N -0.74 -24.15 5.70 -343.18 -1.96 -26.11 16 12 C 0.13 3.87 5.39 85.63 0.46 4.33 16 13 C 0.44 19.54 7.85 87.66 0.69 20.23 16 14 O -0.62 -34.12 15.24 -3.07 -0.05 -34.17 16 15 N -0.58 -26.46 5.09 -306.97 -1.56 -28.02 16 16 C -0.33 -19.30 10.16 84.04 0.85 -18.44 16 17 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 18 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 19 N -0.93 -55.21 13.96 21.66 0.30 -54.91 16 20 Si 0.97 37.46 27.74 68.60 1.90 39.36 16 21 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 22 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.23 -7.23 6.52 99.48 0.65 -6.58 16 24 C -0.26 -7.84 9.83 22.49 0.22 -7.61 16 25 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.08 1.09 7.67 -2.39 -0.02 1.08 16 31 H 0.10 1.04 7.65 -2.39 -0.02 1.02 16 32 H 0.15 2.07 6.29 -2.91 -0.02 2.05 16 33 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.14 2.70 6.73 -2.91 -0.02 2.68 16 35 H 0.40 14.97 7.45 -92.71 -0.69 14.28 16 36 H 0.11 2.73 7.95 -2.39 -0.02 2.71 16 37 H 0.11 2.73 7.95 -2.39 -0.02 2.71 16 38 H 0.39 14.61 5.76 -92.70 -0.53 14.07 16 39 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.11 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -79.12 342.09 1.80 -77.31 By element: Atomic # 1 Polarization: 42.72 SS G_CDS: -0.21 Total: 42.51 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.80 Total: 3.11 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -3.22 Total: -109.03 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -2.47 Total: -53.26 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 1.90 Total: 39.36 kcal Total: -79.12 1.80 -77.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425969549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.529 kcal (2) G-P(sol) polarization free energy of solvation -79.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds