Wall clock time and date at job start Fri Apr 10 2020 17:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00590 * 2 1 4 4 O 1.20825 * 119.99636 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00199 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.46997 * 299.99591 * 5 3 2 7 7 C 1.52995 * 109.47394 * 59.99881 * 5 3 2 8 8 C 1.52999 * 109.47551 * 180.02562 * 7 5 3 9 9 C 1.53007 * 109.46768 * 300.00162 * 8 7 5 10 10 H 1.09006 * 109.46788 * 299.99581 * 9 8 7 11 11 C 1.50693 * 109.47052 * 179.97438 * 9 8 7 12 12 O 1.21300 * 119.99943 * 247.64584 * 11 9 8 13 13 N 1.34775 * 120.00187 * 67.64927 * 11 9 8 14 14 C 1.37096 * 120.00043 * 3.67755 * 13 11 9 15 15 H 1.08001 * 119.99912 * 14.11331 * 14 13 11 16 16 C 1.38952 * 119.99781 * 194.11242 * 14 13 11 17 17 N 1.31407 * 120.00548 * 11.49558 * 16 14 13 18 18 Si 1.86807 * 119.99477 * 191.49761 * 16 14 13 19 19 H 1.48496 * 109.47210 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46794 * 120.00145 * 18 16 14 21 21 H 1.48501 * 109.46962 * 239.99716 * 18 16 14 22 22 C 1.46501 * 120.00098 * 183.67924 * 13 11 9 23 23 C 1.47205 * 109.47208 * 83.74225 * 22 13 11 24 24 N 9.22059 * 172.27080 * 251.38980 * 2 1 3 25 25 C 1.52995 * 109.47217 * 59.99634 * 9 8 7 26 26 C 1.52999 * 109.47009 * 180.02562 * 5 3 2 27 27 H 1.09003 * 109.47155 * 300.00698 * 1 2 3 28 28 H 1.09005 * 109.47101 * 59.99812 * 1 2 3 29 29 H 1.08998 * 109.47621 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47152 * 300.00010 * 7 5 3 31 31 H 1.09006 * 109.47285 * 59.99887 * 7 5 3 32 32 H 1.08992 * 109.47337 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47461 * 59.99341 * 8 7 5 34 34 H 0.96995 * 120.00066 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.47717 * 203.73966 * 22 13 11 36 36 H 1.08998 * 109.47380 * 323.74615 * 22 13 11 37 37 H 1.09006 * 109.47285 * 60.00251 * 25 9 8 38 38 H 1.08997 * 109.47152 * 180.02562 * 25 9 8 39 39 H 1.08995 * 109.47794 * 59.99341 * 26 5 3 40 40 H 1.09006 * 109.46626 * 299.99474 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9564 0.7804 0.8892 7 6 4.1129 0.5814 -1.2501 8 6 5.6409 0.6608 -1.2504 9 6 6.0752 2.1279 -1.2500 10 1 5.6855 2.6224 -2.1398 11 6 7.5801 2.2062 -1.2496 12 8 8.1649 2.6364 -0.2779 13 7 8.2764 1.7982 -2.3291 14 6 7.6140 1.3829 -3.4552 15 1 6.5606 1.5914 -3.5699 16 6 8.2981 0.6937 -4.4492 17 7 9.5107 0.2421 -4.2202 18 14 7.4938 0.4092 -6.1110 19 1 6.1367 1.0119 -6.1139 20 1 8.3179 1.0388 -7.1740 21 1 7.3875 -1.0499 -6.3662 22 6 9.7411 1.7985 -2.2990 23 6 10.2192 0.5589 -1.6649 24 7 10.5888 -0.3957 -1.1752 25 6 5.5287 2.8212 -0.0004 26 6 4.0002 2.7419 0.0002 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.8038 -0.4638 -1.2502 31 1 3.7229 1.0757 -2.1399 32 1 6.0302 0.1672 -2.1408 33 1 6.0306 0.1663 -0.3607 34 1 9.9880 -0.2392 -4.9139 35 1 10.1255 1.8572 -3.3173 36 1 10.0927 2.6576 -1.7278 37 1 5.9184 2.3267 0.8894 38 1 5.8378 3.8665 -0.0004 39 1 3.6109 3.2356 0.8905 40 1 3.6102 3.2365 -0.8894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435681667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:30 Heat of formation + Delta-G solvation = -116.318622 kcal Electronic energy + Delta-G solvation = -24231.984791 eV Core-core repulsion = 20625.214393 eV Total energy + Delta-G solvation = -3606.770399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78413 -40.91099 -38.68253 -37.51560 -37.22189 -36.35666 -33.44142 -32.65882 -31.69374 -29.43298 -28.51717 -26.72247 -25.04413 -23.54037 -22.27676 -21.05037 -20.66208 -19.46785 -18.53354 -18.12704 -17.87756 -17.66360 -17.33626 -16.32112 -16.07017 -15.69836 -15.43195 -15.02793 -14.84027 -14.71746 -14.36666 -14.18438 -13.88269 -13.61129 -13.50613 -13.20767 -13.09582 -13.06966 -12.88386 -12.80937 -12.49323 -12.38521 -12.17386 -12.06291 -11.99101 -11.84581 -11.76731 -11.39908 -11.26875 -11.14454 -10.96262 -10.24160 -9.91142 -8.24366 -5.88633 1.16449 1.46953 1.58169 1.68100 1.77860 1.83313 2.07548 2.28537 2.39679 3.10609 3.14650 3.61802 3.67889 3.75940 3.83091 4.17660 4.23058 4.29286 4.33577 4.35842 4.42925 4.50814 4.55182 4.59580 4.72807 4.75779 4.92811 5.03843 5.08692 5.15306 5.16838 5.24546 5.28773 5.40958 5.48405 5.54520 5.58225 5.75706 6.43515 6.73356 6.97898 7.15012 7.53549 7.93313 8.75489 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.004727 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.506234 B = 5921.949368 C = 6843.091715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.079 4.079 6 H 0.119 0.881 7 C -0.096 4.096 8 C -0.102 4.102 9 C -0.084 4.084 10 H 0.100 0.900 11 C 0.459 3.541 12 O -0.626 6.626 13 N -0.452 5.452 14 C -0.330 4.330 15 H 0.124 0.876 16 C -0.003 4.003 17 N -0.906 5.906 18 Si 0.986 3.014 19 H -0.252 1.252 20 H -0.281 1.281 21 H -0.294 1.294 22 C 0.220 3.780 23 C 0.268 3.732 24 N -0.522 5.522 25 C -0.088 4.088 26 C -0.091 4.091 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.129 0.871 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.270 0.730 35 H 0.147 0.853 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.055 1.656 1.550 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.097 4.097 6 H 0.137 0.863 7 C -0.133 4.133 8 C -0.140 4.140 9 C -0.105 4.105 10 H 0.118 0.882 11 C 0.250 3.750 12 O -0.513 6.513 13 N -0.171 5.171 14 C -0.457 4.457 15 H 0.142 0.858 16 C -0.204 4.204 17 N -0.547 5.547 18 Si 0.812 3.188 19 H -0.175 1.175 20 H -0.207 1.207 21 H -0.220 1.220 22 C 0.093 3.907 23 C -0.049 4.049 24 N -0.203 5.203 25 C -0.126 4.126 26 C -0.129 4.129 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.164 0.836 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.321 0.646 2.611 14.571 hybrid contribution -0.094 -0.016 -1.010 1.015 sum -14.415 0.630 1.601 14.517 Atomic orbital electron populations 1.23542 0.74998 1.05590 1.02514 1.86527 1.24872 1.32951 1.83576 1.24035 0.92305 0.81088 0.70909 1.90636 1.67839 1.37238 1.46737 1.21203 0.85823 0.99816 1.02907 0.86291 1.21447 0.94367 1.01612 0.95908 1.21411 0.95350 0.94393 1.02884 1.21078 0.90206 0.98462 1.00710 0.88177 1.21040 0.91194 0.81210 0.81583 1.90537 1.72540 1.52642 1.35537 1.43886 1.03585 1.56666 1.12987 1.20163 0.96793 1.34582 0.94181 0.85836 1.25955 0.96428 0.95146 1.02825 1.69960 1.13493 1.36268 1.34950 0.84934 0.79129 0.77107 0.77679 1.17498 1.20695 1.22040 1.19025 0.82619 0.86501 1.02545 1.29887 0.91273 0.94704 0.89043 1.80800 1.11217 1.13044 1.15217 1.21256 0.93974 1.00699 0.96679 1.21377 0.94597 0.93266 1.03643 0.91909 0.91968 0.85278 0.89356 0.90551 0.90306 0.93180 0.91924 0.83573 0.88776 0.92357 0.91530 0.90560 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.73 10.47 -51.45 -0.54 -8.27 16 3 C 0.47 11.41 7.26 71.23 0.52 11.93 16 4 O -0.53 -15.40 15.73 21.97 0.35 -15.05 16 5 C -0.08 -1.80 2.63 -11.54 -0.03 -1.83 16 6 H 0.12 2.50 8.14 -2.38 -0.02 2.48 16 7 C -0.10 -2.27 5.14 30.59 0.16 -2.11 16 8 C -0.10 -3.15 4.93 30.60 0.15 -3.00 16 9 C -0.08 -2.76 1.69 -11.54 -0.02 -2.78 16 10 H 0.10 3.09 7.16 -2.38 -0.02 3.07 16 11 C 0.46 19.41 6.87 87.66 0.60 20.02 16 12 O -0.63 -29.77 15.64 -3.09 -0.05 -29.82 16 13 N -0.45 -19.77 2.61 -645.41 -1.68 -21.45 16 14 C -0.33 -13.96 7.72 84.04 0.65 -13.31 16 15 H 0.12 4.74 5.76 -2.91 -0.02 4.72 16 16 C 0.00 -0.14 5.17 84.93 0.44 0.30 16 17 N -0.91 -42.58 8.92 21.66 0.19 -42.39 16 18 Si 0.99 35.25 29.57 68.60 2.03 37.28 16 19 H -0.25 -8.28 7.11 99.48 0.71 -7.58 16 20 H -0.28 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.29 -11.04 7.11 99.48 0.71 -10.34 16 22 C 0.22 9.57 5.09 84.58 0.43 10.00 16 23 C 0.27 12.96 14.03 89.46 1.26 14.22 16 24 N -0.52 -26.76 18.53 19.99 0.37 -26.39 16 25 C -0.09 -2.58 4.53 30.61 0.14 -2.45 16 26 C -0.09 -2.22 4.50 30.61 0.14 -2.08 16 27 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 28 H 0.06 0.94 8.13 -2.38 -0.02 0.92 16 29 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.89 8.11 -2.39 -0.02 1.87 16 31 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.08 2.73 6.11 -2.39 -0.01 2.72 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.27 12.44 8.31 -92.71 -0.77 11.67 16 35 H 0.15 6.38 5.79 -2.39 -0.01 6.37 16 36 H 0.09 3.81 7.57 -2.39 -0.02 3.79 16 37 H 0.06 1.84 8.01 -2.38 -0.02 1.82 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 1.77 8.10 -2.39 -0.02 1.75 16 40 H 0.07 1.78 8.10 -2.38 -0.02 1.76 16 Total: -1.00 -60.00 332.88 7.35 -52.65 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 1.06 Total: 22.93 kcal Atomic # 6 Polarization: 24.88 SS G_CDS: 5.62 Total: 30.51 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -1.12 Total: -90.23 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: -0.24 Total: -53.14 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Total: -60.00 7.35 -52.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435681667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.671 kcal (2) G-P(sol) polarization free energy of solvation -59.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds