Wall clock time and date at job start Fri Apr 10 2020 17:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46903 * 109.46794 * 182.05827 * 3 2 1 5 5 C 1.46846 * 111.00127 * 294.20660 * 4 3 2 6 6 C 1.53033 * 109.52447 * 174.16224 * 5 4 3 7 7 C 1.53115 * 109.27981 * 59.18263 * 6 5 4 8 8 C 1.50695 * 109.52459 * 182.44071 * 7 6 5 9 9 O 1.21291 * 120.00014 * 86.96257 * 8 7 6 10 10 N 1.34783 * 120.00187 * 266.95967 * 8 7 6 11 11 C 1.37090 * 120.00021 * 183.57265 * 10 8 7 12 12 H 1.07992 * 120.00293 * 17.36771 * 11 10 8 13 13 C 1.38952 * 119.99552 * 197.37493 * 11 10 8 14 14 N 1.31407 * 120.00391 * 19.07569 * 13 11 10 15 15 Si 1.86806 * 119.99824 * 199.08111 * 13 11 10 16 16 H 1.48501 * 109.46813 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47156 * 119.99662 * 15 13 11 18 18 H 1.48491 * 109.47127 * 239.99798 * 15 13 11 19 19 C 1.46500 * 119.99426 * 3.56928 * 10 8 7 20 20 C 1.50699 * 109.47261 * 84.73119 * 19 10 8 21 21 O 1.20829 * 119.99680 * 359.97438 * 20 19 10 22 22 O 1.34229 * 119.99989 * 179.97438 * 20 19 10 23 23 C 1.53122 * 109.15886 * 302.34511 * 7 6 5 24 24 C 1.46853 * 110.99964 * 169.99896 * 4 3 2 25 25 H 4.40884 * 5.52273 * 179.97438 * 4 1 2 26 26 H 1.08996 * 109.47150 * 62.05806 * 3 2 1 27 27 H 1.09004 * 109.47110 * 302.05728 * 3 2 1 28 28 H 1.09008 * 109.46372 * 294.18328 * 5 4 3 29 29 H 1.09002 * 109.46143 * 54.14461 * 5 4 3 30 30 H 1.08998 * 109.50410 * 299.23649 * 6 5 4 31 31 H 1.09002 * 109.50228 * 179.12245 * 6 5 4 32 32 H 1.09003 * 109.57815 * 62.28116 * 7 6 5 33 33 H 0.97001 * 120.00313 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.46701 * 204.72884 * 19 10 8 35 35 H 1.08998 * 109.47327 * 324.72720 * 19 10 8 36 36 H 0.96706 * 116.99708 * 179.97438 * 22 20 19 37 37 H 1.08995 * 109.50319 * 297.71314 * 23 7 6 38 38 H 1.09003 * 109.50208 * 177.59157 * 23 7 6 39 39 H 1.08994 * 109.46165 * 305.85847 * 24 4 3 40 40 H 1.09002 * 109.45825 * 65.82836 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 1.3850 0.0497 5 6 2.7800 2.1129 -1.1753 6 6 3.1749 3.5841 -1.0287 7 6 4.6817 3.6801 -0.7742 8 6 5.0670 5.1225 -0.5693 9 8 5.0014 5.6166 0.5364 10 7 5.4845 5.8636 -1.6149 11 6 5.9045 7.1534 -1.4166 12 1 6.1695 7.4886 -0.4248 13 6 5.9892 8.0294 -2.4918 14 7 5.3348 7.7724 -3.6020 15 14 7.0335 9.5727 -2.3592 16 1 7.6630 9.6303 -1.0155 17 1 8.0912 9.5456 -3.4012 18 1 6.1759 10.7690 -2.5553 19 6 5.4895 5.2905 -2.9632 20 6 4.1226 5.4431 -3.5790 21 8 3.2351 5.9755 -2.9553 22 8 3.8910 4.9877 -4.8202 23 6 5.0320 2.8739 0.4796 24 6 4.5833 1.4233 0.2893 25 1 -1.0503 -0.0004 -0.0002 26 1 3.0095 -0.4807 -0.9078 27 1 3.0095 -0.5446 0.8710 28 1 3.3094 1.6774 -2.0228 29 1 1.7053 2.0402 -1.3424 30 1 2.6354 4.0239 -0.1899 31 1 2.9256 4.1208 -1.9441 32 1 5.2231 3.2765 -1.6298 33 1 5.3942 8.3838 -4.3527 34 1 6.2247 5.8116 -3.5766 35 1 5.7470 4.2328 -2.9075 36 1 2.9985 5.1079 -5.1725 37 1 4.5217 3.3025 1.3422 38 1 6.1095 2.9032 0.6419 39 1 4.8183 0.8498 1.1859 40 1 5.1042 0.9912 -0.5651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736079134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:08 Heat of formation + Delta-G solvation = -51.296816 kcal Electronic energy + Delta-G solvation = -24792.598352 eV Core-core repulsion = 21188.647510 eV Total energy + Delta-G solvation = -3603.950842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.90265 -38.85410 -37.79737 -35.29062 -34.62692 -34.14155 -32.16674 -31.49797 -30.59972 -27.79984 -27.26569 -25.01523 -23.10090 -22.93065 -21.13242 -20.06361 -18.54368 -18.17183 -17.16216 -16.92517 -16.34873 -16.00210 -15.58785 -15.12975 -14.81788 -14.63304 -14.48495 -14.05895 -13.82383 -13.27580 -13.21230 -12.85456 -12.59719 -12.50879 -11.97716 -11.76338 -11.65906 -11.54554 -11.04313 -10.99200 -10.87169 -10.59116 -10.46729 -10.39863 -10.36287 -10.27622 -10.00646 -9.89219 -9.61631 -9.05387 -8.42149 -8.30937 -7.90480 -6.44338 -3.90245 2.65937 2.80283 3.12419 3.24127 3.31320 3.43831 3.64984 4.05868 4.06561 4.24228 4.35791 4.69199 4.97689 5.04434 5.13168 5.19925 5.32846 5.38428 5.48609 5.58276 5.63668 5.66133 5.80544 5.88692 5.97065 6.01207 6.13713 6.26572 6.36694 6.45938 6.58661 6.66906 6.77683 7.05810 7.12318 7.48327 7.54441 7.58009 7.99978 8.37786 9.02888 9.10121 9.31545 9.86340 10.64523 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.004670 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.370723 B = 5993.659533 C = 6680.981708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.161 3.839 4 N -0.535 5.535 5 C 0.060 3.940 6 C -0.106 4.106 7 C -0.105 4.105 8 C 0.469 3.531 9 O -0.572 6.572 10 N -0.434 5.434 11 C -0.301 4.301 12 H 0.107 0.893 13 C 0.028 3.972 14 N -0.886 5.886 15 Si 0.929 3.071 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.283 1.283 19 C 0.145 3.855 20 C 0.491 3.509 21 O -0.499 6.499 22 O -0.536 6.536 23 C -0.097 4.097 24 C 0.059 3.941 25 H 0.216 0.784 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.270 0.730 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.391 0.609 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.091 -14.572 -1.188 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.176 4.176 3 C 0.034 3.966 4 N -0.260 5.260 5 C -0.067 4.067 6 C -0.144 4.144 7 C -0.126 4.126 8 C 0.258 3.742 9 O -0.454 6.454 10 N -0.154 5.154 11 C -0.429 4.429 12 H 0.125 0.875 13 C -0.174 4.174 14 N -0.527 5.527 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.209 1.209 19 C 0.019 3.981 20 C 0.331 3.669 21 O -0.384 6.384 22 O -0.347 6.347 23 C -0.135 4.135 24 C -0.068 4.068 25 H 0.233 0.767 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.094 0.906 36 H 0.248 0.752 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.167 -13.858 -0.061 14.026 hybrid contribution -0.145 0.647 -1.288 1.448 sum -2.312 -13.211 -1.349 13.479 Atomic orbital electron populations 1.24866 0.95882 0.99852 1.01581 1.22882 0.94253 1.00528 0.99929 1.19001 0.85183 0.90691 1.01702 1.61905 1.14579 1.11894 1.37653 1.22140 1.00631 0.94529 0.89405 1.21595 0.94318 0.94628 1.03859 1.21312 0.97396 0.94915 0.99020 1.19978 0.80961 0.87804 0.85503 1.90520 1.56437 1.73752 1.24715 1.43469 1.56064 1.12596 1.03274 1.19768 1.40139 0.86339 0.96626 0.87548 1.25225 0.97194 0.99277 0.95690 1.69733 1.38717 1.38860 1.05396 0.85807 0.79355 0.80693 0.78524 1.19184 1.20605 1.20897 1.20673 0.92757 0.97916 0.86773 1.23791 0.91512 0.73398 0.78179 1.90606 1.46387 1.38733 1.62706 1.84528 1.38685 1.77353 1.34107 1.21413 1.00939 0.92631 0.98515 1.22138 0.86139 0.98154 1.00359 0.76714 0.92631 0.88569 0.94865 0.90757 0.90579 0.90303 0.90812 0.91987 0.85503 0.90583 0.75244 0.89778 0.91268 0.90486 0.94748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.24 19.25 29.55 0.57 -1.67 16 2 C -0.18 -2.15 12.34 -37.12 -0.46 -2.60 16 3 C 0.16 1.78 5.46 -6.61 -0.04 1.74 16 4 N -0.54 -7.29 4.63 -238.17 -1.10 -8.40 16 5 C 0.06 0.88 5.30 -3.84 -0.02 0.86 16 6 C -0.11 -1.92 5.36 -26.65 -0.14 -2.07 16 7 C -0.10 -1.94 2.02 -91.65 -0.19 -2.12 16 8 C 0.47 11.33 6.47 -10.98 -0.07 11.26 16 9 O -0.57 -15.88 15.85 5.55 0.09 -15.80 16 10 N -0.43 -10.85 2.17 -116.10 -0.25 -11.10 16 11 C -0.30 -8.27 9.33 -14.94 -0.14 -8.41 16 12 H 0.11 3.07 7.40 -52.49 -0.39 2.68 16 13 C 0.03 0.73 4.94 -17.47 -0.09 0.64 16 14 N -0.89 -23.15 9.09 55.50 0.50 -22.65 16 15 Si 0.93 20.53 29.59 -169.99 -5.03 15.50 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 19 C 0.15 3.12 4.99 -5.19 -0.03 3.09 16 20 C 0.49 10.65 5.28 36.01 0.19 10.84 16 21 O -0.50 -12.64 15.02 -18.75 -0.28 -12.92 16 22 O -0.54 -9.44 13.42 -39.25 -0.53 -9.97 16 23 C -0.10 -1.56 5.05 -26.65 -0.13 -1.69 16 24 C 0.06 0.75 5.46 -3.83 -0.02 0.73 16 25 H 0.22 1.62 7.80 -54.08 -0.42 1.20 16 26 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 27 H 0.10 0.89 7.99 -51.93 -0.41 0.48 16 28 H 0.03 0.45 8.14 -51.92 -0.42 0.02 16 29 H 0.07 1.08 7.11 -51.93 -0.37 0.72 16 30 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.08 1.55 4.78 -51.93 -0.25 1.31 16 32 H 0.07 1.22 5.87 -51.93 -0.30 0.92 16 33 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.13 2.84 6.39 -51.93 -0.33 2.51 16 35 H 0.08 1.33 5.92 -51.93 -0.31 1.03 16 36 H 0.39 5.31 9.10 45.56 0.41 5.72 16 37 H 0.08 1.55 7.78 -51.93 -0.40 1.15 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 329.50 15.07 4.97 4.97 Total: -1.00 -33.77 329.50 -6.64 -40.40 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -4.44 Total: 9.36 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -0.56 Total: 10.60 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -0.85 Total: -42.15 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.72 Total: -38.69 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.77 -6.64 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736079134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.893 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds