Wall clock time and date at job start Fri Apr 10 2020 17:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46903 * 109.46794 * 182.05827 * 3 2 1 5 5 C 1.46846 * 111.00127 * 294.20660 * 4 3 2 6 6 C 1.53033 * 109.52447 * 174.16224 * 5 4 3 7 7 C 1.53115 * 109.27981 * 59.18263 * 6 5 4 8 8 C 1.50695 * 109.52459 * 182.44071 * 7 6 5 9 9 O 1.21291 * 120.00014 * 86.96257 * 8 7 6 10 10 N 1.34783 * 120.00187 * 266.95967 * 8 7 6 11 11 C 1.37090 * 120.00021 * 183.57265 * 10 8 7 12 12 H 1.07992 * 120.00293 * 17.36771 * 11 10 8 13 13 C 1.38952 * 119.99552 * 197.37493 * 11 10 8 14 14 N 1.31407 * 120.00391 * 19.07569 * 13 11 10 15 15 Si 1.86806 * 119.99824 * 199.08111 * 13 11 10 16 16 H 1.48501 * 109.46813 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47156 * 119.99662 * 15 13 11 18 18 H 1.48491 * 109.47127 * 239.99798 * 15 13 11 19 19 C 1.46500 * 119.99426 * 3.56928 * 10 8 7 20 20 C 1.50699 * 109.47261 * 84.73119 * 19 10 8 21 21 O 1.20829 * 119.99680 * 359.97438 * 20 19 10 22 22 O 1.34229 * 119.99989 * 179.97438 * 20 19 10 23 23 C 1.53122 * 109.15886 * 302.34511 * 7 6 5 24 24 C 1.46853 * 110.99964 * 169.99896 * 4 3 2 25 25 H 4.40884 * 5.52273 * 179.97438 * 4 1 2 26 26 H 1.08996 * 109.47150 * 62.05806 * 3 2 1 27 27 H 1.09004 * 109.47110 * 302.05728 * 3 2 1 28 28 H 1.09008 * 109.46372 * 294.18328 * 5 4 3 29 29 H 1.09002 * 109.46143 * 54.14461 * 5 4 3 30 30 H 1.08998 * 109.50410 * 299.23649 * 6 5 4 31 31 H 1.09002 * 109.50228 * 179.12245 * 6 5 4 32 32 H 1.09003 * 109.57815 * 62.28116 * 7 6 5 33 33 H 0.97001 * 120.00313 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.46701 * 204.72884 * 19 10 8 35 35 H 1.08998 * 109.47327 * 324.72720 * 19 10 8 36 36 H 0.96706 * 116.99708 * 179.97438 * 22 20 19 37 37 H 1.08995 * 109.50319 * 297.71314 * 23 7 6 38 38 H 1.09003 * 109.50208 * 177.59157 * 23 7 6 39 39 H 1.08994 * 109.46165 * 305.85847 * 24 4 3 40 40 H 1.09002 * 109.45825 * 65.82836 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 1.3850 0.0497 5 6 2.7800 2.1129 -1.1753 6 6 3.1749 3.5841 -1.0287 7 6 4.6817 3.6801 -0.7742 8 6 5.0670 5.1225 -0.5693 9 8 5.0014 5.6166 0.5364 10 7 5.4845 5.8636 -1.6149 11 6 5.9045 7.1534 -1.4166 12 1 6.1695 7.4886 -0.4248 13 6 5.9892 8.0294 -2.4918 14 7 5.3348 7.7724 -3.6020 15 14 7.0335 9.5727 -2.3592 16 1 7.6630 9.6303 -1.0155 17 1 8.0912 9.5456 -3.4012 18 1 6.1759 10.7690 -2.5553 19 6 5.4895 5.2905 -2.9632 20 6 4.1226 5.4431 -3.5790 21 8 3.2351 5.9755 -2.9553 22 8 3.8910 4.9877 -4.8202 23 6 5.0320 2.8739 0.4796 24 6 4.5833 1.4233 0.2893 25 1 -1.0503 -0.0004 -0.0002 26 1 3.0095 -0.4807 -0.9078 27 1 3.0095 -0.5446 0.8710 28 1 3.3094 1.6774 -2.0228 29 1 1.7053 2.0402 -1.3424 30 1 2.6354 4.0239 -0.1899 31 1 2.9256 4.1208 -1.9441 32 1 5.2231 3.2765 -1.6298 33 1 5.3942 8.3838 -4.3527 34 1 6.2247 5.8116 -3.5766 35 1 5.7470 4.2328 -2.9075 36 1 2.9985 5.1079 -5.1725 37 1 4.5217 3.3025 1.3422 38 1 6.1095 2.9032 0.6419 39 1 4.8183 0.8498 1.1859 40 1 5.1042 0.9912 -0.5651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736079134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:07 Heat of formation + Delta-G solvation = -75.612457 kcal Electronic energy + Delta-G solvation = -24793.652757 eV Core-core repulsion = 21188.647510 eV Total energy + Delta-G solvation = -3605.005247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.55356 -40.34644 -39.30980 -37.03096 -36.35748 -35.41815 -33.77806 -32.91805 -31.80680 -29.55525 -28.48048 -26.73315 -24.47315 -24.14716 -22.81280 -21.46843 -20.14824 -19.01197 -18.97443 -18.68508 -18.12714 -17.38925 -17.08341 -16.47498 -16.22622 -16.14223 -15.90820 -15.59444 -15.34177 -14.73092 -14.53641 -14.27347 -13.91592 -13.77702 -13.55104 -13.46853 -13.37579 -12.93995 -12.72288 -12.46642 -12.38977 -12.24261 -12.12202 -12.01508 -11.61619 -11.50826 -11.41844 -11.21577 -11.01375 -10.94690 -10.29950 -9.86189 -9.28503 -8.43388 -5.97059 1.34408 1.41641 1.55696 1.71367 1.79009 1.89209 1.96778 2.25441 2.55085 2.94394 3.10111 3.11325 3.55801 3.69326 3.82586 3.91829 4.09131 4.21986 4.29835 4.38870 4.49861 4.58518 4.60012 4.66853 4.76608 4.80006 4.86028 4.93236 4.98374 5.08973 5.14789 5.23609 5.41363 5.44316 5.98042 6.02183 6.05878 6.13260 6.40259 6.75766 7.11475 7.31431 7.48574 7.94863 8.62991 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.004670 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.370723 B = 5993.659533 C = 6680.981708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.211 4.211 3 C 0.162 3.838 4 N -0.556 5.556 5 C 0.073 3.927 6 C -0.098 4.098 7 C -0.094 4.094 8 C 0.455 3.545 9 O -0.624 6.624 10 N -0.445 5.445 11 C -0.340 4.340 12 H 0.076 0.924 13 C 0.000 4.000 14 N -0.895 5.895 15 Si 0.992 3.008 16 H -0.274 1.274 17 H -0.259 1.259 18 H -0.285 1.285 19 C 0.142 3.858 20 C 0.499 3.501 21 O -0.542 6.542 22 O -0.519 6.519 23 C -0.094 4.094 24 C 0.068 3.932 25 H 0.241 0.759 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.274 0.726 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.413 0.587 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.573 -16.784 -2.811 17.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.211 4.211 3 C 0.036 3.964 4 N -0.282 5.282 5 C -0.055 4.055 6 C -0.136 4.136 7 C -0.115 4.115 8 C 0.246 3.754 9 O -0.510 6.510 10 N -0.164 5.164 11 C -0.468 4.468 12 H 0.094 0.906 13 C -0.201 4.201 14 N -0.535 5.535 15 Si 0.816 3.184 16 H -0.198 1.198 17 H -0.183 1.183 18 H -0.212 1.212 19 C 0.016 3.984 20 C 0.341 3.659 21 O -0.431 6.431 22 O -0.331 6.331 23 C -0.132 4.132 24 C -0.059 4.059 25 H 0.257 0.743 26 H 0.093 0.907 27 H 0.133 0.867 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.272 0.728 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.652 -16.112 -1.751 16.290 hybrid contribution -0.395 1.360 -0.826 1.639 sum -2.047 -14.752 -2.577 15.114 Atomic orbital electron populations 1.25664 0.96904 0.98708 1.00782 1.23439 0.95275 1.01570 1.00819 1.19119 0.84599 0.89095 1.03542 1.61797 1.15368 1.13806 1.37205 1.21944 1.00745 0.91924 0.90843 1.21465 0.93606 0.97236 1.01338 1.21309 0.97718 0.91194 1.01301 1.21044 0.79742 0.90055 0.84609 1.90471 1.58448 1.75378 1.26681 1.43643 1.55769 1.12067 1.04921 1.19664 1.42657 0.88407 0.96035 0.90614 1.25941 0.97448 1.01662 0.95069 1.69814 1.38429 1.39630 1.05590 0.84904 0.78060 0.76832 0.78627 1.19828 1.18317 1.21169 1.20836 0.92599 1.00006 0.84930 1.23705 0.90982 0.72429 0.78769 1.90605 1.47671 1.40840 1.64025 1.84448 1.40387 1.76324 1.31963 1.21390 1.01142 0.94773 0.95917 1.22104 0.85742 0.95403 1.02670 0.74276 0.90674 0.86662 0.92640 0.90990 0.94363 0.91944 0.88073 0.91585 0.86361 0.86303 0.72804 0.93123 0.90537 0.88014 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.07 19.25 74.32 1.43 -2.64 16 2 C -0.21 -4.70 12.34 31.13 0.38 -4.32 16 3 C 0.16 3.07 5.46 84.50 0.46 3.53 16 4 N -0.56 -13.85 4.63 -907.45 -4.21 -18.06 16 5 C 0.07 2.00 5.30 86.32 0.46 2.46 16 6 C -0.10 -3.58 5.36 30.64 0.16 -3.42 16 7 C -0.09 -3.44 2.02 -11.46 -0.02 -3.46 16 8 C 0.45 22.77 6.47 87.65 0.57 23.34 16 9 O -0.62 -36.83 15.85 -3.06 -0.05 -36.88 16 10 N -0.45 -22.79 2.17 -639.61 -1.39 -24.17 16 11 C -0.34 -19.35 9.33 84.04 0.78 -18.57 16 12 H 0.08 4.66 7.40 -2.91 -0.02 4.64 16 13 C 0.00 -0.01 4.94 84.93 0.42 0.41 16 14 N -0.90 -46.53 9.09 21.66 0.20 -46.33 16 15 Si 0.99 42.39 29.59 68.60 2.03 44.42 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 17 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 18 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 19 C 0.14 5.97 4.99 85.63 0.43 6.40 16 20 C 0.50 21.22 5.28 71.24 0.38 21.59 16 21 O -0.54 -27.80 15.02 21.95 0.33 -27.47 16 22 O -0.52 -17.06 13.42 -51.40 -0.69 -17.75 16 23 C -0.09 -2.97 5.05 30.65 0.15 -2.81 16 24 C 0.07 1.50 5.46 86.32 0.47 1.97 16 25 H 0.24 3.07 7.80 -4.40 -0.03 3.03 16 26 H 0.08 1.15 8.12 -2.39 -0.02 1.13 16 27 H 0.12 1.72 7.99 -2.39 -0.02 1.70 16 28 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.07 2.00 7.11 -2.39 -0.02 1.98 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 2.48 4.78 -2.39 -0.01 2.47 16 32 H 0.10 3.10 5.87 -2.39 -0.01 3.08 16 33 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 34 H 0.12 5.20 6.39 -2.38 -0.02 5.19 16 35 H 0.12 3.87 5.92 -2.39 -0.01 3.85 16 36 H 0.41 10.17 9.10 -74.05 -0.67 9.49 16 37 H 0.05 1.93 7.78 -2.39 -0.02 1.91 16 38 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.10 1.79 8.01 -2.39 -0.02 1.77 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -77.49 329.50 2.70 -74.79 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.39 Total: 26.96 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: 6.08 Total: 24.48 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -5.39 Total: -88.56 kcal Atomic # 8 Polarization: -81.69 SS G_CDS: -0.41 Total: -82.10 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -77.49 2.70 -74.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736079134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.818 kcal (2) G-P(sol) polarization free energy of solvation -77.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds