Wall clock time and date at job start Fri Apr 10 2020 17:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.46777 * 2 1 4 4 C 1.46503 * 119.99817 * 270.00138 * 3 2 1 5 5 C 1.50702 * 109.46831 * 269.99773 * 4 3 2 6 6 H 1.08002 * 120.00006 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00199 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99560 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00249 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47157 * 89.99888 * 9 7 5 11 11 H 1.48493 * 109.47226 * 210.00484 * 9 7 5 12 12 H 1.48504 * 109.47031 * 330.00364 * 9 7 5 13 13 C 1.34777 * 120.00033 * 89.99571 * 3 2 1 14 14 O 1.21283 * 119.99827 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00098 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.47235 * 179.97438 * 15 13 3 17 17 C 1.34777 * 116.99944 * 179.97438 * 16 15 13 18 18 O 1.21552 * 120.00247 * 0.02562 * 17 16 15 19 19 C 1.47116 * 120.00065 * 179.97438 * 17 16 15 20 20 C 1.46745 * 127.01832 * 0.02614 * 19 17 16 21 21 C 1.34436 * 106.37004 * 179.97438 * 20 19 17 22 22 N 1.36430 * 109.08611 * 0.02562 * 21 20 19 23 23 C 1.46500 * 124.81022 * 179.97438 * 22 21 20 24 24 C 1.34631 * 110.37828 * 359.72738 * 22 21 20 25 25 H 1.09007 * 109.47141 * 60.00397 * 1 2 3 26 26 H 1.09001 * 109.46600 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47470 * 300.00177 * 1 2 3 28 28 H 1.08999 * 109.47574 * 240.00352 * 2 1 3 29 29 H 1.08994 * 109.46998 * 119.99260 * 2 1 3 30 30 H 1.09000 * 109.47250 * 29.99422 * 4 3 2 31 31 H 1.08998 * 109.47435 * 150.00183 * 4 3 2 32 32 H 0.97001 * 120.00142 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47046 * 59.99377 * 15 13 3 34 34 H 1.09002 * 109.46706 * 299.99689 * 15 13 3 35 35 H 1.07996 * 126.81547 * 0.02562 * 20 19 17 36 36 H 1.08000 * 125.45758 * 180.02562 * 21 20 19 37 37 H 1.09006 * 109.46848 * 90.02696 * 23 22 21 38 38 H 1.08993 * 109.47391 * 210.02590 * 23 22 21 39 39 H 1.08999 * 109.47325 * 330.03128 * 23 22 21 40 40 H 1.08001 * 125.89008 * 180.28499 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8352 -1.7038 6 1 4.3426 1.2304 -1.0961 7 6 4.1490 2.3898 -2.8780 8 7 3.3490 3.1257 -3.6181 9 14 5.9135 2.0969 -3.4168 10 1 5.9776 0.8755 -4.2590 11 1 6.3920 3.2641 -4.2002 12 1 6.7735 1.9183 -2.2194 13 6 2.2428 2.0167 1.1672 14 8 2.6474 3.1600 1.1672 15 6 1.9921 1.3061 2.4723 16 8 2.3070 2.1956 3.5760 17 6 2.1352 1.7100 4.8214 18 8 1.7337 0.5738 4.9807 19 6 2.4348 2.5545 5.9881 20 6 2.9244 3.9379 5.9751 21 6 3.0547 4.3058 7.2615 22 7 2.6869 3.2646 8.0628 23 6 2.6976 3.2922 9.5275 24 6 2.3077 2.2101 7.3166 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.5816 1.6877 -2.0284 31 1 2.0954 3.1411 -1.1385 32 1 3.6748 3.5156 -4.4444 33 1 2.6227 0.4189 2.5299 34 1 0.9443 1.0116 2.5302 35 1 3.1369 4.5409 5.1048 36 1 3.3959 5.2710 7.6056 37 1 1.7311 3.6413 9.8913 38 1 2.8883 2.2890 9.9084 39 1 3.4810 3.9670 9.8725 40 1 1.9651 1.2579 7.6941 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764119475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:40 Heat of formation + Delta-G solvation = -64.852164 kcal Electronic energy + Delta-G solvation = -23009.845866 eV Core-core repulsion = 19405.307220 eV Total energy + Delta-G solvation = -3604.538646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39487 -39.95606 -38.72329 -36.05971 -35.19631 -33.11391 -32.78622 -30.11853 -29.57367 -29.00198 -27.23597 -26.26436 -23.37335 -22.98767 -22.27194 -20.57542 -19.77119 -18.58156 -18.03706 -16.86909 -16.56299 -16.23365 -16.20820 -15.61793 -15.46349 -15.03949 -14.36647 -14.28669 -14.00099 -13.40074 -13.32069 -13.23466 -12.95245 -12.79813 -12.57208 -12.48438 -12.11025 -12.01431 -11.94743 -11.54398 -11.17930 -10.88855 -10.79216 -10.53659 -10.41824 -10.37900 -10.10067 -9.60962 -8.89429 -8.86256 -8.57548 -8.40745 -7.67917 -6.01635 -4.06146 1.42408 2.23406 2.37183 2.91413 3.30497 3.33073 3.37783 3.40096 3.45940 4.03360 4.34419 4.47925 4.63426 4.68044 4.75270 4.93895 4.98786 5.08767 5.25830 5.33002 5.33711 5.35503 5.47539 5.66010 5.73688 5.80569 5.95145 6.07159 6.25232 6.50891 6.51168 6.58749 6.78583 6.93245 7.06791 7.45745 7.54342 7.94320 8.01688 8.25540 8.37845 8.91255 9.06898 9.58716 11.06545 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.003191 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.368867 B = 8773.429739 C = 9626.414928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.594 5.594 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.051 3.949 16 O -0.323 6.323 17 C 0.541 3.459 18 O -0.530 6.530 19 C -0.222 4.222 20 C -0.136 4.136 21 C -0.029 4.029 22 N -0.444 5.444 23 C 0.069 3.931 24 C 0.082 3.918 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.157 0.843 36 H 0.170 0.830 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.276 -2.898 23.834 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.026 4.026 16 O -0.238 6.238 17 C 0.388 3.612 18 O -0.421 6.421 19 C -0.231 4.231 20 C -0.159 4.159 21 C -0.154 4.154 22 N -0.120 5.120 23 C -0.073 4.073 24 C -0.054 4.054 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.175 0.825 36 H 0.187 0.813 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.152 -2.433 24.010 24.488 hybrid contribution 0.883 -0.392 -0.439 1.061 sum -3.269 -2.825 23.571 23.964 Atomic orbital electron populations 1.22234 0.96596 1.01631 1.02411 1.21500 0.93723 0.84004 1.02985 1.48201 1.64006 1.13389 1.07137 1.19318 0.96405 0.93729 0.77638 1.21444 0.96905 1.31932 1.06270 0.92389 1.24931 0.97890 0.94890 0.96390 1.69931 1.35722 1.33445 1.14299 0.86486 0.84673 0.77627 0.78586 1.20671 1.21098 1.19847 1.19739 0.79601 0.87138 0.84316 1.90708 1.44396 1.17545 1.86766 1.22910 1.02560 0.92675 0.84459 1.86634 1.78783 1.44357 1.13988 1.20173 0.73624 0.84722 0.82727 1.90808 1.44740 1.19603 1.86995 1.19595 1.17182 0.96377 0.89944 1.22284 1.02893 0.94160 0.96596 1.21806 1.09673 0.93847 0.90121 1.43613 1.49899 1.11531 1.06937 1.22146 1.03838 1.04662 0.76609 1.21987 1.01046 0.92837 0.89569 0.91846 0.91955 0.93077 0.89501 0.91710 0.94680 0.93709 0.92719 0.88830 0.88900 0.82530 0.81293 0.90489 0.89512 0.89385 0.80410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 10.24 37.16 0.38 -1.99 16 2 C 0.10 1.68 5.93 -4.04 -0.02 1.65 16 3 N -0.59 -12.90 2.46 -175.05 -0.43 -13.33 16 4 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 5 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 9 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.51 11.27 7.75 -10.99 -0.09 11.18 16 14 O -0.52 -13.86 16.08 -14.10 -0.23 -14.09 16 15 C 0.05 0.91 4.51 36.01 0.16 1.08 16 16 O -0.32 -6.06 9.66 -47.38 -0.46 -6.52 16 17 C 0.54 9.05 7.95 34.33 0.27 9.32 16 18 O -0.53 -9.31 16.71 -19.31 -0.32 -9.63 16 19 C -0.22 -3.10 6.33 -103.01 -0.65 -3.76 16 20 C -0.14 -1.71 11.00 -37.49 -0.41 -2.13 16 21 C -0.03 -0.27 11.32 -16.85 -0.19 -0.46 16 22 N -0.44 -3.65 3.08 -124.24 -0.38 -4.03 16 23 C 0.07 0.24 11.03 59.85 0.66 0.90 16 24 C 0.08 0.86 11.18 -16.47 -0.18 0.67 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.69 7.22 -51.93 -0.38 0.31 16 28 H 0.09 1.45 8.07 -51.93 -0.42 1.04 16 29 H 0.06 0.91 6.44 -51.93 -0.33 0.58 16 30 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.09 1.51 7.40 -51.93 -0.38 1.13 16 34 H 0.09 1.44 7.18 -51.93 -0.37 1.07 16 35 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.09 0.19 8.13 -51.93 -0.42 -0.23 16 39 H 0.09 0.18 8.13 -51.93 -0.42 -0.25 16 40 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -37.00 352.17 -6.93 -43.94 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.62 Total: -1.92 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -0.52 Total: 9.23 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: -0.08 Total: -43.42 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.01 Total: -30.23 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.00 -6.93 -43.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764119475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.915 kcal (2) G-P(sol) polarization free energy of solvation -37.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds