Wall clock time and date at job start Fri Apr 10 2020 17:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 116.99734 * 2 1 4 4 C 1.38755 * 120.05554 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94178 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05926 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.10843 * 359.75469 * 6 5 4 8 8 C 1.38163 * 120.05687 * 0.50009 * 7 6 5 9 9 C 1.50694 * 120.03249 * 179.77216 * 8 7 6 10 10 H 1.09000 * 109.47628 * 144.72567 * 9 8 7 11 11 C 1.52997 * 109.47314 * 264.72693 * 9 8 7 12 12 O 1.42905 * 109.47264 * 54.99637 * 11 9 8 13 13 N 1.46500 * 109.46786 * 24.72665 * 9 8 7 14 14 C 1.34778 * 120.00465 * 155.00218 * 13 9 8 15 15 O 1.21593 * 119.99254 * 359.97438 * 14 13 9 16 16 N 1.34774 * 120.00576 * 179.97438 * 14 13 9 17 17 C 1.46504 * 120.00133 * 179.97438 * 16 14 13 18 18 C 1.50693 * 109.47043 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00224 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99947 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99647 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99877 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47362 * 89.99951 * 22 20 18 24 24 H 1.48502 * 109.47238 * 209.99708 * 22 20 18 25 25 H 1.48499 * 109.47330 * 329.99926 * 22 20 18 26 26 H 1.09002 * 109.47524 * 60.00088 * 1 2 3 27 27 H 1.09004 * 109.47031 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47297 * 299.99732 * 1 2 3 29 29 H 1.07996 * 120.03037 * 359.95436 * 4 3 2 30 30 H 1.08005 * 119.97477 * 179.97438 * 5 4 3 31 31 H 1.07993 * 119.94560 * 180.02562 * 6 5 4 32 32 H 1.07997 * 119.97341 * 180.25109 * 7 6 5 33 33 H 1.09001 * 109.47289 * 294.99470 * 11 9 8 34 34 H 1.09004 * 109.47261 * 174.99726 * 11 9 8 35 35 H 0.96691 * 114.00079 * 179.97438 * 12 11 9 36 36 H 0.97000 * 120.00260 * 334.99723 * 13 9 8 37 37 H 0.97001 * 119.99417 * 0.02562 * 16 14 13 38 38 H 1.09007 * 109.46620 * 300.00349 * 17 16 14 39 39 H 1.08999 * 109.46712 * 60.00056 * 17 16 14 40 40 H 0.97005 * 119.99515 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6759 0.0016 7 6 4.0559 2.5172 0.0067 8 6 3.4311 1.2849 0.0009 9 6 4.2537 0.0223 0.0013 10 1 3.7465 -0.7417 0.5906 11 6 4.4273 -0.4738 -1.4356 12 8 4.9861 0.5701 -2.2357 13 7 5.5688 0.2965 0.5855 14 6 6.2758 -0.7011 1.1524 15 8 5.8217 -1.8288 1.1793 16 7 7.4860 -0.4490 1.6894 17 6 8.2541 -1.5334 2.3061 18 6 9.5602 -0.9909 2.8264 19 1 9.7949 0.0568 2.7091 20 6 10.4561 -1.8323 3.4514 21 7 10.1705 -3.1081 3.5938 22 14 12.0754 -1.1599 4.0957 23 1 11.9005 -0.7089 5.4998 24 1 13.1094 -2.2245 4.0431 25 1 12.5036 -0.0119 3.2568 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.2127 2.3204 0.0002 30 1 1.3338 4.5115 0.0011 31 1 3.7920 4.6381 0.0024 32 1 5.1343 2.5753 0.0112 33 1 3.4570 -0.7620 -1.8402 34 1 5.0949 -1.3354 -1.4444 35 1 5.1244 0.3253 -3.1609 36 1 5.9310 1.1961 0.5643 37 1 7.8480 0.4507 1.6682 38 1 7.6833 -1.9592 3.1313 39 1 8.4514 -2.3066 1.5636 40 1 10.8007 -3.6999 4.0338 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:54 Heat of formation + Delta-G solvation = -86.978949 kcal Electronic energy + Delta-G solvation = -23491.139041 eV Core-core repulsion = 19885.640907 eV Total energy + Delta-G solvation = -3605.498135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.60068 -39.17444 -37.63975 -36.74088 -34.56385 -33.91759 -32.32317 -31.14819 -30.31330 -28.38093 -27.41172 -26.74611 -23.67024 -22.73345 -22.18428 -20.83346 -19.86499 -18.61076 -17.81110 -17.23182 -16.54377 -16.20224 -15.93767 -15.70108 -15.22152 -14.86461 -14.67557 -14.56431 -14.16947 -13.75959 -13.60841 -13.42888 -13.07548 -12.81688 -12.40734 -12.22271 -11.92014 -11.90277 -11.59540 -11.36066 -11.29106 -10.92225 -10.88211 -10.82328 -10.25294 -9.92648 -9.32846 -9.31455 -8.99634 -8.71859 -8.63550 -8.25457 -7.68939 -6.10693 -4.16749 1.19794 1.31799 3.10463 3.28204 3.32651 3.35523 3.42230 3.65392 4.01025 4.36827 4.40860 4.53891 4.66754 4.82110 4.91441 4.92688 5.10368 5.16414 5.25376 5.26711 5.31711 5.38429 5.51066 5.56733 5.69260 5.86083 5.96467 6.17163 6.30095 6.40838 6.62795 6.97348 7.19225 7.23249 7.58696 7.61880 7.63577 7.69387 7.97528 8.10962 8.82488 9.01616 9.39932 9.54504 10.99629 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023799 B = 0.003222 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.261438 B = 8688.744592 C = 9037.463469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.132 3.868 4 C -0.208 4.208 5 C -0.085 4.085 6 C -0.155 4.155 7 C -0.060 4.060 8 C -0.105 4.105 9 C 0.219 3.781 10 H 0.111 0.889 11 C 0.070 3.930 12 O -0.566 6.566 13 N -0.746 5.746 14 C 0.694 3.306 15 O -0.603 6.603 16 N -0.729 5.729 17 C 0.267 3.733 18 C -0.540 4.540 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 H 0.054 0.946 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.373 0.627 36 H 0.391 0.609 37 H 0.386 0.614 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.945 12.758 -10.646 25.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.087 3.913 4 C -0.227 4.227 5 C -0.104 4.104 6 C -0.173 4.173 7 C -0.078 4.078 8 C -0.107 4.107 9 C 0.113 3.887 10 H 0.129 0.871 11 C -0.009 4.009 12 O -0.371 6.371 13 N -0.405 5.405 14 C 0.394 3.606 15 O -0.482 6.482 16 N -0.381 5.381 17 C 0.146 3.854 18 C -0.579 4.579 19 H 0.080 0.920 20 C -0.141 4.141 21 N -0.524 5.524 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.219 0.781 36 H 0.227 0.773 37 H 0.218 0.782 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.187 11.603 -9.931 24.523 hybrid contribution 0.941 0.949 -0.187 1.350 sum -18.246 12.552 -10.118 24.349 Atomic orbital electron populations 1.23054 0.78470 1.04027 1.01154 1.86111 1.21269 1.26673 1.88564 1.18733 0.91363 0.84425 0.96811 1.21142 0.99791 0.92281 1.09497 1.20900 0.94696 0.96820 0.97946 1.21028 0.93864 0.98341 1.04050 1.20717 0.99928 0.90872 0.96278 1.19175 0.90320 0.95609 1.05569 1.19379 0.82679 0.94371 0.92276 0.87130 1.22614 0.97290 0.90043 0.90954 1.86468 1.86039 1.40356 1.24229 1.45236 1.19562 1.11393 1.64261 1.16139 0.81512 0.84326 0.78596 1.90862 1.71066 1.21024 1.65267 1.45696 1.17139 1.13950 1.61290 1.18969 0.89127 0.84570 0.92714 1.21241 1.02061 0.95615 1.38976 0.91955 1.24944 0.98672 0.94731 0.95715 1.69984 1.36441 1.03650 1.42277 0.86415 0.82680 0.78577 0.79210 1.20512 1.21059 1.19778 0.92779 0.88156 0.92688 0.85552 0.85990 0.85850 0.85408 0.93099 0.92376 0.78064 0.77294 0.78200 0.95761 0.95767 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.70 9.63 -19.43 -0.19 -3.89 16 3 C 0.13 1.63 6.66 -39.21 -0.26 1.36 16 4 C -0.21 -2.10 9.04 -39.43 -0.36 -2.46 16 5 C -0.09 -0.81 10.04 -39.60 -0.40 -1.21 16 6 C -0.15 -1.57 10.04 -39.56 -0.40 -1.97 16 7 C -0.06 -0.71 8.99 -39.61 -0.36 -1.07 16 8 C -0.11 -1.41 4.66 -104.47 -0.49 -1.90 16 9 C 0.22 3.38 2.31 -69.09 -0.16 3.22 16 10 H 0.11 1.94 7.13 -51.93 -0.37 1.57 16 11 C 0.07 0.98 6.84 37.16 0.25 1.24 16 12 O -0.57 -7.11 12.88 -35.23 -0.45 -7.56 16 13 N -0.75 -12.46 4.95 -59.82 -0.30 -12.76 16 14 C 0.69 15.07 8.53 -86.92 -0.74 14.33 16 15 O -0.60 -15.45 16.01 5.28 0.08 -15.37 16 16 N -0.73 -16.29 5.55 -66.41 -0.37 -16.66 16 17 C 0.27 7.35 5.43 -5.19 -0.03 7.32 16 18 C -0.54 -15.02 9.28 -34.44 -0.32 -15.34 16 19 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 22 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 30 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.13 1.43 6.06 -52.49 -0.32 1.11 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.37 3.13 9.12 45.56 0.42 3.54 16 36 H 0.39 5.59 6.21 -40.82 -0.25 5.33 16 37 H 0.39 7.45 8.34 -40.82 -0.34 7.11 16 38 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -35.25 341.46 -7.20 -42.45 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -4.49 Total: 11.86 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -2.36 Total: 6.41 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.07 Total: -55.23 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.56 Total: -26.82 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.25 -7.20 -42.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.527 kcal (2) G-P(sol) polarization free energy of solvation -35.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds