Wall clock time and date at job start Fri Apr 10 2020 17:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 116.99734 * 2 1 4 4 C 1.38755 * 120.05554 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94178 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05926 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.10843 * 359.75469 * 6 5 4 8 8 C 1.38163 * 120.05687 * 0.50009 * 7 6 5 9 9 C 1.50694 * 120.03249 * 179.77216 * 8 7 6 10 10 H 1.09000 * 109.47628 * 144.72567 * 9 8 7 11 11 C 1.52997 * 109.47314 * 264.72693 * 9 8 7 12 12 O 1.42905 * 109.47264 * 54.99637 * 11 9 8 13 13 N 1.46500 * 109.46786 * 24.72665 * 9 8 7 14 14 C 1.34778 * 120.00465 * 155.00218 * 13 9 8 15 15 O 1.21593 * 119.99254 * 359.97438 * 14 13 9 16 16 N 1.34774 * 120.00576 * 179.97438 * 14 13 9 17 17 C 1.46504 * 120.00133 * 179.97438 * 16 14 13 18 18 C 1.50693 * 109.47043 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00224 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99947 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99647 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99877 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47362 * 89.99951 * 22 20 18 24 24 H 1.48502 * 109.47238 * 209.99708 * 22 20 18 25 25 H 1.48499 * 109.47330 * 329.99926 * 22 20 18 26 26 H 1.09002 * 109.47524 * 60.00088 * 1 2 3 27 27 H 1.09004 * 109.47031 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47297 * 299.99732 * 1 2 3 29 29 H 1.07996 * 120.03037 * 359.95436 * 4 3 2 30 30 H 1.08005 * 119.97477 * 179.97438 * 5 4 3 31 31 H 1.07993 * 119.94560 * 180.02562 * 6 5 4 32 32 H 1.07997 * 119.97341 * 180.25109 * 7 6 5 33 33 H 1.09001 * 109.47289 * 294.99470 * 11 9 8 34 34 H 1.09004 * 109.47261 * 174.99726 * 11 9 8 35 35 H 0.96691 * 114.00079 * 179.97438 * 12 11 9 36 36 H 0.97000 * 120.00260 * 334.99723 * 13 9 8 37 37 H 0.97001 * 119.99417 * 0.02562 * 16 14 13 38 38 H 1.09007 * 109.46620 * 300.00349 * 17 16 14 39 39 H 1.08999 * 109.46712 * 60.00056 * 17 16 14 40 40 H 0.97005 * 119.99515 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6759 0.0016 7 6 4.0559 2.5172 0.0067 8 6 3.4311 1.2849 0.0009 9 6 4.2537 0.0223 0.0013 10 1 3.7465 -0.7417 0.5906 11 6 4.4273 -0.4738 -1.4356 12 8 4.9861 0.5701 -2.2357 13 7 5.5688 0.2965 0.5855 14 6 6.2758 -0.7011 1.1524 15 8 5.8217 -1.8288 1.1793 16 7 7.4860 -0.4490 1.6894 17 6 8.2541 -1.5334 2.3061 18 6 9.5602 -0.9909 2.8264 19 1 9.7949 0.0568 2.7091 20 6 10.4561 -1.8323 3.4514 21 7 10.1705 -3.1081 3.5938 22 14 12.0754 -1.1599 4.0957 23 1 11.9005 -0.7089 5.4998 24 1 13.1094 -2.2245 4.0431 25 1 12.5036 -0.0119 3.2568 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.2127 2.3204 0.0002 30 1 1.3338 4.5115 0.0011 31 1 3.7920 4.6381 0.0024 32 1 5.1343 2.5753 0.0112 33 1 3.4570 -0.7620 -1.8402 34 1 5.0949 -1.3354 -1.4444 35 1 5.1244 0.3253 -3.1609 36 1 5.9310 1.1961 0.5643 37 1 7.8480 0.4507 1.6682 38 1 7.6833 -1.9592 3.1313 39 1 8.4514 -2.3066 1.5636 40 1 10.8007 -3.6999 4.0338 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:54 Heat of formation + Delta-G solvation = -115.775130 kcal Electronic energy + Delta-G solvation = -23492.387738 eV Core-core repulsion = 19885.640907 eV Total energy + Delta-G solvation = -3606.746831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60608 -40.68171 -38.63667 -37.76995 -36.20657 -35.62588 -34.36079 -32.37073 -31.10990 -29.69870 -28.59886 -28.07716 -25.07509 -24.27874 -23.20384 -22.13150 -21.37238 -20.07728 -18.92994 -18.42845 -18.02050 -17.58489 -16.93377 -16.72678 -16.70287 -16.38436 -16.15424 -15.65156 -15.46798 -14.99508 -14.94771 -14.59779 -14.38127 -14.06647 -13.97270 -13.79272 -13.25386 -12.99709 -12.85175 -12.72092 -12.66697 -12.22795 -12.21130 -11.98038 -11.73814 -11.46343 -11.31443 -10.93667 -10.79275 -10.32958 -9.81252 -9.61561 -9.08977 -8.27221 -6.43623 0.36478 0.50631 1.44061 1.47218 1.58144 1.83607 2.22350 2.39916 2.40666 2.82212 3.07608 3.34581 3.49566 3.58918 3.91163 4.08562 4.19571 4.28694 4.41540 4.42835 4.44153 4.48843 4.61073 4.68875 4.75352 4.79032 5.03491 5.08730 5.28098 5.30308 5.42767 5.49969 5.55634 5.64133 5.71277 5.85840 5.87495 6.23880 6.46636 6.67748 6.84939 7.24598 7.29144 7.70529 8.85265 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023799 B = 0.003222 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.261438 B = 8688.744592 C = 9037.463469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.118 3.882 4 C -0.208 4.208 5 C -0.081 4.081 6 C -0.157 4.157 7 C -0.072 4.072 8 C -0.129 4.129 9 C 0.218 3.782 10 H 0.081 0.919 11 C 0.082 3.918 12 O -0.569 6.569 13 N -0.723 5.723 14 C 0.693 3.307 15 O -0.646 6.646 16 N -0.722 5.722 17 C 0.286 3.714 18 C -0.555 4.555 19 H 0.083 0.917 20 C 0.004 3.996 21 N -0.931 5.931 22 Si 0.987 3.013 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.256 1.256 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.065 0.935 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.129 0.871 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.393 0.607 36 H 0.406 0.594 37 H 0.404 0.596 38 H -0.015 1.015 39 H -0.014 1.014 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.316 16.061 -11.096 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.073 3.927 4 C -0.226 4.226 5 C -0.098 4.098 6 C -0.175 4.175 7 C -0.090 4.090 8 C -0.131 4.131 9 C 0.112 3.888 10 H 0.099 0.901 11 C 0.002 3.998 12 O -0.377 6.377 13 N -0.381 5.381 14 C 0.393 3.607 15 O -0.529 6.529 16 N -0.376 5.376 17 C 0.163 3.837 18 C -0.593 4.593 19 H 0.101 0.899 20 C -0.196 4.196 21 N -0.569 5.569 22 Si 0.810 3.190 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.179 1.179 26 H 0.089 0.911 27 H 0.130 0.870 28 H 0.083 0.917 29 H 0.170 0.830 30 H 0.172 0.828 31 H 0.165 0.835 32 H 0.147 0.853 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.242 0.758 36 H 0.245 0.755 37 H 0.239 0.761 38 H 0.003 0.997 39 H 0.004 0.996 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.593 14.985 -10.432 26.782 hybrid contribution 0.898 -0.057 -0.110 0.907 sum -18.695 14.928 -10.542 26.143 Atomic orbital electron populations 1.23334 0.76396 1.05349 1.02434 1.86082 1.23563 1.27039 1.88633 1.18926 0.91225 0.85386 0.97194 1.21470 1.01063 0.91681 1.08433 1.21337 0.94727 0.97778 0.95997 1.21341 0.94398 0.98593 1.03150 1.20832 1.00259 0.91077 0.96844 1.19061 0.90852 0.94802 1.08363 1.19376 0.81658 0.95352 0.92414 0.90079 1.22345 0.97436 0.89274 0.90734 1.86417 1.85887 1.39695 1.25670 1.45021 1.19574 1.10850 1.62644 1.16273 0.81354 0.84557 0.78494 1.90829 1.71982 1.23277 1.66812 1.45298 1.17269 1.13680 1.61327 1.18419 0.89629 0.85128 0.90522 1.21599 1.01933 0.96702 1.39056 0.89869 1.26076 1.03071 0.94828 0.95627 1.70149 1.38198 1.05446 1.43137 0.85123 0.76909 0.78160 0.78794 1.19581 1.20888 1.17934 0.91081 0.87023 0.91667 0.83033 0.82780 0.83482 0.85309 0.91560 0.95114 0.75826 0.75537 0.76128 0.99659 0.99596 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.95 9.63 -92.45 -0.89 -8.84 16 3 C 0.12 2.80 6.66 22.51 0.15 2.94 16 4 C -0.21 -3.64 9.04 22.37 0.20 -3.43 16 5 C -0.08 -1.24 10.04 22.25 0.22 -1.01 16 6 C -0.16 -2.74 10.04 22.28 0.22 -2.51 16 7 C -0.07 -1.61 8.99 22.25 0.20 -1.41 16 8 C -0.13 -3.41 4.66 -19.77 -0.09 -3.51 16 9 C 0.22 6.93 2.31 44.24 0.10 7.04 16 10 H 0.08 3.05 7.13 -2.39 -0.02 3.04 16 11 C 0.08 2.34 6.84 71.98 0.49 2.83 16 12 O -0.57 -13.88 12.88 -148.98 -1.92 -15.80 16 13 N -0.72 -24.68 4.95 -461.42 -2.28 -26.96 16 14 C 0.69 31.35 8.53 179.05 1.53 32.88 16 15 O -0.65 -35.19 16.01 -4.01 -0.06 -35.25 16 16 N -0.72 -33.21 5.55 -482.29 -2.68 -35.89 16 17 C 0.29 16.48 5.43 85.63 0.46 16.94 16 18 C -0.56 -31.11 9.28 25.60 0.24 -30.87 16 19 H 0.08 4.22 7.60 -2.91 -0.02 4.19 16 20 C 0.00 0.20 5.46 84.66 0.46 0.66 16 21 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 22 Si 0.99 43.09 29.54 68.60 2.03 45.11 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 26 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 27 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 29 H 0.15 1.78 6.30 -2.91 -0.02 1.76 16 30 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.13 2.71 6.06 -2.91 -0.02 2.69 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 34 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.39 6.12 9.12 -74.06 -0.68 5.45 16 36 H 0.41 11.46 6.21 -92.71 -0.58 10.89 16 37 H 0.40 15.49 8.34 -92.71 -0.77 14.72 16 38 H -0.01 -0.94 8.14 -2.38 -0.02 -0.96 16 39 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 40 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -79.55 341.46 -1.15 -80.69 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.93 Total: 31.95 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: 5.31 Total: 21.91 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -4.68 Total: -119.78 kcal Atomic # 8 Polarization: -57.02 SS G_CDS: -2.87 Total: -59.89 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -79.55 -1.15 -80.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.080 kcal (2) G-P(sol) polarization free energy of solvation -79.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds