Wall clock time and date at job start Fri Apr 10 2020 17:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38725 * 120.05592 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05239 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94622 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47237 * 24.99833 * 7 6 5 9 9 O 1.42892 * 109.47670 * 145.00283 * 7 6 5 10 10 C 1.53003 * 109.47168 * 265.00338 * 7 6 5 11 11 N 1.46500 * 109.47410 * 179.97438 * 10 7 6 12 12 C 1.34773 * 119.99956 * 180.02562 * 11 10 7 13 13 O 1.21589 * 120.00533 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99747 * 179.97438 * 12 11 10 15 15 C 1.46502 * 120.00103 * 179.97438 * 14 12 11 16 16 C 1.50692 * 109.47492 * 180.02562 * 15 14 12 17 17 H 1.08006 * 119.99755 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00225 * 180.02562 * 16 15 14 19 19 N 1.31524 * 119.99954 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00037 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.46595 * 90.00443 * 20 18 16 22 22 H 1.48492 * 109.47055 * 210.00137 * 20 18 16 23 23 H 1.48493 * 109.47167 * 330.00563 * 20 18 16 24 24 C 1.38265 * 120.11333 * 0.02562 * 6 5 4 25 25 C 1.38143 * 120.05412 * 359.97438 * 24 6 5 26 26 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 27 27 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 28 28 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.03004 * 359.96283 * 4 3 2 30 30 H 1.08002 * 119.97573 * 179.72233 * 5 4 3 31 31 H 0.96697 * 114.00414 * 59.99380 * 9 7 6 32 32 H 1.09004 * 109.47076 * 300.00052 * 10 7 6 33 33 H 1.09005 * 109.47386 * 59.99548 * 10 7 6 34 34 H 0.97003 * 119.99961 * 359.97438 * 11 10 7 35 35 H 0.97003 * 120.00170 * 359.97438 * 14 12 11 36 36 H 1.09009 * 109.47033 * 300.00180 * 15 14 12 37 37 H 1.08999 * 109.47355 * 59.99721 * 15 14 12 38 38 H 0.97004 * 119.99579 * 179.97438 * 19 18 16 39 39 H 1.08001 * 119.97543 * 180.02562 * 24 6 5 40 40 H 1.08001 * 120.02739 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 4.9812 4.9189 -0.4365 9 8 3.2195 5.9431 -0.7768 10 6 4.1051 5.5315 1.4338 11 7 4.7707 6.8365 1.4327 12 6 4.9861 7.4840 2.5949 13 8 4.6276 6.9854 3.6443 14 7 5.5989 8.6844 2.5940 15 6 5.8325 9.3886 3.8573 16 6 6.5272 10.6972 3.5820 17 1 6.7708 10.9763 2.5674 18 6 6.8528 11.5378 4.6252 19 7 7.4596 12.6797 4.3849 20 14 6.4322 11.0547 6.3800 21 1 7.5630 10.2928 6.9681 22 1 6.1879 12.2783 7.1852 23 1 5.2115 10.2092 6.3816 24 6 1.9212 3.6047 -0.0021 25 6 1.2916 2.3751 -0.0016 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 4.0208 0.3798 0.0016 30 1 5.1346 2.5749 0.0050 31 1 2.3207 6.0811 -0.4479 32 1 3.1101 5.6310 1.8676 33 1 4.6900 4.8262 2.0243 34 1 5.0571 7.2343 0.5956 35 1 5.8853 9.0822 1.7569 36 1 4.8783 9.5804 4.3482 37 1 6.4575 8.7744 4.5055 38 1 7.6883 13.2712 5.1190 39 1 1.3343 4.5113 -0.0038 40 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787371510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:07 Heat of formation + Delta-G solvation = -122.216804 kcal Electronic energy + Delta-G solvation = -22429.875130 eV Core-core repulsion = 18822.848967 eV Total energy + Delta-G solvation = -3607.026163 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.33107 -40.84715 -39.42001 -37.45469 -36.18764 -35.25065 -34.35280 -32.17122 -32.05792 -30.18336 -28.76145 -27.75001 -24.81038 -23.82957 -23.37895 -22.15896 -21.79111 -19.92089 -19.26787 -18.40906 -18.22496 -17.48429 -17.17085 -16.66525 -16.65678 -16.27547 -15.99952 -15.81540 -15.42720 -15.14362 -14.78382 -14.64625 -14.45525 -14.36313 -14.17756 -13.80841 -13.44670 -13.31039 -13.01575 -12.80817 -12.67859 -12.39853 -11.91263 -11.83391 -11.72935 -11.64270 -11.39467 -11.14565 -10.90240 -10.32309 -9.98857 -9.64492 -9.13697 -8.38253 -6.45042 0.32787 0.36534 1.34987 1.36639 1.50244 1.85726 2.21934 2.30361 2.36356 2.70842 2.97191 3.40162 3.48858 3.74389 3.80038 3.89145 3.96583 4.14395 4.28568 4.37774 4.39547 4.50329 4.64106 4.68744 4.72857 4.80769 4.89028 5.05604 5.07069 5.21909 5.26769 5.33814 5.49764 5.57034 5.57454 5.76050 5.99106 6.29986 6.41259 6.57207 6.68632 7.15760 7.28063 7.67809 8.76416 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.035999 B = 0.002387 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.617635 B =11727.150199 C =12051.526767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.114 3.886 4 C -0.165 4.165 5 C -0.070 4.070 6 C -0.161 4.161 7 C 0.160 3.840 8 H 0.125 0.875 9 O -0.559 6.559 10 C 0.115 3.885 11 N -0.728 5.728 12 C 0.694 3.306 13 O -0.646 6.646 14 N -0.722 5.722 15 C 0.251 3.749 16 C -0.546 4.546 17 H 0.059 0.941 18 C 0.025 3.975 19 N -0.931 5.931 20 Si 0.939 3.061 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.261 1.261 24 C -0.074 4.074 25 C -0.211 4.211 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.139 0.861 30 H 0.149 0.851 31 H 0.387 0.613 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.412 0.588 35 H 0.405 0.595 36 H 0.010 0.990 37 H 0.009 0.991 38 H 0.272 0.728 39 H 0.144 0.856 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.905 -24.793 -13.106 31.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.069 3.931 4 C -0.184 4.184 5 C -0.088 4.088 6 C -0.163 4.163 7 C 0.101 3.899 8 H 0.142 0.858 9 O -0.366 6.366 10 C -0.010 4.010 11 N -0.385 5.385 12 C 0.394 3.606 13 O -0.529 6.529 14 N -0.376 5.376 15 C 0.127 3.873 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.175 4.175 19 N -0.570 5.570 20 Si 0.763 3.237 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.185 1.185 24 C -0.092 4.092 25 C -0.230 4.230 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.157 0.843 30 H 0.167 0.833 31 H 0.237 0.763 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.240 0.760 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.082 0.918 39 H 0.161 0.839 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.540 -25.234 -12.421 31.214 hybrid contribution -0.437 0.567 0.541 0.897 sum -13.977 -24.667 -11.880 30.740 Atomic orbital electron populations 1.23336 0.76504 1.05559 1.02225 1.86048 1.23441 1.26996 1.88596 1.19331 0.92861 0.84743 0.96182 1.20652 0.91742 0.99273 1.06711 1.21064 1.01025 0.90575 0.96173 1.20309 0.94565 0.95418 1.05965 1.20800 0.95943 0.84517 0.88660 0.85769 1.86610 1.30336 1.64009 1.55672 1.21931 0.97645 0.83385 0.98035 1.44794 1.64808 1.21744 1.07150 1.16222 0.78909 0.81100 0.84408 1.90835 1.60037 1.69498 1.32562 1.45112 1.62276 1.18968 1.11205 1.18943 0.94990 0.90497 0.82863 1.21284 1.39182 1.02473 0.95422 0.92274 1.25602 0.93991 0.94458 1.03438 1.69989 1.41449 1.11433 1.34127 0.85833 0.79904 0.78416 0.79590 1.18977 1.19773 1.18484 1.20961 0.93894 0.98112 0.96190 1.21435 1.01161 0.91871 1.08491 0.91903 0.91614 0.86412 0.84277 0.83308 0.76311 0.92088 0.91541 0.75141 0.75975 0.97197 0.97293 0.91848 0.83865 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.62 10.50 -92.40 -0.97 -6.59 16 3 C 0.11 2.00 6.69 22.50 0.15 2.15 16 4 C -0.17 -2.81 9.99 22.36 0.22 -2.58 16 5 C -0.07 -1.11 9.67 22.25 0.22 -0.89 16 6 C -0.16 -2.60 5.01 -19.85 -0.10 -2.70 16 7 C 0.16 2.59 3.30 29.85 0.10 2.69 16 8 H 0.12 1.78 8.05 -2.39 -0.02 1.76 16 9 O -0.56 -9.13 12.88 -148.98 -1.92 -11.04 16 10 C 0.11 2.58 5.32 86.38 0.46 3.04 16 11 N -0.73 -19.74 5.45 -478.52 -2.61 -22.35 16 12 C 0.69 27.10 8.57 179.06 1.53 28.63 16 13 O -0.65 -30.73 16.34 -4.00 -0.07 -30.79 16 14 N -0.72 -29.85 5.55 -482.29 -2.68 -32.53 16 15 C 0.25 12.64 4.50 85.63 0.38 13.03 16 16 C -0.55 -30.53 9.83 25.60 0.25 -30.28 16 17 H 0.06 3.47 7.84 -2.91 -0.02 3.44 16 18 C 0.03 1.45 5.47 84.65 0.46 1.91 16 19 N -0.93 -55.96 13.96 21.45 0.30 -55.66 16 20 Si 0.94 44.53 27.47 68.60 1.88 46.42 16 21 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.26 -12.30 6.54 99.48 0.65 -11.65 16 24 C -0.07 -1.09 9.32 22.25 0.21 -0.88 16 25 C -0.21 -3.16 9.04 22.37 0.20 -2.96 16 26 H 0.06 0.46 7.67 -2.39 -0.02 0.44 16 27 H 0.07 0.43 7.66 -2.38 -0.02 0.41 16 28 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 30 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.39 4.34 7.39 -74.06 -0.55 3.79 16 32 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 33 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.41 9.11 8.36 -92.71 -0.78 8.33 16 35 H 0.41 14.64 8.34 -92.71 -0.77 13.87 16 36 H 0.01 0.53 7.20 -2.38 -0.02 0.52 16 37 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 38 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.14 1.46 6.61 -2.91 -0.02 1.44 16 40 H 0.15 1.53 6.30 -2.91 -0.02 1.51 16 Total: -1.00 -75.23 341.23 -1.91 -77.14 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -1.06 Total: 22.98 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 5.20 Total: 12.43 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -4.99 Total: -110.54 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -2.95 Total: -48.43 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.42 kcal Total: -75.23 -1.91 -77.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.078 kcal (2) G-P(sol) polarization free energy of solvation -75.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds