Wall clock time and date at job start Fri Apr 10 2020 17:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35896 * 117.00441 * 2 1 4 4 C 1.38759 * 120.05286 * 0.24917 * 3 2 1 5 5 C 1.38118 * 119.94512 * 180.31943 * 4 3 2 6 6 C 1.38296 * 120.05619 * 359.68306 * 5 4 3 7 7 C 1.38243 * 120.10905 * 0.02562 * 6 5 4 8 8 C 1.38170 * 120.05451 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.02671 * 179.97438 * 8 7 6 10 10 N 1.46906 * 109.47109 * 260.00473 * 9 8 7 11 11 C 1.46896 * 111.00013 * 175.00097 * 10 9 8 12 12 C 1.50703 * 109.47119 * 190.00094 * 11 10 9 13 13 O 1.21290 * 119.99646 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99978 * 179.97438 * 12 11 10 15 15 C 1.37098 * 120.00210 * 179.97438 * 14 12 11 16 16 H 1.08007 * 119.99372 * 0.02562 * 15 14 12 17 17 C 1.38943 * 120.00577 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99694 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00329 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47237 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46954 * 120.00078 * 19 17 15 22 22 H 1.48498 * 109.47444 * 239.99924 * 19 17 15 23 23 O 1.46304 * 110.99696 * 298.95323 * 10 9 8 24 24 C 1.42898 * 113.99470 * 119.99967 * 23 10 9 25 25 H 1.08998 * 109.46894 * 299.99813 * 1 2 3 26 26 H 1.08999 * 109.46962 * 60.00335 * 1 2 3 27 27 H 1.08994 * 109.47203 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.03045 * 0.02990 * 4 3 2 29 29 H 1.08001 * 119.97673 * 179.70488 * 5 4 3 30 30 H 1.08000 * 119.94496 * 180.02562 * 6 5 4 31 31 H 1.07995 * 119.97355 * 180.02562 * 7 6 5 32 32 H 1.08992 * 109.46894 * 140.00209 * 9 8 7 33 33 H 1.09004 * 109.47113 * 20.00359 * 9 8 7 34 34 H 1.09001 * 109.47061 * 309.99578 * 11 10 9 35 35 H 1.08997 * 109.47526 * 69.99455 * 11 10 9 36 36 H 0.96999 * 120.00092 * 0.02562 * 14 12 11 37 37 H 0.96999 * 119.99830 * 180.02562 * 18 17 15 38 38 H 1.09005 * 109.46867 * 179.97438 * 24 23 10 39 39 H 1.08994 * 109.47928 * 299.99364 * 24 23 10 40 40 H 1.09001 * 109.47451 * 60.00221 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0052 5 6 1.9209 3.6047 -0.0015 6 6 3.3020 3.6757 -0.0067 7 6 4.0560 2.5171 -0.0059 8 6 3.4311 1.2848 -0.0002 9 6 4.2537 0.0220 0.0001 10 7 4.3146 -0.5231 -1.3627 11 6 5.2058 -1.6892 -1.4239 12 6 5.4374 -2.0695 -2.8636 13 8 4.9112 -1.4321 -3.7513 14 7 6.2290 -3.1178 -3.1648 15 6 6.4393 -3.4641 -4.4745 16 1 5.9707 -2.8965 -5.2650 17 6 7.2550 -4.5452 -4.7851 18 7 7.8247 -5.2361 -3.8232 19 14 7.5420 -5.0166 -6.5696 20 1 6.7935 -4.0872 -7.4536 21 1 8.9923 -4.9312 -6.8770 22 1 7.0688 -6.4056 -6.7970 23 8 2.9777 -0.8587 -1.8532 24 6 2.5976 -0.1506 -3.0348 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2128 2.3204 0.0098 29 1 1.3341 4.5114 -0.0022 30 1 3.7923 4.6380 -0.0115 31 1 5.1344 2.5751 -0.0096 32 1 3.7948 -0.7102 0.6643 33 1 5.2625 0.2457 0.3474 34 1 6.1588 -1.4431 -0.9554 35 1 4.7470 -2.5254 -0.8964 36 1 6.6495 -3.6278 -2.4548 37 1 8.3944 -5.9906 -4.0400 38 1 1.5949 -0.4557 -3.3344 39 1 2.6073 0.9209 -2.8354 40 1 3.3006 -0.3774 -3.8364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810109220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:13 Heat of formation + Delta-G solvation = -30.476105 kcal Electronic energy + Delta-G solvation = -24062.111174 eV Core-core repulsion = 20459.063187 eV Total energy + Delta-G solvation = -3603.047988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.19315 -38.23530 -37.36149 -36.25339 -33.80861 -33.63454 -31.51290 -30.98834 -30.08065 -27.62838 -27.04099 -25.60841 -24.75971 -22.88250 -22.10864 -21.05247 -19.17626 -17.99981 -17.82402 -16.53275 -16.33018 -15.85361 -15.71128 -15.39275 -14.88846 -14.62957 -14.40952 -14.03575 -13.78527 -13.71119 -13.68326 -13.17708 -12.79022 -12.55478 -12.37653 -12.04432 -11.97785 -11.62890 -11.47246 -11.34342 -11.09270 -11.07716 -10.97220 -10.66496 -10.30665 -10.17483 -9.47419 -9.16779 -8.89295 -8.34205 -8.13192 -7.94646 -7.88677 -6.36168 -3.76474 1.29454 1.47990 3.16267 3.20137 3.30044 3.36270 3.37556 3.81784 4.00171 4.21545 4.65790 4.78313 4.85071 5.03395 5.07046 5.11865 5.27555 5.31139 5.33390 5.45235 5.53929 5.61489 5.71820 5.74299 5.93451 6.01022 6.03306 6.22294 6.28901 6.30023 6.36079 6.43602 6.54972 6.80400 6.89399 7.08946 7.47659 7.60680 7.64065 8.12320 8.70595 9.25676 9.61049 10.15431 10.82007 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.029123 B = 0.003466 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.221708 B = 8076.440641 C = 8282.066221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.291 6.291 3 C 0.152 3.848 4 C -0.219 4.219 5 C -0.082 4.082 6 C -0.165 4.165 7 C -0.065 4.065 8 C -0.106 4.106 9 C 0.090 3.910 10 N -0.345 5.345 11 C 0.031 3.969 12 C 0.453 3.547 13 O -0.573 6.573 14 N -0.567 5.567 15 C -0.294 4.294 16 H 0.103 0.897 17 C 0.020 3.980 18 N -0.904 5.904 19 Si 0.928 3.072 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.282 1.282 23 O -0.233 6.233 24 C 0.038 3.962 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.391 0.609 37 H 0.270 0.730 38 H 0.064 0.936 39 H 0.022 0.978 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.775 13.172 11.460 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.203 6.203 3 C 0.105 3.895 4 C -0.238 4.238 5 C -0.101 4.101 6 C -0.183 4.183 7 C -0.083 4.083 8 C -0.107 4.107 9 C -0.037 4.037 10 N -0.112 5.112 11 C -0.100 4.100 12 C 0.238 3.762 13 O -0.457 6.457 14 N -0.204 5.204 15 C -0.424 4.424 16 H 0.121 0.879 17 C -0.181 4.181 18 N -0.545 5.545 19 Si 0.756 3.244 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.209 1.209 23 O -0.239 6.239 24 C -0.060 4.060 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.878 13.433 10.613 20.283 hybrid contribution -0.095 -0.945 0.000 0.950 sum -10.973 12.488 10.613 19.723 Atomic orbital electron populations 1.22997 0.79304 1.03708 1.00632 1.86266 1.20343 1.26047 1.87671 1.18854 0.91813 0.84383 0.94428 1.21181 0.99780 0.92483 1.10309 1.20875 0.94701 0.96743 0.97764 1.20978 0.93873 0.98251 1.05226 1.20900 0.99963 0.90908 0.96568 1.19003 0.90479 0.95259 1.05992 1.21147 0.99280 0.93288 0.90034 1.67332 0.96754 1.27114 1.19965 1.22191 0.96553 0.93271 0.98016 1.19589 0.83755 0.83470 0.89353 1.90350 1.52269 1.54312 1.48752 1.41827 1.42826 1.27002 1.08741 1.19727 1.26779 1.12052 0.83849 0.87925 1.25237 0.96776 0.96375 0.99677 1.69624 1.32402 1.20357 1.32161 0.85815 0.78005 0.78334 0.82266 1.19279 1.20824 1.20852 1.90659 1.23355 1.65358 1.44505 1.22750 0.98971 0.94549 0.89709 0.93292 0.92957 0.88487 0.85839 0.86250 0.86114 0.85337 0.92774 0.88728 0.88190 0.92166 0.77544 0.92031 0.91751 0.95971 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.29 -4.12 7.89 -40.26 -0.32 -4.44 16 3 C 0.15 2.10 6.10 -39.22 -0.24 1.86 16 4 C -0.22 -2.55 9.04 -39.43 -0.36 -2.90 16 5 C -0.08 -0.88 10.04 -39.60 -0.40 -1.27 16 6 C -0.16 -1.80 10.04 -39.56 -0.40 -2.20 16 7 C -0.06 -0.79 9.67 -39.60 -0.38 -1.18 16 8 C -0.11 -1.50 5.29 -104.47 -0.55 -2.05 16 9 C 0.09 1.32 5.20 -4.97 -0.03 1.30 16 10 N -0.34 -6.36 4.43 -116.34 -0.52 -6.87 16 11 C 0.03 0.59 5.76 -4.98 -0.03 0.56 16 12 C 0.45 10.95 7.69 -10.99 -0.08 10.87 16 13 O -0.57 -15.49 12.40 -8.09 -0.10 -15.59 16 14 N -0.57 -14.59 5.29 -10.96 -0.06 -14.65 16 15 C -0.29 -8.29 9.68 -14.94 -0.14 -8.44 16 16 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 17 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 18 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 19 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 O -0.23 -4.62 7.85 -41.73 -0.33 -4.95 16 24 C 0.04 0.72 10.96 101.05 1.11 1.83 16 25 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 26 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.12 1.17 6.30 -52.48 -0.33 0.84 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.13 1.35 8.04 -52.49 -0.42 0.93 16 32 H 0.05 0.80 7.86 -51.93 -0.41 0.39 16 33 H 0.09 1.15 7.90 -51.93 -0.41 0.74 16 34 H 0.10 1.60 8.00 -51.93 -0.42 1.18 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 1.95 5.18 -51.93 -0.27 1.68 16 LS Contribution 337.21 15.07 5.08 5.08 Total: -1.00 -32.96 337.21 -6.56 -39.52 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.42 Total: 9.65 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -0.61 Total: 0.11 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.15 Total: -45.69 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.75 Total: -24.97 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.96 -6.56 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810109220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.048 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds