Wall clock time and date at job start Fri Apr 10 2020 17:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35896 * 117.00441 * 2 1 4 4 C 1.38759 * 120.05286 * 0.24917 * 3 2 1 5 5 C 1.38118 * 119.94512 * 180.31943 * 4 3 2 6 6 C 1.38296 * 120.05619 * 359.68306 * 5 4 3 7 7 C 1.38243 * 120.10905 * 0.02562 * 6 5 4 8 8 C 1.38170 * 120.05451 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.02671 * 179.97438 * 8 7 6 10 10 N 1.46906 * 109.47109 * 260.00473 * 9 8 7 11 11 C 1.46896 * 111.00013 * 175.00097 * 10 9 8 12 12 C 1.50703 * 109.47119 * 190.00094 * 11 10 9 13 13 O 1.21290 * 119.99646 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99978 * 179.97438 * 12 11 10 15 15 C 1.37098 * 120.00210 * 179.97438 * 14 12 11 16 16 H 1.08007 * 119.99372 * 0.02562 * 15 14 12 17 17 C 1.38943 * 120.00577 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99694 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00329 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47237 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46954 * 120.00078 * 19 17 15 22 22 H 1.48498 * 109.47444 * 239.99924 * 19 17 15 23 23 O 1.46304 * 110.99696 * 298.95323 * 10 9 8 24 24 C 1.42898 * 113.99470 * 119.99967 * 23 10 9 25 25 H 1.08998 * 109.46894 * 299.99813 * 1 2 3 26 26 H 1.08999 * 109.46962 * 60.00335 * 1 2 3 27 27 H 1.08994 * 109.47203 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.03045 * 0.02990 * 4 3 2 29 29 H 1.08001 * 119.97673 * 179.70488 * 5 4 3 30 30 H 1.08000 * 119.94496 * 180.02562 * 6 5 4 31 31 H 1.07995 * 119.97355 * 180.02562 * 7 6 5 32 32 H 1.08992 * 109.46894 * 140.00209 * 9 8 7 33 33 H 1.09004 * 109.47113 * 20.00359 * 9 8 7 34 34 H 1.09001 * 109.47061 * 309.99578 * 11 10 9 35 35 H 1.08997 * 109.47526 * 69.99455 * 11 10 9 36 36 H 0.96999 * 120.00092 * 0.02562 * 14 12 11 37 37 H 0.96999 * 119.99830 * 180.02562 * 18 17 15 38 38 H 1.09005 * 109.46867 * 179.97438 * 24 23 10 39 39 H 1.08994 * 109.47928 * 299.99364 * 24 23 10 40 40 H 1.09001 * 109.47451 * 60.00221 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0052 5 6 1.9209 3.6047 -0.0015 6 6 3.3020 3.6757 -0.0067 7 6 4.0560 2.5171 -0.0059 8 6 3.4311 1.2848 -0.0002 9 6 4.2537 0.0220 0.0001 10 7 4.3146 -0.5231 -1.3627 11 6 5.2058 -1.6892 -1.4239 12 6 5.4374 -2.0695 -2.8636 13 8 4.9112 -1.4321 -3.7513 14 7 6.2290 -3.1178 -3.1648 15 6 6.4393 -3.4641 -4.4745 16 1 5.9707 -2.8965 -5.2650 17 6 7.2550 -4.5452 -4.7851 18 7 7.8247 -5.2361 -3.8232 19 14 7.5420 -5.0166 -6.5696 20 1 6.7935 -4.0872 -7.4536 21 1 8.9923 -4.9312 -6.8770 22 1 7.0688 -6.4056 -6.7970 23 8 2.9777 -0.8587 -1.8532 24 6 2.5976 -0.1506 -3.0348 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2128 2.3204 0.0098 29 1 1.3341 4.5114 -0.0022 30 1 3.7923 4.6380 -0.0115 31 1 5.1344 2.5751 -0.0096 32 1 3.7948 -0.7102 0.6643 33 1 5.2625 0.2457 0.3474 34 1 6.1588 -1.4431 -0.9554 35 1 4.7470 -2.5254 -0.8964 36 1 6.6495 -3.6278 -2.4548 37 1 8.3944 -5.9906 -4.0400 38 1 1.5949 -0.4557 -3.3344 39 1 2.6073 0.9209 -2.8354 40 1 3.3006 -0.3774 -3.8364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810109220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:12 Heat of formation + Delta-G solvation = -51.855916 kcal Electronic energy + Delta-G solvation = -24063.038272 eV Core-core repulsion = 20459.063187 eV Total energy + Delta-G solvation = -3603.975086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10711 -40.08194 -38.31766 -37.68597 -35.84756 -34.96879 -33.25597 -32.45001 -30.94729 -28.89723 -28.06382 -27.01199 -26.59337 -24.29688 -22.97283 -22.06815 -21.03812 -19.89791 -18.87501 -17.96150 -17.69106 -17.08284 -16.91439 -16.54649 -16.30145 -16.15040 -15.67470 -15.55310 -15.41470 -15.24432 -14.69747 -14.57582 -13.90251 -13.85236 -13.63892 -13.47898 -13.41960 -13.05381 -12.82851 -12.78385 -12.40277 -12.36070 -12.24754 -12.10066 -11.90551 -11.60921 -11.47296 -10.70970 -10.12485 -9.95669 -9.84812 -9.50670 -8.97527 -8.43481 -5.91353 0.39426 0.59580 1.37887 1.42509 1.56655 1.80168 2.10582 2.32014 2.52986 2.88700 3.16908 3.24390 3.76412 3.92731 4.08246 4.23451 4.29404 4.35693 4.40834 4.40950 4.47588 4.51874 4.57024 4.60839 4.67172 4.71888 4.73633 4.87157 4.89622 5.12207 5.23192 5.44050 5.45706 5.57025 5.66646 5.73232 5.96971 6.05751 6.16623 6.60565 6.66551 7.18336 7.60171 8.18823 8.74537 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.029123 B = 0.003466 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.221708 B = 8076.440641 C = 8282.066221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.319 6.319 3 C 0.133 3.867 4 C -0.225 4.225 5 C -0.082 4.082 6 C -0.169 4.169 7 C -0.073 4.073 8 C -0.135 4.135 9 C 0.093 3.907 10 N -0.355 5.355 11 C 0.041 3.959 12 C 0.448 3.552 13 O -0.604 6.604 14 N -0.576 5.576 15 C -0.327 4.327 16 H 0.079 0.921 17 C -0.015 4.015 18 N -0.923 5.923 19 Si 0.992 3.008 20 H -0.274 1.274 21 H -0.271 1.271 22 H -0.273 1.273 23 O -0.247 6.247 24 C 0.051 3.949 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.050 0.950 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.070 0.930 36 H 0.395 0.605 37 H 0.276 0.724 38 H 0.081 0.919 39 H 0.026 0.974 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.964 14.224 12.178 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.232 6.232 3 C 0.087 3.913 4 C -0.243 4.243 5 C -0.100 4.100 6 C -0.187 4.187 7 C -0.092 4.092 8 C -0.136 4.136 9 C -0.034 4.034 10 N -0.124 5.124 11 C -0.090 4.090 12 C 0.235 3.765 13 O -0.490 6.490 14 N -0.214 5.214 15 C -0.456 4.456 16 H 0.097 0.903 17 C -0.214 4.214 18 N -0.564 5.564 19 Si 0.816 3.184 20 H -0.198 1.198 21 H -0.196 1.196 22 H -0.198 1.198 23 O -0.253 6.253 24 C -0.046 4.046 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.122 0.878 28 H 0.160 0.840 29 H 0.166 0.834 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.068 0.932 33 H 0.138 0.862 34 H 0.152 0.848 35 H 0.088 0.912 36 H 0.229 0.771 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.044 0.956 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.076 14.485 11.362 21.485 hybrid contribution -0.091 -1.187 -0.163 1.202 sum -11.167 13.298 11.199 20.663 Atomic orbital electron populations 1.23192 0.77647 1.04595 1.01742 1.86213 1.22270 1.26758 1.87920 1.19100 0.92104 0.84954 0.95128 1.21460 1.00778 0.92241 1.09863 1.21283 0.95002 0.97468 0.96209 1.21329 0.94222 0.98863 1.04276 1.21152 1.00876 0.90827 0.96303 1.19133 0.90914 0.95470 1.08060 1.21253 1.00978 0.93484 0.87682 1.67358 0.95911 1.26459 1.22630 1.22116 0.98547 0.94216 0.94165 1.20559 0.82180 0.82277 0.91506 1.90362 1.53008 1.55047 1.50554 1.41881 1.43604 1.27779 1.08105 1.19673 1.28262 1.13125 0.84588 0.90333 1.26009 0.95921 0.95719 1.03750 1.69685 1.32397 1.20537 1.33804 0.84881 0.78224 0.78037 0.77245 1.19829 1.19591 1.19797 1.90630 1.24491 1.65751 1.44381 1.22558 0.98807 0.94789 0.88460 0.91421 0.92500 0.87829 0.84043 0.83396 0.83692 0.84100 0.93206 0.86201 0.84806 0.91185 0.77111 0.91428 0.90056 0.95556 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.32 -8.85 7.89 -72.45 -0.57 -9.42 16 3 C 0.13 3.56 6.10 22.51 0.14 3.70 16 4 C -0.22 -4.81 9.04 22.37 0.20 -4.60 16 5 C -0.08 -1.51 10.04 22.26 0.22 -1.29 16 6 C -0.17 -3.26 10.04 22.28 0.22 -3.04 16 7 C -0.07 -1.67 9.67 22.25 0.22 -1.45 16 8 C -0.13 -3.66 5.29 -19.77 -0.10 -3.77 16 9 C 0.09 2.63 5.20 85.56 0.44 3.07 16 10 N -0.36 -12.94 4.43 -521.98 -2.31 -15.25 16 11 C 0.04 1.51 5.76 85.56 0.49 2.00 16 12 C 0.45 21.98 7.69 87.66 0.67 22.66 16 13 O -0.60 -33.67 12.40 9.98 0.12 -33.54 16 14 N -0.58 -30.17 5.29 -306.99 -1.62 -31.79 16 15 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 16 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 17 C -0.01 -0.80 5.50 84.92 0.47 -0.33 16 18 N -0.92 -50.55 13.05 21.66 0.28 -50.27 16 19 Si 0.99 43.65 29.55 68.60 2.03 45.68 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 O -0.25 -9.87 7.85 -23.58 -0.19 -10.06 16 24 C 0.05 1.99 10.96 113.37 1.24 3.24 16 25 H 0.07 0.97 7.65 -2.39 -0.02 0.96 16 26 H 0.06 0.98 7.67 -2.39 -0.02 0.96 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.14 2.37 6.30 -2.91 -0.02 2.35 16 29 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.14 2.71 8.04 -2.91 -0.02 2.68 16 32 H 0.05 1.44 7.86 -2.39 -0.02 1.42 16 33 H 0.12 2.69 7.90 -2.38 -0.02 2.67 16 34 H 0.13 4.03 8.00 -2.39 -0.02 4.01 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 37 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 38 H 0.08 2.77 8.14 -2.38 -0.02 2.75 16 39 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.05 2.33 5.18 -2.39 -0.01 2.32 16 Total: -1.00 -71.94 337.21 4.21 -67.73 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.33 Total: 33.22 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 6.14 Total: 3.71 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -3.65 Total: -97.30 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -0.63 Total: -53.03 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -71.94 4.21 -67.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810109220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.870 kcal (2) G-P(sol) polarization free energy of solvation -71.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds