Wall clock time and date at job start Fri Apr 10 2020 17:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39878 * 125.89456 * 2 1 4 4 C 1.35316 * 107.91913 * 179.97438 * 3 2 1 5 5 N 1.34957 * 107.74619 * 0.02562 * 4 3 2 6 6 C 1.46499 * 126.03564 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46840 * 125.00168 * 6 5 4 8 8 H 1.08990 * 109.47170 * 54.99738 * 7 6 5 9 9 C 1.53005 * 109.46867 * 294.99527 * 7 6 5 10 10 C 1.50700 * 109.46738 * 174.99952 * 7 6 5 11 11 O 1.21278 * 120.00548 * 359.97438 * 10 7 6 12 12 N 1.34782 * 119.99764 * 179.97438 * 10 7 6 13 13 C 1.46505 * 120.00001 * 179.97438 * 12 10 7 14 14 C 1.50701 * 109.47100 * 179.97438 * 13 12 10 15 15 O 1.21292 * 119.99587 * 0.02562 * 14 13 12 16 16 N 1.34770 * 119.99738 * 179.97438 * 14 13 12 17 17 C 1.37097 * 119.99831 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00046 * 0.02562 * 17 16 14 19 19 C 1.38950 * 120.00100 * 179.97438 * 17 16 14 20 20 N 1.31418 * 120.00206 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99929 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47084 * 89.99951 * 21 19 17 23 23 H 1.48501 * 109.47200 * 209.99629 * 21 19 17 24 24 H 1.48502 * 109.47134 * 329.99520 * 21 19 17 25 25 N 1.30838 * 125.90463 * 180.30588 * 2 1 3 26 26 H 1.08996 * 109.46654 * 90.00014 * 1 2 3 27 27 H 1.09002 * 109.46467 * 209.99500 * 1 2 3 28 28 H 1.08995 * 109.46919 * 329.99860 * 1 2 3 29 29 H 1.07996 * 126.03942 * 0.02562 * 3 2 1 30 30 H 1.08002 * 126.12972 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47391 * 4.99837 * 6 5 4 32 32 H 1.09001 * 109.46813 * 244.99894 * 6 5 4 33 33 H 1.09001 * 109.47099 * 60.00379 * 9 7 6 34 34 H 1.09004 * 109.46908 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.47443 * 300.00098 * 9 7 6 36 36 H 0.97002 * 119.99790 * 359.97438 * 12 10 7 37 37 H 1.08994 * 109.46912 * 300.00271 * 13 12 10 38 38 H 1.09000 * 109.46646 * 60.00028 * 13 12 10 39 39 H 0.96994 * 120.00646 * 0.02562 * 16 14 13 40 40 H 0.96993 * 120.00015 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 0.0006 5 7 3.6088 -0.6340 0.0004 6 6 4.7900 -1.5006 0.0003 7 6 4.7117 -2.4696 1.1817 8 1 3.7705 -3.0176 1.1403 9 6 4.7867 -1.6832 2.4921 10 6 5.8621 -3.4406 1.1120 11 8 6.6652 -3.3654 0.2064 12 7 5.9984 -4.3927 2.0563 13 6 7.1164 -5.3370 1.9883 14 6 7.0400 -6.2906 3.1527 15 8 6.1399 -6.1914 3.9597 16 7 7.9712 -7.2541 3.2968 17 6 7.9020 -8.1213 4.3564 18 1 7.1011 -8.0325 5.0755 19 6 8.8618 -9.1151 4.5047 20 7 8.7952 -9.9467 5.5201 21 14 10.2467 -9.2691 3.2606 22 1 11.3980 -8.4383 3.6961 23 1 10.6697 -10.6893 3.1640 24 1 9.7734 -8.8022 1.9327 25 7 2.2743 -1.0598 -0.0057 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.9922 2.1599 0.0004 30 1 4.4892 1.3488 0.0003 31 1 5.6886 -0.8901 0.0900 32 1 4.8261 -2.0655 -0.9312 33 1 3.9547 -0.9808 2.5425 34 1 4.7314 -2.3735 3.3338 35 1 5.7280 -1.1350 2.5335 36 1 5.3562 -4.4526 2.7808 37 1 7.0623 -5.8975 1.0550 38 1 8.0577 -4.7890 2.0290 39 1 8.6907 -7.3337 2.6512 40 1 9.4654 -10.6401 5.6238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868316811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:35 Heat of formation + Delta-G solvation = -26.074595 kcal Electronic energy + Delta-G solvation = -22636.486300 eV Core-core repulsion = 19065.921927 eV Total energy + Delta-G solvation = -3570.564373 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.15981 -41.21220 -40.13527 -36.43294 -36.25830 -35.42341 -33.86506 -33.37380 -30.91553 -29.97409 -29.19600 -26.90659 -26.34812 -23.95370 -22.00386 -21.51034 -21.29406 -20.63636 -20.25140 -18.68583 -17.76417 -17.53111 -17.01993 -16.83765 -16.60056 -16.32546 -15.85016 -15.31710 -15.03037 -14.93704 -14.80995 -14.37600 -14.26725 -14.06641 -13.94961 -13.71459 -13.53416 -13.40039 -13.20992 -12.97692 -12.85714 -12.46567 -12.39681 -12.29520 -12.01892 -11.59996 -11.41799 -11.02965 -10.68937 -10.36229 -10.23724 -10.15585 -9.43591 -8.47252 -6.09671 0.99911 1.29710 1.32556 1.42669 1.45814 1.48289 1.77295 1.92065 2.04640 2.19158 2.84060 3.08799 3.38932 3.51964 3.73684 3.92957 3.99045 4.03558 4.14555 4.31546 4.38399 4.39187 4.53069 4.53868 4.68320 4.81038 4.86075 4.88195 4.98129 5.08690 5.10407 5.17933 5.29619 5.46317 5.83014 5.86054 6.16057 6.37578 6.46605 6.76262 6.84917 7.01859 7.27015 7.75895 8.69166 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.038774 B = 0.002496 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.960679 B =11217.285104 C =11603.565492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.054 3.946 3 C -0.285 4.285 4 C 0.059 3.941 5 N -0.376 5.376 6 C 0.158 3.842 7 C -0.111 4.111 8 H 0.105 0.895 9 C -0.136 4.136 10 C 0.529 3.471 11 O -0.570 6.570 12 N -0.708 5.708 13 C 0.117 3.883 14 C 0.443 3.557 15 O -0.616 6.616 16 N -0.577 5.577 17 C -0.332 4.332 18 H 0.063 0.937 19 C -0.009 4.009 20 N -0.926 5.926 21 Si 0.960 3.040 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.232 1.232 25 N -0.338 5.338 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.167 0.833 30 H 0.206 0.794 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.413 0.587 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.392 0.608 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.604 22.839 -13.944 27.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.112 4.112 3 C -0.314 4.314 4 C -0.087 4.087 5 N -0.158 5.158 6 C 0.037 3.963 7 C -0.133 4.133 8 H 0.123 0.877 9 C -0.193 4.193 10 C 0.316 3.684 11 O -0.450 6.450 12 N -0.361 5.361 13 C -0.011 4.011 14 C 0.231 3.769 15 O -0.502 6.502 16 N -0.217 5.217 17 C -0.461 4.461 18 H 0.081 0.919 19 C -0.209 4.209 20 N -0.565 5.565 21 Si 0.780 3.220 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.156 1.156 25 N -0.162 5.162 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.184 0.816 30 H 0.222 0.778 31 H 0.142 0.858 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.251 0.749 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.228 0.772 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.363 21.392 -13.917 26.561 hybrid contribution 0.518 -0.075 0.258 0.583 sum -6.846 21.316 -13.659 26.226 Atomic orbital electron populations 1.20260 0.85217 1.03899 1.03575 1.22956 0.98269 0.91074 0.98880 1.21722 0.91636 1.00420 1.17592 1.23191 1.00991 0.84415 1.00103 1.48662 1.04824 1.05372 1.56940 1.21469 0.84208 0.92480 0.98165 1.21412 0.97611 0.95960 0.98271 0.87689 1.21714 1.03247 1.00221 0.94165 1.20576 0.86324 0.80860 0.80669 1.90689 1.45440 1.73609 1.35257 1.45746 1.29499 1.31456 1.29406 1.20930 0.92171 0.91187 0.96778 1.20542 0.83643 0.84026 0.88708 1.90536 1.37393 1.74800 1.47442 1.41926 1.26061 1.28683 1.25045 1.19023 1.12775 1.10305 1.04005 0.91936 1.26096 1.00898 0.94543 0.99377 1.69782 1.36994 1.18537 1.31201 0.85429 0.78185 0.79230 0.79168 1.17967 1.19887 1.15559 1.77267 0.87568 1.24412 1.26967 0.89825 0.91592 0.88565 0.81550 0.77761 0.85829 0.89850 0.91486 0.91666 0.90803 0.74909 0.87714 0.87255 0.77171 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.45 71.24 0.74 -0.19 16 2 C 0.05 1.06 7.22 43.10 0.31 1.37 16 3 C -0.28 -4.48 10.74 21.99 0.24 -4.24 16 4 C 0.06 0.88 11.45 83.54 0.96 1.83 16 5 N -0.38 -7.47 3.13 -348.05 -1.09 -8.56 16 6 C 0.16 2.98 5.25 86.38 0.45 3.43 16 7 C -0.11 -2.32 2.81 -11.54 -0.03 -2.35 16 8 H 0.11 2.42 8.06 -2.39 -0.02 2.40 16 9 C -0.14 -2.51 8.98 71.98 0.65 -1.87 16 10 C 0.53 13.88 7.15 87.66 0.63 14.50 16 11 O -0.57 -17.29 15.92 -3.02 -0.05 -17.34 16 12 N -0.71 -20.53 5.42 -466.78 -2.53 -23.06 16 13 C 0.12 3.64 6.15 85.63 0.53 4.17 16 14 C 0.44 18.93 7.85 87.66 0.69 19.62 16 15 O -0.62 -31.42 15.24 -3.07 -0.05 -31.47 16 16 N -0.58 -26.13 5.09 -306.99 -1.56 -27.69 16 17 C -0.33 -18.72 10.16 84.04 0.85 -17.87 16 18 H 0.06 4.18 7.39 -2.91 -0.02 4.16 16 19 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 20 N -0.93 -54.16 13.96 21.66 0.30 -53.85 16 21 Si 0.96 37.63 27.74 68.60 1.90 39.53 16 22 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 23 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 24 H -0.23 -7.72 6.52 99.48 0.65 -7.08 16 25 N -0.34 -8.19 12.35 -47.38 -0.59 -8.77 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 30 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.12 1.80 8.07 -2.39 -0.02 1.78 16 32 H 0.08 1.76 7.95 -2.39 -0.02 1.74 16 33 H 0.07 1.25 7.75 -2.39 -0.02 1.23 16 34 H 0.06 1.29 7.56 -2.38 -0.02 1.27 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.41 12.45 6.85 -92.71 -0.64 11.81 16 37 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.39 14.78 5.76 -92.71 -0.53 14.25 16 40 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -75.56 345.96 2.66 -72.89 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -0.16 Total: 39.94 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 6.48 Total: 18.38 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -5.46 Total: -121.94 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.09 Total: -48.81 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 1.90 Total: 39.53 kcal Total: -75.56 2.66 -72.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868316811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.817 kcal (2) G-P(sol) polarization free energy of solvation -75.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds