Wall clock time and date at job start Fri Apr 10 2020 17:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.46300 * 113.99778 * 2 1 4 4 C 1.46906 * 111.00214 * 116.04679 * 3 2 1 5 5 C 1.46899 * 111.00548 * 239.99907 * 3 2 1 6 6 C 1.52997 * 109.47312 * 174.99871 * 5 3 2 7 7 N 1.46499 * 109.47058 * 180.02562 * 6 5 3 8 8 C 1.34776 * 120.00532 * 180.02562 * 7 6 5 9 9 O 1.21596 * 119.99483 * 0.02562 * 8 7 6 10 10 C 1.47529 * 120.00576 * 179.97438 * 8 7 6 11 11 C 1.39668 * 120.19410 * 0.02562 * 10 8 7 12 12 C 1.37835 * 119.91853 * 179.97438 * 11 10 8 13 13 C 1.38573 * 120.31903 * 0.02562 * 12 11 10 14 14 C 1.38022 * 120.40696 * 0.02562 * 13 12 11 15 15 C 1.38831 * 120.06839 * 359.95623 * 14 13 12 16 16 O 1.35527 * 120.16025 * 180.02562 * 15 14 13 17 17 C 1.34817 * 116.99627 * 354.39561 * 16 15 14 18 18 H 1.07998 * 120.00286 * 5.06815 * 17 16 15 19 19 C 1.38705 * 119.99676 * 185.06799 * 17 16 15 20 20 N 1.31514 * 119.99991 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99619 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47501 * 60.00015 * 21 19 17 23 23 H 1.48510 * 109.46856 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47250 * 299.99489 * 21 19 17 25 25 H 1.09001 * 109.47228 * 299.99459 * 1 2 3 26 26 H 1.09000 * 109.47330 * 59.99942 * 1 2 3 27 27 H 1.09003 * 109.46911 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47625 * 183.95455 * 4 3 2 29 29 H 1.09001 * 109.46901 * 303.95958 * 4 3 2 30 30 H 1.09005 * 109.46886 * 63.95318 * 4 3 2 31 31 H 1.09004 * 109.46705 * 54.99873 * 5 3 2 32 32 H 1.09000 * 109.46914 * 295.00471 * 5 3 2 33 33 H 1.08999 * 109.46796 * 60.00478 * 6 5 3 34 34 H 1.08995 * 109.47178 * 300.00005 * 6 5 3 35 35 H 0.97003 * 120.00039 * 0.02562 * 7 6 5 36 36 H 1.07997 * 120.04248 * 0.26955 * 11 10 8 37 37 H 1.07992 * 119.83718 * 179.97438 * 12 11 10 38 38 H 1.08000 * 119.79251 * 179.97438 * 13 12 11 39 39 H 1.07996 * 119.96390 * 179.97438 * 14 13 12 40 40 H 0.96997 * 120.00153 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0239 1.3365 0.0000 4 6 2.7882 1.5726 1.2322 5 6 2.8645 1.5387 -1.1876 6 6 3.3672 2.9835 -1.2168 7 7 4.2050 3.1852 -2.4015 8 6 4.7616 4.3900 -2.6362 9 8 4.5687 5.3095 -1.8642 10 6 5.6057 4.5930 -3.8290 11 6 5.8304 3.5396 -4.7180 12 6 6.6196 3.7357 -5.8309 13 6 7.1927 4.9740 -6.0727 14 6 6.9804 6.0240 -5.2024 15 6 6.1880 5.8449 -4.0765 16 8 5.9778 6.8747 -3.2209 17 6 6.6590 8.0142 -3.4558 18 1 7.2721 8.1043 -4.3403 19 6 6.5725 9.0707 -2.5613 20 7 5.8255 8.9611 -1.4844 21 14 7.5158 10.6498 -2.8870 22 1 7.0711 11.2349 -4.1774 23 1 7.2572 11.6162 -1.7894 24 1 8.9694 10.3535 -2.9526 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1610 2.5969 1.2380 29 1 2.1422 1.4161 2.0960 30 1 3.6287 0.8798 1.2768 31 1 2.2791 1.3395 -2.0853 32 1 3.7155 0.8585 -1.1505 33 1 3.9526 3.1826 -0.3192 34 1 2.5162 3.6635 -1.2539 35 1 4.3592 2.4516 -3.0172 36 1 5.3824 2.5738 -4.5363 37 1 6.7928 2.9201 -6.5173 38 1 7.8100 5.1181 -6.9471 39 1 7.4308 6.9859 -5.3975 40 1 5.7653 9.6998 -0.8587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880642823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:41 Heat of formation + Delta-G solvation = -20.731965 kcal Electronic energy + Delta-G solvation = -23108.730830 eV Core-core repulsion = 19506.105380 eV Total energy + Delta-G solvation = -3602.625450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.62197 -38.31612 -37.51405 -36.34162 -35.18483 -33.25412 -32.34174 -30.71376 -28.94357 -28.52534 -26.83416 -25.45437 -24.90811 -22.89911 -21.64334 -21.10992 -19.92424 -18.05463 -17.56560 -17.22966 -16.19878 -15.95808 -15.52943 -15.21006 -14.94497 -14.64893 -14.20877 -14.17698 -14.00277 -13.81164 -13.57647 -13.42602 -12.95971 -12.67412 -12.52881 -12.37098 -12.01757 -11.71794 -11.69184 -11.36128 -11.16288 -11.12087 -10.88507 -10.80051 -10.47986 -10.23643 -9.58836 -8.98933 -8.88495 -8.86900 -8.60035 -8.27852 -7.31709 -6.44594 -4.04662 1.70692 2.27292 2.31404 3.11686 3.13763 3.16190 3.73464 3.74313 3.93471 4.52931 4.63293 4.92191 4.96332 5.06607 5.17062 5.25493 5.28107 5.30061 5.37990 5.41852 5.45664 5.52055 5.54502 5.66977 5.72867 5.90814 5.97068 6.10785 6.12178 6.42427 6.55647 6.67917 6.76489 6.88854 6.91340 7.05347 7.23115 7.28559 7.68717 7.91322 8.08092 8.94729 9.06932 9.66951 10.69111 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.003582 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.345916 B = 7814.186715 C = 9284.582137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.267 6.267 3 N -0.363 5.363 4 C 0.003 3.997 5 C 0.032 3.968 6 C 0.130 3.870 7 N -0.743 5.743 8 C 0.556 3.444 9 O -0.499 6.499 10 C -0.227 4.227 11 C -0.038 4.038 12 C -0.231 4.231 13 C -0.051 4.051 14 C -0.238 4.238 15 C 0.189 3.811 16 O -0.123 6.123 17 C -0.405 4.405 18 H 0.094 0.906 19 C 0.045 3.955 20 N -0.832 5.832 21 Si 0.941 3.059 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.392 0.608 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.754 -14.465 -0.963 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.271 6.271 3 N -0.132 5.132 4 C -0.146 4.146 5 C -0.097 4.097 6 C 0.005 3.995 7 N -0.401 5.401 8 C 0.345 3.655 9 O -0.373 6.373 10 C -0.232 4.232 11 C -0.057 4.057 12 C -0.250 4.250 13 C -0.069 4.069 14 C -0.257 4.257 15 C 0.130 3.870 16 O -0.021 6.021 17 C -0.480 4.480 18 H 0.111 0.889 19 C -0.163 4.163 20 N -0.464 5.464 21 Si 0.765 3.235 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.194 1.194 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.227 0.773 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.425 -13.413 0.079 14.469 hybrid contribution 1.091 -0.141 -0.552 1.230 sum -4.334 -13.554 -0.473 14.238 Atomic orbital electron populations 1.22612 0.80616 1.01531 1.00793 1.90672 1.20910 1.18627 1.96930 1.67513 1.34269 1.08152 1.03222 1.22856 0.97334 1.02457 0.91917 1.22540 0.96422 0.96821 0.93878 1.21067 0.95166 0.93907 0.89320 1.45773 1.53557 1.13666 1.27054 1.18211 0.79729 0.81670 0.85842 1.90957 1.59102 1.40366 1.46852 1.18809 1.10874 0.93526 1.00015 1.20760 0.95694 0.96045 0.93192 1.20462 1.06264 0.97725 1.00566 1.20900 0.96221 0.92671 0.97126 1.21157 1.06514 1.00689 0.97335 1.19268 0.90918 0.87610 0.89245 1.84174 1.55548 1.18275 1.44135 1.21456 1.27490 0.89789 1.09300 0.88910 1.25383 0.97047 0.99120 0.94735 1.70114 1.34352 1.32132 1.09754 0.85797 0.79473 0.79769 0.78474 1.19359 1.20149 1.19376 0.93709 0.93567 0.89513 0.88472 0.90502 0.94085 0.89364 0.93060 0.91408 0.90633 0.77325 0.87059 0.87268 0.87175 0.85058 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.51 101.05 1.16 1.53 16 2 O -0.27 -3.18 10.96 -13.92 -0.15 -3.33 16 3 N -0.36 -4.32 5.14 -121.13 -0.62 -4.94 16 4 C 0.00 0.03 9.77 60.07 0.59 0.61 16 5 C 0.03 0.37 5.63 -3.83 -0.02 0.35 16 6 C 0.13 1.87 5.47 -4.04 -0.02 1.84 16 7 N -0.74 -11.82 5.51 -61.35 -0.34 -12.16 16 8 C 0.56 12.14 7.76 -12.47 -0.10 12.04 16 9 O -0.50 -13.61 15.17 -16.57 -0.25 -13.86 16 10 C -0.23 -4.91 5.89 -104.81 -0.62 -5.52 16 11 C -0.04 -0.64 9.54 -39.20 -0.37 -1.02 16 12 C -0.23 -3.75 10.03 -39.61 -0.40 -4.15 16 13 C -0.05 -0.89 10.03 -39.54 -0.40 -1.28 16 14 C -0.24 -5.08 9.16 -39.44 -0.36 -5.44 16 15 C 0.19 4.69 6.66 -38.60 -0.26 4.43 16 16 O -0.12 -3.63 7.84 -21.08 -0.17 -3.80 16 17 C -0.40 -11.42 9.49 30.90 0.29 -11.13 16 18 H 0.09 2.37 5.21 -52.49 -0.27 2.09 16 19 C 0.05 1.25 5.49 -17.51 -0.10 1.16 16 20 N -0.83 -25.03 13.67 55.48 0.76 -24.27 16 21 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 1.03 6.33 -51.93 -0.33 0.70 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.02 6.42 -51.93 -0.33 0.69 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.39 4.93 6.50 -40.82 -0.27 4.66 16 36 H 0.11 1.43 6.40 -52.49 -0.34 1.10 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -35.06 341.64 -6.44 -41.49 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.20 Total: 6.87 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -0.60 Total: -6.58 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.20 Total: -41.38 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.57 Total: -20.99 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.06 -6.44 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880642823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.761 kcal (2) G-P(sol) polarization free energy of solvation -35.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds