Wall clock time and date at job start Fri Apr 10 2020 17:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.46300 * 113.99778 * 2 1 4 4 C 1.46906 * 111.00214 * 116.04679 * 3 2 1 5 5 C 1.46899 * 111.00548 * 239.99907 * 3 2 1 6 6 C 1.52997 * 109.47312 * 174.99871 * 5 3 2 7 7 N 1.46499 * 109.47058 * 180.02562 * 6 5 3 8 8 C 1.34776 * 120.00532 * 180.02562 * 7 6 5 9 9 O 1.21596 * 119.99483 * 0.02562 * 8 7 6 10 10 C 1.47529 * 120.00576 * 179.97438 * 8 7 6 11 11 C 1.39668 * 120.19410 * 0.02562 * 10 8 7 12 12 C 1.37835 * 119.91853 * 179.97438 * 11 10 8 13 13 C 1.38573 * 120.31903 * 0.02562 * 12 11 10 14 14 C 1.38022 * 120.40696 * 0.02562 * 13 12 11 15 15 C 1.38831 * 120.06839 * 359.95623 * 14 13 12 16 16 O 1.35527 * 120.16025 * 180.02562 * 15 14 13 17 17 C 1.34817 * 116.99627 * 354.39561 * 16 15 14 18 18 H 1.07998 * 120.00286 * 5.06815 * 17 16 15 19 19 C 1.38705 * 119.99676 * 185.06799 * 17 16 15 20 20 N 1.31514 * 119.99991 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99619 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47501 * 60.00015 * 21 19 17 23 23 H 1.48510 * 109.46856 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47250 * 299.99489 * 21 19 17 25 25 H 1.09001 * 109.47228 * 299.99459 * 1 2 3 26 26 H 1.09000 * 109.47330 * 59.99942 * 1 2 3 27 27 H 1.09003 * 109.46911 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47625 * 183.95455 * 4 3 2 29 29 H 1.09001 * 109.46901 * 303.95958 * 4 3 2 30 30 H 1.09005 * 109.46886 * 63.95318 * 4 3 2 31 31 H 1.09004 * 109.46705 * 54.99873 * 5 3 2 32 32 H 1.09000 * 109.46914 * 295.00471 * 5 3 2 33 33 H 1.08999 * 109.46796 * 60.00478 * 6 5 3 34 34 H 1.08995 * 109.47178 * 300.00005 * 6 5 3 35 35 H 0.97003 * 120.00039 * 0.02562 * 7 6 5 36 36 H 1.07997 * 120.04248 * 0.26955 * 11 10 8 37 37 H 1.07992 * 119.83718 * 179.97438 * 12 11 10 38 38 H 1.08000 * 119.79251 * 179.97438 * 13 12 11 39 39 H 1.07996 * 119.96390 * 179.97438 * 14 13 12 40 40 H 0.96997 * 120.00153 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0239 1.3365 0.0000 4 6 2.7882 1.5726 1.2322 5 6 2.8645 1.5387 -1.1876 6 6 3.3672 2.9835 -1.2168 7 7 4.2050 3.1852 -2.4015 8 6 4.7616 4.3900 -2.6362 9 8 4.5687 5.3095 -1.8642 10 6 5.6057 4.5930 -3.8290 11 6 5.8304 3.5396 -4.7180 12 6 6.6196 3.7357 -5.8309 13 6 7.1927 4.9740 -6.0727 14 6 6.9804 6.0240 -5.2024 15 6 6.1880 5.8449 -4.0765 16 8 5.9778 6.8747 -3.2209 17 6 6.6590 8.0142 -3.4558 18 1 7.2721 8.1043 -4.3403 19 6 6.5725 9.0707 -2.5613 20 7 5.8255 8.9611 -1.4844 21 14 7.5158 10.6498 -2.8870 22 1 7.0711 11.2349 -4.1774 23 1 7.2572 11.6162 -1.7894 24 1 8.9694 10.3535 -2.9526 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1610 2.5969 1.2380 29 1 2.1422 1.4161 2.0960 30 1 3.6287 0.8798 1.2768 31 1 2.2791 1.3395 -2.0853 32 1 3.7155 0.8585 -1.1505 33 1 3.9526 3.1826 -0.3192 34 1 2.5162 3.6635 -1.2539 35 1 4.3592 2.4516 -3.0172 36 1 5.3824 2.5738 -4.5363 37 1 6.7928 2.9201 -6.5173 38 1 7.8100 5.1181 -6.9471 39 1 7.4308 6.9859 -5.3975 40 1 5.7653 9.6998 -0.8587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880642823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:41 Heat of formation + Delta-G solvation = -47.237447 kcal Electronic energy + Delta-G solvation = -23109.880194 eV Core-core repulsion = 19506.105380 eV Total energy + Delta-G solvation = -3603.774814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29294 -39.91052 -38.58212 -38.01187 -36.40791 -34.52533 -34.29478 -32.21283 -30.56199 -29.69032 -27.63896 -27.34879 -26.03130 -24.37887 -23.11539 -22.35857 -21.50281 -19.84260 -19.22961 -18.21433 -17.85614 -17.01221 -16.79284 -16.42608 -16.31163 -16.15138 -15.82924 -15.66470 -15.53944 -15.27835 -14.84074 -14.53816 -14.31120 -14.20557 -14.02253 -13.53987 -13.31088 -13.09465 -12.96918 -12.68186 -12.62330 -12.49211 -12.35195 -12.17195 -12.12604 -11.43612 -11.05422 -10.81431 -10.65629 -10.14827 -9.86305 -9.78260 -9.02810 -8.43481 -6.14536 0.12812 0.74048 1.33133 1.35217 1.46006 1.50873 2.08884 2.16912 2.38594 2.88655 3.23434 3.47674 3.57030 3.88850 4.00181 4.02889 4.11058 4.29425 4.33784 4.42671 4.53164 4.53592 4.63065 4.64373 4.70419 4.78358 4.81530 4.87983 4.95302 5.00018 5.08534 5.15077 5.40360 5.49045 5.58650 5.62174 5.70937 5.94310 5.96967 6.18044 6.65737 6.95687 7.45595 7.81137 8.76768 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.003582 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.345916 B = 7814.186715 C = 9284.582137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.278 6.278 3 N -0.376 5.376 4 C 0.002 3.998 5 C 0.045 3.955 6 C 0.133 3.867 7 N -0.716 5.716 8 C 0.550 3.450 9 O -0.567 6.567 10 C -0.245 4.245 11 C -0.029 4.029 12 C -0.201 4.201 13 C -0.040 4.040 14 C -0.258 4.258 15 C 0.149 3.851 16 O -0.188 6.188 17 C -0.429 4.429 18 H 0.107 0.893 19 C -0.021 4.021 20 N -0.905 5.905 21 Si 1.021 2.979 22 H -0.254 1.254 23 H -0.274 1.274 24 H -0.254 1.254 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.413 0.587 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.123 0.877 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.961 -17.902 -3.944 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 N -0.145 5.145 4 C -0.146 4.146 5 C -0.083 4.083 6 C 0.008 3.992 7 N -0.372 5.372 8 C 0.340 3.660 9 O -0.445 6.445 10 C -0.250 4.250 11 C -0.047 4.047 12 C -0.219 4.219 13 C -0.058 4.058 14 C -0.278 4.278 15 C 0.094 3.906 16 O -0.091 6.091 17 C -0.505 4.505 18 H 0.124 0.876 19 C -0.221 4.221 20 N -0.540 5.540 21 Si 0.840 3.160 22 H -0.178 1.178 23 H -0.198 1.198 24 H -0.179 1.179 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.130 0.870 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.120 0.880 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.252 0.748 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.141 0.859 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.629 -16.970 -2.976 17.840 hybrid contribution 0.790 0.438 0.136 0.913 sum -3.839 -16.532 -2.840 17.208 Atomic orbital electron populations 1.22826 0.79128 1.03199 1.00881 1.90649 1.22531 1.18071 1.97005 1.67495 1.34645 1.08840 1.03524 1.22865 0.97651 1.02095 0.92000 1.22355 0.97063 0.94343 0.94546 1.21054 0.94054 0.95897 0.88157 1.45450 1.51936 1.12336 1.27500 1.18506 0.79636 0.82357 0.85473 1.90940 1.61566 1.42974 1.49046 1.19256 1.10744 0.93974 1.01014 1.21322 0.94974 0.96460 0.91972 1.21184 1.02597 0.98291 0.99857 1.21440 0.95430 0.91862 0.97060 1.21304 1.06847 1.02071 0.97541 1.20086 0.92347 0.88179 0.89983 1.84178 1.58374 1.19662 1.46875 1.22000 1.28009 0.90400 1.10059 0.87600 1.26747 0.98051 1.03078 0.94204 1.70309 1.38163 1.33624 1.11923 0.84634 0.78221 0.74439 0.78740 1.17803 1.19816 1.17855 0.93573 0.93548 0.87008 0.89248 0.89491 0.93652 0.88019 0.91794 0.92491 0.92478 0.74848 0.82075 0.81812 0.82885 0.85905 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 11.51 113.37 1.30 1.87 16 2 O -0.28 -6.05 10.96 -50.16 -0.55 -6.60 16 3 N -0.38 -8.51 5.14 -537.13 -2.76 -11.28 16 4 C 0.00 0.04 9.77 127.69 1.25 1.29 16 5 C 0.05 0.96 5.63 86.30 0.49 1.45 16 6 C 0.13 3.83 5.47 86.38 0.47 4.30 16 7 N -0.72 -22.08 5.51 -466.29 -2.57 -24.65 16 8 C 0.55 24.73 7.76 86.69 0.67 25.40 16 9 O -0.57 -33.29 15.17 16.88 0.26 -33.04 16 10 C -0.25 -10.52 5.89 -19.99 -0.12 -10.63 16 11 C -0.03 -0.85 9.54 22.52 0.21 -0.63 16 12 C -0.20 -5.23 10.03 22.25 0.22 -5.01 16 13 C -0.04 -1.22 10.03 22.30 0.22 -1.00 16 14 C -0.26 -10.96 9.16 22.36 0.20 -10.76 16 15 C 0.15 7.66 6.66 22.91 0.15 7.81 16 16 O -0.19 -11.98 7.84 0.74 0.01 -11.98 16 17 C -0.43 -25.94 9.49 67.93 0.64 -25.30 16 18 H 0.11 5.73 5.21 -2.91 -0.02 5.71 16 19 C -0.02 -1.27 5.49 84.85 0.47 -0.81 16 20 N -0.90 -59.13 13.67 21.62 0.30 -58.83 16 21 Si 1.02 44.16 29.55 68.60 2.03 46.18 16 22 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.97 6.33 -2.39 -0.02 1.95 16 29 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.79 6.42 -2.39 -0.02 1.78 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.41 8.96 6.50 -92.71 -0.60 8.36 16 36 H 0.16 3.07 6.40 -2.91 -0.02 3.05 16 37 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 39 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 40 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 Total: -1.00 -87.71 341.64 3.37 -84.35 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.46 Total: 27.85 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 6.20 Total: -12.01 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -5.03 Total: -94.76 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -0.29 Total: -51.61 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -87.71 3.37 -84.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880642823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.110 kcal (2) G-P(sol) polarization free energy of solvation -87.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds