Wall clock time and date at job start Fri Apr 10 2020 17:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34367 * 126.76434 * 2 1 4 4 N 1.30868 * 108.19792 * 179.75410 * 3 2 1 5 5 C 1.33628 * 109.77659 * 0.43908 * 4 3 2 6 6 N 1.39888 * 125.60216 * 179.81873 * 5 4 3 7 7 C 1.34776 * 119.99917 * 359.69508 * 6 5 4 8 8 O 1.21583 * 119.99847 * 5.00672 * 7 6 5 9 9 N 1.34776 * 119.99687 * 185.00687 * 7 6 5 10 10 C 1.47079 * 120.88477 * 354.80242 * 9 7 6 11 11 C 1.53239 * 108.52144 * 231.16481 * 10 9 7 12 12 N 1.46903 * 109.33768 * 306.16824 * 11 10 9 13 13 C 1.46898 * 111.00169 * 187.25518 * 12 11 10 14 14 C 1.50700 * 109.47452 * 169.99920 * 13 12 11 15 15 H 1.07999 * 119.99607 * 0.02562 * 14 13 12 16 16 C 1.37871 * 119.99995 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00166 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00049 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46906 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47620 * 119.99686 * 18 16 14 21 21 H 1.48499 * 109.47148 * 239.99857 * 18 16 14 22 22 C 1.46897 * 111.26928 * 63.10202 * 12 11 10 23 23 C 1.47085 * 120.87804 * 174.77823 * 9 7 6 24 24 N 1.31168 * 108.79286 * 359.55388 * 5 4 3 25 25 H 1.09004 * 109.47014 * 269.99832 * 1 2 3 26 26 H 1.08997 * 109.47078 * 29.99975 * 1 2 3 27 27 H 1.09001 * 109.47086 * 150.00064 * 1 2 3 28 28 H 1.07996 * 125.89920 * 0.02562 * 3 2 1 29 29 H 0.96994 * 119.99830 * 179.69422 * 6 5 4 30 30 H 1.08992 * 109.63183 * 111.45524 * 10 9 7 31 31 H 1.09006 * 109.62751 * 350.86627 * 10 9 7 32 32 H 1.08998 * 109.49384 * 186.20771 * 11 10 9 33 33 H 1.09004 * 109.49754 * 66.12317 * 11 10 9 34 34 H 1.09006 * 109.46772 * 289.99767 * 13 12 11 35 35 H 1.09005 * 109.47143 * 49.99410 * 13 12 11 36 36 H 0.97005 * 119.99979 * 180.02562 * 17 16 14 37 37 H 1.09006 * 109.49032 * 56.86075 * 22 12 11 38 38 H 1.09008 * 109.49041 * 176.90515 * 22 12 11 39 39 H 1.08994 * 109.63146 * 9.12315 * 23 9 7 40 40 H 1.09005 * 109.62347 * 248.54541 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2693 1.0764 0.0000 4 7 3.5098 0.6597 0.0053 5 6 3.5381 -0.6762 -0.0008 6 7 4.6925 -1.4664 -0.0013 7 6 5.9078 -0.8838 -0.0015 8 8 6.0026 0.3248 0.0906 9 7 7.0180 -1.6411 -0.1039 10 6 6.9331 -3.1094 -0.1022 11 6 7.9119 -3.6524 0.9444 12 7 9.2517 -3.1079 0.6862 13 6 10.2523 -3.7355 1.5595 14 6 11.6339 -3.3401 1.1057 15 1 11.7563 -2.6875 0.2539 16 6 12.7415 -3.8116 1.7778 17 7 12.5924 -4.6059 2.8154 18 14 14.4541 -3.3221 1.2149 19 1 14.3502 -2.4282 0.0335 20 1 15.1522 -2.6098 2.3151 21 1 15.2214 -4.5394 0.8480 22 6 9.2697 -1.6461 0.8304 23 6 8.3466 -1.0209 -0.2208 24 7 2.3056 -1.1250 -0.0005 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.9475 2.1073 0.0004 29 1 4.6182 -2.4335 -0.0015 30 1 7.2002 -3.4928 -1.0869 31 1 5.9186 -3.4172 0.1509 32 1 7.9434 -4.7402 0.8832 33 1 7.5833 -3.3530 1.9397 34 1 10.0981 -3.4031 2.5861 35 1 10.1497 -4.8196 1.5093 36 1 13.3717 -4.9373 3.2885 37 1 8.9222 -1.3747 1.8273 38 1 10.2861 -1.2791 0.6871 39 1 8.2666 0.0520 -0.0462 40 1 8.7495 -1.2036 -1.2170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603021315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:05 Heat of formation + Delta-G solvation = 105.753826 kcal Electronic energy + Delta-G solvation = -23344.180182 eV Core-core repulsion = 19811.625070 eV Total energy + Delta-G solvation = -3532.555112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.27165 -40.23412 -37.70733 -35.28425 -34.46254 -33.40402 -32.35207 -31.23647 -30.60773 -28.31985 -27.11409 -25.52193 -23.53349 -22.79465 -22.28502 -21.70338 -20.44635 -19.25918 -18.25388 -17.50119 -16.41164 -16.39344 -16.18264 -15.49601 -15.21122 -14.71233 -14.63857 -14.43240 -13.97056 -13.84251 -13.65393 -13.53118 -13.49615 -12.91306 -12.25790 -12.03004 -11.96687 -11.30099 -11.20774 -11.02401 -10.84651 -10.73630 -10.59663 -10.50574 -10.28858 -9.98943 -9.88051 -9.70834 -9.25459 -8.86224 -8.48292 -8.36879 -7.32703 -6.05512 -4.07176 1.39310 1.76024 2.58049 2.68623 3.30589 3.38254 3.42884 3.47830 3.59564 4.16868 4.33420 4.40035 4.72887 4.74294 4.90481 4.98451 5.15764 5.27828 5.31746 5.35048 5.43695 5.64484 5.81581 5.92267 6.03050 6.06691 6.19185 6.37176 6.43026 6.50977 6.57551 6.71634 6.86189 7.22228 7.28880 7.64583 7.75621 8.01192 8.11537 8.13797 8.47973 8.58291 9.00475 9.57531 11.05371 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.048138 B = 0.002736 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.519404 B =10231.705755 C =10568.216334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.386 5.386 3 C 0.267 3.733 4 N -0.516 5.516 5 C 0.474 3.526 6 N -0.641 5.641 7 C 0.707 3.293 8 O -0.538 6.538 9 N -0.619 5.619 10 C 0.115 3.885 11 C 0.040 3.960 12 N -0.535 5.535 13 C 0.193 3.807 14 C -0.508 4.508 15 H 0.065 0.935 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.050 3.950 23 C 0.134 3.866 24 N -0.350 5.350 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.222 0.778 29 H 0.417 0.583 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.028 0.972 34 H -0.009 1.009 35 H 0.032 0.968 36 H 0.261 0.739 37 H 0.026 0.974 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.990 7.283 -6.241 25.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.179 5.179 3 C -0.031 4.031 4 N -0.246 5.246 5 C 0.103 3.897 6 N -0.300 5.300 7 C 0.407 3.593 8 O -0.409 6.409 9 N -0.357 5.357 10 C -0.008 4.008 11 C -0.089 4.089 12 N -0.260 5.260 13 C 0.069 3.931 14 C -0.547 4.547 15 H 0.083 0.917 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.079 4.079 23 C 0.011 3.989 24 N -0.187 5.187 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.238 0.762 29 H 0.257 0.743 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.046 0.954 34 H 0.009 0.991 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.551 7.426 -6.528 25.542 hybrid contribution 0.403 -0.155 0.762 0.876 sum -23.148 7.271 -5.766 24.939 Atomic orbital electron populations 1.21911 0.73638 1.04835 1.03733 1.50113 1.07677 1.03666 1.56418 1.26185 0.85024 0.95709 0.96137 1.70675 1.19567 1.09052 1.25316 1.19967 0.85747 0.87454 0.96513 1.41838 1.01318 1.09275 1.77544 1.15662 0.79570 0.85456 0.78582 1.91026 1.84334 1.11322 1.54260 1.47424 1.05578 1.06371 1.76298 1.21847 0.98560 0.79269 1.01164 1.22381 0.90826 1.00028 0.95701 1.62087 1.03442 1.03836 1.56652 1.19735 0.89290 0.94649 0.89472 1.21180 0.89951 1.29557 1.13983 0.91668 1.24998 0.99477 0.95191 0.94982 1.69970 1.30117 1.33662 1.20029 0.86433 0.84016 0.78312 0.78614 1.19577 1.21119 1.21041 1.22382 1.00281 0.89380 0.95899 1.21819 0.78953 0.98010 1.00070 1.78158 0.99313 1.06883 1.34378 0.90358 0.88879 0.89127 0.76163 0.74291 0.90167 0.91380 0.89908 0.95419 0.99077 0.95035 0.92947 0.95592 0.88286 0.89019 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.37 11.53 59.85 0.69 1.06 16 2 N -0.39 -3.58 4.03 -69.45 -0.28 -3.86 16 3 C 0.27 2.60 12.65 -90.68 -1.15 1.45 16 4 N -0.52 -7.82 9.38 -14.92 -0.14 -7.96 16 5 C 0.47 7.07 8.81 -320.83 -2.83 4.25 16 6 N -0.64 -9.14 5.35 -17.22 -0.09 -9.23 16 7 C 0.71 11.89 8.27 -86.92 -0.72 11.17 16 8 O -0.54 -10.88 14.49 5.29 0.08 -10.80 16 9 N -0.62 -9.70 3.01 -178.19 -0.54 -10.24 16 10 C 0.12 1.54 6.54 -3.60 -0.02 1.52 16 11 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 12 N -0.53 -11.03 4.62 -235.76 -1.09 -12.12 16 13 C 0.19 4.90 4.72 -4.98 -0.02 4.87 16 14 C -0.51 -13.91 8.41 -34.44 -0.29 -14.20 16 15 H 0.07 1.76 7.13 -52.49 -0.37 1.38 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 18 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.05 0.96 5.46 -3.71 -0.02 0.94 16 23 C 0.13 2.22 6.61 -3.60 -0.02 2.20 16 24 N -0.35 -4.55 12.72 30.04 0.38 -4.17 16 25 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.22 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.42 4.72 6.36 -40.82 -0.26 4.46 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.70 5.74 -51.93 -0.30 0.40 16 32 H 0.08 1.31 7.99 -51.93 -0.41 0.89 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 35 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.10 2.02 6.67 -51.92 -0.35 1.68 16 39 H 0.09 1.54 7.04 -51.93 -0.37 1.17 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -37.00 332.19 -10.87 -47.87 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.41 Total: -0.57 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: -4.50 Total: 15.35 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -1.02 Total: -73.24 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -37.00 -10.87 -47.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603021315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.626 kcal (2) G-P(sol) polarization free energy of solvation -37.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds