Wall clock time and date at job start Fri Apr 10 2020 17:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34367 * 126.76434 * 2 1 4 4 N 1.30868 * 108.19792 * 179.75410 * 3 2 1 5 5 C 1.33628 * 109.77659 * 0.43908 * 4 3 2 6 6 N 1.39888 * 125.60216 * 179.81873 * 5 4 3 7 7 C 1.34776 * 119.99917 * 359.69508 * 6 5 4 8 8 O 1.21583 * 119.99847 * 5.00672 * 7 6 5 9 9 N 1.34776 * 119.99687 * 185.00687 * 7 6 5 10 10 C 1.47079 * 120.88477 * 354.80242 * 9 7 6 11 11 C 1.53239 * 108.52144 * 231.16481 * 10 9 7 12 12 N 1.46903 * 109.33768 * 306.16824 * 11 10 9 13 13 C 1.46898 * 111.00169 * 187.25518 * 12 11 10 14 14 C 1.50700 * 109.47452 * 169.99920 * 13 12 11 15 15 H 1.07999 * 119.99607 * 0.02562 * 14 13 12 16 16 C 1.37871 * 119.99995 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00166 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00049 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46906 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47620 * 119.99686 * 18 16 14 21 21 H 1.48499 * 109.47148 * 239.99857 * 18 16 14 22 22 C 1.46897 * 111.26928 * 63.10202 * 12 11 10 23 23 C 1.47085 * 120.87804 * 174.77823 * 9 7 6 24 24 N 1.31168 * 108.79286 * 359.55388 * 5 4 3 25 25 H 1.09004 * 109.47014 * 269.99832 * 1 2 3 26 26 H 1.08997 * 109.47078 * 29.99975 * 1 2 3 27 27 H 1.09001 * 109.47086 * 150.00064 * 1 2 3 28 28 H 1.07996 * 125.89920 * 0.02562 * 3 2 1 29 29 H 0.96994 * 119.99830 * 179.69422 * 6 5 4 30 30 H 1.08992 * 109.63183 * 111.45524 * 10 9 7 31 31 H 1.09006 * 109.62751 * 350.86627 * 10 9 7 32 32 H 1.08998 * 109.49384 * 186.20771 * 11 10 9 33 33 H 1.09004 * 109.49754 * 66.12317 * 11 10 9 34 34 H 1.09006 * 109.46772 * 289.99767 * 13 12 11 35 35 H 1.09005 * 109.47143 * 49.99410 * 13 12 11 36 36 H 0.97005 * 119.99979 * 180.02562 * 17 16 14 37 37 H 1.09006 * 109.49032 * 56.86075 * 22 12 11 38 38 H 1.09008 * 109.49041 * 176.90515 * 22 12 11 39 39 H 1.08994 * 109.63146 * 9.12315 * 23 9 7 40 40 H 1.09005 * 109.62347 * 248.54541 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2693 1.0764 0.0000 4 7 3.5098 0.6597 0.0053 5 6 3.5381 -0.6762 -0.0008 6 7 4.6925 -1.4664 -0.0013 7 6 5.9078 -0.8838 -0.0015 8 8 6.0026 0.3248 0.0906 9 7 7.0180 -1.6411 -0.1039 10 6 6.9331 -3.1094 -0.1022 11 6 7.9119 -3.6524 0.9444 12 7 9.2517 -3.1079 0.6862 13 6 10.2523 -3.7355 1.5595 14 6 11.6339 -3.3401 1.1057 15 1 11.7563 -2.6875 0.2539 16 6 12.7415 -3.8116 1.7778 17 7 12.5924 -4.6059 2.8154 18 14 14.4541 -3.3221 1.2149 19 1 14.3502 -2.4282 0.0335 20 1 15.1522 -2.6098 2.3151 21 1 15.2214 -4.5394 0.8480 22 6 9.2697 -1.6461 0.8304 23 6 8.3466 -1.0209 -0.2208 24 7 2.3056 -1.1250 -0.0005 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.9475 2.1073 0.0004 29 1 4.6182 -2.4335 -0.0015 30 1 7.2002 -3.4928 -1.0869 31 1 5.9186 -3.4172 0.1509 32 1 7.9434 -4.7402 0.8832 33 1 7.5833 -3.3530 1.9397 34 1 10.0981 -3.4031 2.5861 35 1 10.1497 -4.8196 1.5093 36 1 13.3717 -4.9373 3.2885 37 1 8.9222 -1.3747 1.8273 38 1 10.2861 -1.2791 0.6871 39 1 8.2666 0.0520 -0.0462 40 1 8.7495 -1.2036 -1.2170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603021315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:04 Heat of formation + Delta-G solvation = 80.826108 kcal Electronic energy + Delta-G solvation = -23345.261129 eV Core-core repulsion = 19811.625070 eV Total energy + Delta-G solvation = -3533.636059 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.13687 -41.49344 -39.17754 -36.35565 -36.03184 -34.52258 -34.06735 -32.29465 -31.81932 -30.01153 -27.85813 -27.16439 -24.90386 -24.16717 -23.38922 -23.00979 -21.76552 -20.48292 -19.40545 -18.61231 -18.34982 -17.30806 -17.14204 -16.82547 -16.47100 -16.24903 -15.99367 -15.60447 -15.42858 -15.29324 -15.02117 -14.64897 -14.10967 -13.95644 -13.91196 -13.56957 -13.10081 -12.75307 -12.67822 -12.60122 -12.38045 -12.32830 -12.15622 -12.00699 -11.75628 -11.50097 -11.24868 -10.85785 -10.77602 -10.61418 -9.96827 -9.57491 -9.05534 -8.19918 -6.29443 0.56809 0.85726 1.42989 1.43868 1.57228 1.65676 1.73993 2.32764 2.41600 2.53187 3.12435 3.21740 3.46655 3.78160 3.91583 4.04412 4.10022 4.25372 4.34080 4.42762 4.49753 4.53076 4.61283 4.70624 4.78097 4.83743 4.95345 5.01583 5.15980 5.21650 5.24496 5.36204 5.52839 5.60339 5.67187 5.97996 6.03957 6.23984 6.52899 6.59081 6.86541 7.17594 7.37569 7.40400 8.91470 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.048138 B = 0.002736 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.519404 B =10231.705755 C =10568.216334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.378 5.378 3 C 0.277 3.723 4 N -0.574 5.574 5 C 0.447 3.553 6 N -0.632 5.632 7 C 0.709 3.291 8 O -0.576 6.576 9 N -0.619 5.619 10 C 0.123 3.877 11 C 0.037 3.963 12 N -0.537 5.537 13 C 0.208 3.792 14 C -0.521 4.521 15 H 0.067 0.933 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.261 1.261 20 H -0.282 1.282 21 H -0.279 1.279 22 C 0.056 3.944 23 C 0.146 3.854 24 N -0.364 5.364 25 H 0.092 0.908 26 H 0.131 0.869 27 H 0.091 0.909 28 H 0.271 0.729 29 H 0.428 0.572 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.017 0.983 34 H -0.042 1.042 35 H 0.012 0.988 36 H 0.264 0.736 37 H 0.008 0.992 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.845 7.998 -7.665 28.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.170 5.170 3 C -0.020 4.020 4 N -0.306 5.306 5 C 0.077 3.923 6 N -0.291 5.291 7 C 0.409 3.591 8 O -0.450 6.450 9 N -0.357 5.357 10 C 0.000 4.000 11 C -0.092 4.092 12 N -0.261 5.261 13 C 0.082 3.918 14 C -0.559 4.559 15 H 0.085 0.915 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.794 3.206 19 H -0.185 1.185 20 H -0.208 1.208 21 H -0.205 1.205 22 C -0.073 4.073 23 C 0.023 3.977 24 N -0.202 5.202 25 H 0.111 0.889 26 H 0.150 0.850 27 H 0.110 0.890 28 H 0.286 0.714 29 H 0.270 0.730 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.035 0.965 34 H -0.025 1.025 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.027 0.973 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.494 8.114 -7.969 27.916 hybrid contribution 0.767 -0.358 1.242 1.503 sum -24.727 7.756 -6.727 26.774 Atomic orbital electron populations 1.22402 0.70339 1.06859 1.05317 1.50466 1.09256 1.02596 1.54713 1.27005 0.83710 0.97408 0.93835 1.70586 1.22803 1.09568 1.27607 1.20168 0.86131 0.87827 0.98191 1.41569 1.00686 1.09802 1.77076 1.15710 0.80217 0.85010 0.78141 1.90991 1.85035 1.13058 1.55957 1.47417 1.04999 1.07214 1.76062 1.21945 0.99540 0.77704 1.00778 1.22526 0.89376 1.00789 0.96503 1.62013 1.04675 1.04394 1.55051 1.19387 0.90382 0.93587 0.88452 1.21503 0.91064 1.29384 1.13956 0.91461 1.25910 1.03780 0.95081 0.94980 1.70094 1.31400 1.34848 1.21266 0.85335 0.78743 0.78158 0.78393 1.18489 1.20777 1.20462 1.22304 1.00243 0.88705 0.96069 1.21604 0.79004 0.97605 0.99459 1.78043 0.98999 1.09025 1.34122 0.88933 0.85039 0.88978 0.71388 0.72961 0.88496 0.87721 0.88840 0.96469 1.02477 0.96983 0.92753 0.97337 0.89772 0.89288 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 11.53 127.77 1.47 1.83 16 2 N -0.38 -6.08 4.03 -373.63 -1.51 -7.59 16 3 C 0.28 4.75 12.65 180.37 2.28 7.03 16 4 N -0.57 -16.95 9.38 -201.12 -1.89 -18.84 16 5 C 0.45 13.04 8.81 260.79 2.30 15.34 16 6 N -0.63 -17.51 5.35 -326.66 -1.75 -19.25 16 7 C 0.71 23.54 8.27 179.05 1.48 25.02 16 8 O -0.58 -23.50 14.49 -3.98 -0.06 -23.56 16 9 N -0.62 -18.89 3.01 -835.95 -2.52 -21.41 16 10 C 0.12 3.07 6.54 86.35 0.56 3.63 16 11 C 0.04 1.23 5.62 86.38 0.49 1.71 16 12 N -0.54 -22.42 4.62 -899.80 -4.16 -26.57 16 13 C 0.21 10.91 4.72 85.56 0.40 11.31 16 14 C -0.52 -29.02 8.41 25.60 0.22 -28.80 16 15 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 16 C 0.00 0.02 5.46 84.65 0.46 0.48 16 17 N -0.94 -56.11 13.29 21.45 0.28 -55.83 16 18 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 19 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 C 0.06 2.21 5.46 86.38 0.47 2.68 16 23 C 0.15 4.82 6.61 86.35 0.57 5.39 16 24 N -0.36 -8.97 12.72 -58.87 -0.75 -9.71 16 25 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.09 0.39 8.14 -2.39 -0.02 0.38 16 28 H 0.27 1.32 8.06 -2.91 -0.02 1.29 16 29 H 0.43 9.05 6.36 -92.71 -0.59 8.46 16 30 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.10 1.87 5.74 -2.38 -0.01 1.86 16 32 H 0.09 2.89 7.99 -2.39 -0.02 2.87 16 33 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 34 H -0.04 -2.47 8.12 -2.38 -0.02 -2.49 16 35 H 0.01 0.67 7.97 -2.38 -0.02 0.65 16 36 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 37 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 38 H 0.08 3.54 6.67 -2.38 -0.02 3.52 16 39 H 0.09 3.02 7.04 -2.39 -0.02 3.00 16 40 H 0.09 2.66 8.14 -2.38 -0.02 2.65 16 Total: -1.00 -83.41 332.19 0.87 -82.54 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.48 Total: 8.47 kcal Atomic # 6 Polarization: 34.93 SS G_CDS: 10.71 Total: 45.63 kcal Atomic # 7 Polarization: -146.92 SS G_CDS: -12.28 Total: -159.20 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.06 Total: -23.56 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -83.41 0.87 -82.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603021315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.364 kcal (2) G-P(sol) polarization free energy of solvation -83.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds