Wall clock time and date at job start Fri Apr 10 2020 17:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 119.99966 * 2 1 4 4 H 1.48508 * 109.46741 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47198 * 300.00304 * 3 2 1 6 6 H 1.48495 * 109.47340 * 60.00665 * 3 2 1 7 7 C 1.38816 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00062 * 160.26871 * 7 2 1 9 9 N 1.36941 * 119.99802 * 340.25869 * 7 2 1 10 10 C 1.46499 * 120.00205 * 320.57183 * 9 7 2 11 11 N 1.46497 * 109.46884 * 269.99507 * 10 9 7 12 12 C 1.46830 * 124.36019 * 90.00489 * 11 10 9 13 13 C 1.54597 * 105.57109 * 163.05973 * 12 11 10 14 14 C 1.54336 * 101.54260 * 24.98049 * 13 12 11 15 15 C 1.52581 * 110.10543 * 94.71812 * 14 13 12 16 16 C 1.53202 * 109.19633 * 177.35056 * 15 14 13 17 17 O 1.42911 * 109.34508 * 303.34292 * 16 15 14 18 18 C 1.42923 * 114.22202 * 61.60880 * 17 16 15 19 19 C 1.52583 * 110.08286 * 216.66297 * 14 13 12 20 20 C 1.34574 * 124.36953 * 270.02514 * 11 10 9 21 21 O 1.21280 * 125.02806 * 0.69768 * 20 11 10 22 22 C 1.46496 * 119.99633 * 140.57046 * 9 7 2 23 23 C 1.53008 * 117.49945 * 3.28429 * 22 9 7 24 24 C 1.52995 * 59.99991 * 252.51375 * 23 22 9 25 25 H 0.97008 * 119.99942 * 355.01018 * 1 2 3 26 26 H 1.08994 * 109.46822 * 149.99794 * 10 9 7 27 27 H 1.08997 * 109.47068 * 29.99707 * 10 9 7 28 28 H 1.09007 * 110.23938 * 282.10572 * 12 11 10 29 29 H 1.08998 * 110.24206 * 44.01032 * 12 11 10 30 30 H 1.08998 * 110.98613 * 143.09380 * 13 12 11 31 31 H 1.08991 * 110.98803 * 266.91486 * 13 12 11 32 32 H 1.08999 * 109.51567 * 297.26172 * 15 14 13 33 33 H 1.08998 * 109.51910 * 57.43874 * 15 14 13 34 34 H 1.08994 * 109.49570 * 183.38342 * 16 15 14 35 35 H 1.09000 * 109.51936 * 63.31754 * 16 15 14 36 36 H 1.08998 * 109.49275 * 178.42495 * 18 17 16 37 37 H 1.09001 * 109.49142 * 58.34176 * 18 17 16 38 38 H 1.09000 * 109.51763 * 302.53562 * 19 14 13 39 39 H 1.09002 * 109.51503 * 62.65177 * 19 14 13 40 40 H 1.08998 * 115.55371 * 148.99790 * 22 9 7 41 41 H 1.09001 * 117.49761 * 0.02562 * 23 22 9 42 42 H 1.08999 * 117.49411 * 145.01823 * 23 22 9 43 43 H 1.09008 * 117.49633 * 252.50762 * 24 23 22 44 44 H 1.09002 * 117.52245 * 107.48352 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0427 -1.2296 -0.3163 9 7 1.3858 -2.3534 0.3995 10 6 0.4637 -2.3292 1.5377 11 7 1.2059 -2.5929 2.7730 12 6 1.8234 -1.5540 3.6067 13 6 2.0951 -2.2251 4.9726 14 6 2.1960 -3.7120 4.5716 15 6 3.6549 -4.0956 4.3423 16 6 3.7369 -5.5890 4.0106 17 8 3.1354 -6.3421 5.0658 18 6 1.7485 -6.0627 5.2688 19 6 1.5791 -4.5902 5.6562 20 6 1.4098 -3.8187 3.2897 21 8 1.0191 -4.8557 2.7969 22 6 1.6398 -3.6093 -0.3107 23 6 2.6704 -3.5855 -1.4414 24 6 1.1801 -3.7026 -1.7671 25 1 -0.4850 0.8369 0.0731 26 1 -0.3005 -3.0944 1.4025 27 1 -0.0101 -1.3496 1.6006 28 1 2.7587 -1.2177 3.1590 29 1 1.1406 -0.7132 3.7288 30 1 3.0322 -1.8707 5.4021 31 1 1.2655 -2.0610 5.6601 32 1 4.0578 -3.5155 3.5121 33 1 4.2313 -3.8908 5.2444 34 1 4.7816 -5.8813 3.9050 35 1 3.2085 -5.7844 3.0775 36 1 1.3632 -6.6958 6.0681 37 1 1.1989 -6.2624 4.3490 38 1 2.0813 -4.4033 6.6054 39 1 0.5186 -4.3580 5.7533 40 1 1.5780 -4.5130 0.2954 41 1 3.1597 -2.6355 -1.6564 42 1 3.2870 -4.4737 -1.5790 43 1 0.8163 -4.6680 -2.1191 44 1 0.6883 -2.8299 -2.1966 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777526575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:16 Heat of formation + Delta-G solvation = -47.230105 kcal Electronic energy + Delta-G solvation = -25846.832200 eV Core-core repulsion = 22378.890798 eV Total energy + Delta-G solvation = -3467.941401 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.12056 -39.34476 -38.51270 -37.33118 -35.64619 -34.41271 -32.31797 -32.10185 -30.20347 -27.48986 -26.79394 -25.28192 -24.63483 -23.11190 -22.78726 -22.27282 -21.48680 -19.65339 -18.55920 -17.56145 -17.28169 -17.04418 -16.92105 -16.80327 -16.37497 -15.84393 -15.62938 -15.61152 -14.90873 -14.80056 -14.53809 -14.11808 -13.63417 -13.59650 -13.34755 -13.25676 -13.23281 -12.84808 -12.78516 -12.69204 -12.48331 -12.30105 -12.16648 -12.05382 -11.87518 -11.53739 -11.50063 -11.41365 -11.07150 -10.66083 -10.57001 -10.08122 -9.56411 -8.65662 -7.94641 -5.62094 1.41913 1.47746 1.56946 1.72597 2.33113 2.47893 2.97962 3.09144 3.32081 3.33923 3.49590 3.53153 3.69606 4.04485 4.07405 4.10330 4.21547 4.35333 4.40627 4.42758 4.43619 4.55712 4.59533 4.68395 4.72055 4.78612 4.83021 4.83821 4.90262 4.95609 4.99337 5.06303 5.08664 5.15581 5.23194 5.25591 5.27537 5.44638 5.62889 5.87562 6.26065 6.31566 6.55684 7.02979 7.39382 7.65918 8.25668 9.03337 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.005978 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.725688 B = 4682.922481 C = 5437.332888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.021 4.021 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.264 4.264 8 H 0.056 0.944 9 N -0.556 5.556 10 C 0.375 3.625 11 N -0.615 5.615 12 C 0.100 3.900 13 C -0.108 4.108 14 C -0.094 4.094 15 C -0.124 4.124 16 C 0.058 3.942 17 O -0.392 6.392 18 C 0.047 3.953 19 C -0.123 4.123 20 C 0.511 3.489 21 O -0.576 6.576 22 C 0.097 3.903 23 C -0.175 4.175 24 C -0.210 4.210 25 H 0.257 0.743 26 H 0.034 0.966 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.027 0.973 36 H 0.110 0.890 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.771 -4.565 12.697 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.219 4.219 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.394 4.394 8 H 0.073 0.927 9 N -0.275 5.275 10 C 0.168 3.832 11 N -0.350 5.350 12 C -0.024 4.024 13 C -0.145 4.145 14 C -0.097 4.097 15 C -0.162 4.162 16 C -0.019 4.019 17 O -0.312 6.312 18 C -0.029 4.029 19 C -0.160 4.160 20 C 0.299 3.701 21 O -0.457 6.457 22 C -0.011 4.011 23 C -0.213 4.213 24 C -0.251 4.251 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.046 0.954 36 H 0.128 0.872 37 H 0.064 0.936 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.475 -5.021 12.383 14.440 hybrid contribution -0.239 1.203 -1.013 1.591 sum 5.235 -3.818 11.370 13.087 Atomic orbital electron populations 1.70137 1.06762 1.27019 1.51838 1.25876 0.95598 1.01446 0.98988 0.85403 0.78884 0.80007 0.77274 1.19328 1.22214 1.20301 1.19144 0.93174 0.85717 1.41366 0.92654 1.44017 1.50863 1.03648 1.28926 1.20679 0.86775 1.00394 0.75359 1.50045 1.52945 1.07415 1.24622 1.22138 0.98100 0.91329 0.90806 1.22783 1.05304 0.90982 0.95434 1.21149 0.96512 0.98435 0.93648 1.21967 0.93603 0.96670 1.03968 1.22621 0.98857 0.90937 0.89442 1.87813 1.24367 1.64539 1.54431 1.22838 0.82276 0.96156 1.01655 1.21966 1.01611 0.94469 0.98004 1.21240 0.78863 0.83230 0.86748 1.90561 1.55235 1.32255 1.67658 1.21426 1.02544 0.90058 0.87040 1.22999 0.91863 1.02334 1.04085 1.23211 0.97432 1.01105 1.03315 0.93395 0.94755 0.88583 0.92255 0.91036 0.86561 0.88375 0.91507 0.87293 0.87147 0.95427 0.87213 0.93593 0.87778 0.90649 0.89555 0.89896 0.87797 0.88615 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.83 11.50 21.65 0.25 -49.58 16 2 C -0.02 -1.07 4.98 84.86 0.42 -0.64 16 3 Si 0.96 41.27 29.60 68.60 2.03 43.30 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.30 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.26 -13.64 8.47 84.03 0.71 -12.93 16 8 H 0.06 2.92 6.74 -2.91 -0.02 2.90 16 9 N -0.56 -27.48 2.99 -689.69 -2.06 -29.54 16 10 C 0.38 17.77 6.13 170.96 1.05 18.81 16 11 N -0.61 -24.08 3.18 -829.82 -2.64 -26.72 16 12 C 0.10 3.12 7.35 86.86 0.64 3.76 16 13 C -0.11 -2.32 6.22 31.59 0.20 -2.13 16 14 C -0.09 -2.48 0.55 -52.74 -0.03 -2.51 16 15 C -0.12 -3.04 4.81 30.52 0.15 -2.90 16 16 C 0.06 1.60 6.60 72.05 0.48 2.08 16 17 O -0.39 -11.10 10.75 -148.98 -1.60 -12.70 16 18 C 0.05 1.24 6.59 72.05 0.47 1.72 16 19 C -0.12 -2.78 4.81 30.52 0.15 -2.63 16 20 C 0.51 18.98 6.34 87.71 0.56 19.54 16 21 O -0.58 -25.09 13.40 -3.03 -0.04 -25.13 16 22 C 0.10 4.47 6.56 45.00 0.30 4.77 16 23 C -0.17 -7.10 9.80 30.60 0.30 -6.80 16 24 C -0.21 -9.00 10.36 30.59 0.32 -8.68 16 25 H 0.26 13.42 8.32 -92.70 -0.77 12.65 16 26 H 0.03 1.73 7.87 -2.39 -0.02 1.71 16 27 H 0.10 4.93 5.59 -2.39 -0.01 4.92 16 28 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.12 1.84 7.87 -2.39 -0.02 1.82 16 31 H 0.10 1.78 7.89 -2.39 -0.02 1.76 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.11 2.02 8.13 -2.39 -0.02 2.00 16 34 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.03 0.95 6.79 -2.39 -0.02 0.93 16 36 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.05 1.53 5.88 -2.39 -0.01 1.51 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.09 4.08 7.57 -2.39 -0.02 4.06 16 41 H 0.08 3.61 6.46 -2.39 -0.02 3.59 16 42 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 43 H 0.10 3.57 8.14 -2.38 -0.02 3.55 16 44 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -63.04 342.86 2.62 -60.42 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.98 Total: 28.50 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 5.70 Total: 11.45 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -4.45 Total: -105.84 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.64 Total: -37.83 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -63.04 2.62 -60.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777526575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.187 kcal (2) G-P(sol) polarization free energy of solvation -63.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds