Wall clock time and date at job start Fri Apr 10 2020 17:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 5 5 C 1.34784 * 119.99971 * 84.99732 * 4 2 1 6 6 O 1.21583 * 119.99855 * 359.72712 * 5 4 2 7 7 N 1.34771 * 119.99547 * 179.97438 * 5 4 2 8 8 C 1.46506 * 119.99515 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47042 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47303 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99822 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00335 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99773 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00296 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47057 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47025 * 119.99570 * 14 12 10 17 17 H 1.48495 * 109.47216 * 239.99723 * 14 12 10 18 18 C 1.50691 * 109.47283 * 120.00139 * 2 1 3 19 19 N 1.31071 * 126.66448 * 75.02676 * 18 2 1 20 20 N 1.28830 * 107.99651 * 179.97438 * 19 18 2 21 21 N 1.28742 * 109.39748 * 359.97438 * 20 19 18 22 22 N 1.29012 * 108.80436 * 359.74700 * 21 20 19 23 23 C 1.46509 * 126.43342 * 180.24735 * 22 21 20 24 24 C 1.52992 * 117.50044 * 8.92540 * 23 22 21 25 25 C 1.53001 * 117.49883 * 300.26193 * 23 22 21 26 26 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 28 28 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 29 29 H 0.96999 * 119.99984 * 264.99579 * 4 2 1 30 30 H 0.96999 * 120.00409 * 0.02562 * 7 5 4 31 31 H 1.08996 * 109.47564 * 300.00635 * 8 7 5 32 32 H 1.09000 * 109.46872 * 60.00432 * 8 7 5 33 33 H 1.08996 * 109.47407 * 300.00667 * 9 8 7 34 34 H 1.09000 * 109.46986 * 60.00438 * 9 8 7 35 35 H 0.97005 * 120.00032 * 180.02562 * 13 12 10 36 36 H 1.09004 * 115.54676 * 154.59685 * 23 22 21 37 37 H 1.09004 * 117.49923 * 359.97438 * 24 23 22 38 38 H 1.09002 * 117.50127 * 145.02008 * 24 23 22 39 39 H 1.08993 * 117.49663 * 214.98138 * 25 23 22 40 40 H 1.09005 * 117.49702 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8530 1.1604 -2.4129 7 7 2.5966 -0.6533 -3.4575 8 6 2.7359 0.0776 -4.7196 9 6 3.2604 -0.8686 -5.8016 10 6 3.4044 -0.1168 -7.0996 11 1 3.1478 0.9312 -7.1480 12 6 3.8635 -0.7667 -8.2256 13 7 4.1764 -2.0427 -8.1665 14 14 4.0426 0.1654 -9.8344 15 1 3.6285 1.5778 -9.6370 16 1 5.4595 0.1217 -10.2767 17 1 3.1816 -0.4624 -10.8687 18 6 2.0323 -0.7104 1.2304 19 7 2.0371 -2.0042 1.4399 20 7 2.5449 -2.2169 2.6047 21 7 2.8648 -1.0923 3.1435 22 7 2.5695 -0.1400 2.3248 23 6 2.7762 1.2935 2.5464 24 6 3.5886 1.7085 3.7746 25 6 2.0743 1.9311 3.7471 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 2.2490 -1.6317 -1.1527 30 1 2.8273 -1.5944 -3.4140 31 1 1.7651 0.4709 -5.0208 32 1 3.4365 0.9020 -4.5866 33 1 4.2312 -1.2623 -5.5005 34 1 2.5595 -1.6927 -5.9344 35 1 4.4998 -2.5000 -8.9586 36 1 2.8814 1.8980 1.6455 37 1 3.9690 0.9151 4.4180 38 1 4.2280 2.5863 3.6819 39 1 1.7183 2.9552 3.6364 40 1 1.4585 1.2842 4.3720 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790478017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:20 Heat of formation + Delta-G solvation = 84.211318 kcal Electronic energy + Delta-G solvation = -22911.408221 eV Core-core repulsion = 19377.918955 eV Total energy + Delta-G solvation = -3533.489266 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.41942 -41.13890 -38.90462 -37.53316 -36.33088 -34.84533 -34.79005 -33.54571 -31.81799 -30.55220 -26.83130 -26.43600 -25.85500 -23.79728 -23.37420 -22.77375 -22.17495 -21.75050 -19.81525 -18.79390 -18.41872 -18.14819 -17.73369 -16.66532 -16.49941 -16.20749 -16.18546 -15.58559 -15.13632 -14.94533 -14.60496 -14.45845 -14.26911 -14.01362 -13.50619 -13.28977 -13.18918 -13.13636 -12.94662 -12.78269 -12.58633 -12.48763 -12.26003 -12.19886 -11.73881 -11.66766 -11.60702 -11.47803 -11.21960 -11.00779 -10.60024 -10.47959 -9.83215 -8.22256 -6.32418 -0.04904 0.70746 0.94141 1.42860 1.43800 1.56604 1.67887 2.09036 2.42559 2.46842 2.57534 3.06883 3.13045 3.24899 3.42985 3.59342 3.70317 3.94084 4.02904 4.14630 4.35969 4.48022 4.56615 4.57939 4.63307 4.67514 4.75239 4.90543 4.90721 5.05823 5.09226 5.16968 5.29019 5.32716 5.52204 5.62241 5.79495 5.93273 6.18711 6.81897 7.00478 7.36160 7.37114 7.50950 8.89954 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.002585 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.074051 B =10827.425887 C =11104.761323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.256 3.744 3 H 0.122 0.878 4 N -0.732 5.732 5 C 0.709 3.291 6 O -0.623 6.623 7 N -0.733 5.733 8 C 0.162 3.838 9 C 0.021 3.979 10 C -0.542 4.542 11 H 0.062 0.938 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.965 3.035 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.183 3.817 19 N -0.312 5.312 20 N -0.104 5.104 21 N -0.098 5.098 22 N -0.259 5.259 23 C 0.011 3.989 24 C -0.148 4.148 25 C -0.143 4.143 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.411 0.589 30 H 0.406 0.594 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.265 0.735 36 H 0.183 0.817 37 H 0.102 0.898 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 8.774 24.778 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.147 3.853 3 H 0.139 0.861 4 N -0.390 5.390 5 C 0.409 3.591 6 O -0.504 6.504 7 N -0.387 5.387 8 C 0.038 3.962 9 C -0.017 4.017 10 C -0.581 4.581 11 H 0.080 0.920 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.790 3.210 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.204 1.204 18 C -0.096 4.096 19 N -0.162 5.162 20 N -0.097 5.097 21 N -0.084 5.084 22 N -0.060 5.060 23 C -0.091 4.091 24 C -0.185 4.185 25 C -0.181 4.181 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.247 0.753 30 H 0.241 0.759 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.200 0.800 37 H 0.120 0.880 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.803 8.519 25.389 27.208 hybrid contribution 0.399 -0.307 -1.333 1.425 sum -4.404 8.211 24.056 25.798 Atomic orbital electron populations 1.22173 0.91161 1.03753 1.04220 1.19082 0.95671 0.95011 0.75533 0.86077 1.44941 1.72062 1.14371 1.07580 1.15874 0.78085 0.84627 0.80508 1.90869 1.58747 1.15633 1.85171 1.45271 1.69761 1.14542 1.09118 1.21106 0.99585 0.94505 0.81026 1.19151 0.95463 0.94592 0.92459 1.21503 1.44207 0.97050 0.95320 0.91968 1.25891 0.94800 0.95780 1.02904 1.70076 1.45367 1.10713 1.30707 0.85389 0.77825 0.79047 0.78744 1.18658 1.20414 1.20395 1.26099 0.99643 0.89963 0.93848 1.74906 1.18308 1.12594 1.10367 1.78631 1.12914 1.16151 1.01988 1.78760 1.18839 0.92264 1.18492 1.48125 1.37115 1.09956 1.10794 1.23139 1.13361 0.73004 0.99562 1.23586 0.95521 1.04506 0.94912 1.23683 0.95620 1.03745 0.95065 0.91518 0.89141 0.90709 0.75335 0.75943 0.93238 0.93328 0.97548 0.97428 0.92637 0.80009 0.87981 0.83671 0.83144 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.47 71.98 0.68 -1.95 16 2 C 0.26 4.96 2.96 44.24 0.13 5.09 16 3 H 0.12 2.13 6.42 -2.38 -0.02 2.12 16 4 N -0.73 -17.45 5.07 -461.42 -2.34 -19.79 16 5 C 0.71 22.35 8.53 179.05 1.53 23.88 16 6 O -0.62 -23.15 16.01 -3.98 -0.06 -23.21 16 7 N -0.73 -24.69 5.56 -478.53 -2.66 -27.35 16 8 C 0.16 6.71 5.61 86.38 0.48 7.19 16 9 C 0.02 1.04 5.09 29.85 0.15 1.19 16 10 C -0.54 -29.82 9.11 25.60 0.23 -29.59 16 11 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 12 C 0.00 0.26 5.46 84.65 0.46 0.72 16 13 N -0.93 -54.47 13.29 21.45 0.28 -54.18 16 14 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 15 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 C 0.18 3.83 6.91 138.13 0.95 4.78 16 19 N -0.31 -8.16 12.09 -50.46 -0.61 -8.77 16 20 N -0.10 -2.91 13.43 37.01 0.50 -2.41 16 21 N -0.10 -2.31 12.69 37.02 0.47 -1.84 16 22 N -0.26 -4.75 3.67 -317.82 -1.17 -5.92 16 23 C 0.01 0.10 6.58 44.99 0.30 0.40 16 24 C -0.15 -0.93 10.16 30.62 0.31 -0.62 16 25 C -0.14 -0.71 10.46 30.62 0.32 -0.39 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.41 9.12 8.39 -92.71 -0.78 8.34 16 30 H 0.41 12.10 8.49 -92.71 -0.79 11.31 16 31 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 36 H 0.18 1.04 7.23 -2.38 -0.02 1.02 16 37 H 0.10 1.00 7.85 -2.38 -0.02 0.99 16 38 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -72.23 348.85 1.51 -70.72 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -0.48 Total: 16.80 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 5.55 Total: 10.71 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -5.53 Total: -120.26 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.06 Total: -23.21 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -72.23 1.51 -70.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790478017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.933 kcal (2) G-P(sol) polarization free energy of solvation -72.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds