Wall clock time and date at job start Fri Apr 10 2020 17:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34719 * 117.00054 * 2 1 4 4 O 1.21477 * 120.00130 * 0.02562 * 3 2 1 5 5 C 1.47754 * 119.99890 * 180.02562 * 3 2 1 6 6 N 1.34577 * 126.05649 * 0.02820 * 5 3 2 7 7 C 1.30852 * 107.27395 * 180.02562 * 6 5 3 8 8 N 1.34607 * 107.63225 * 359.97438 * 7 6 5 9 9 C 1.46505 * 125.74324 * 179.97438 * 8 7 6 10 10 N 1.46904 * 109.46933 * 95.00175 * 9 8 7 11 11 C 1.46839 * 111.00343 * 45.78685 * 10 9 8 12 12 C 1.53045 * 109.52533 * 185.83818 * 11 10 9 13 13 C 1.53117 * 109.27458 * 300.82153 * 12 11 10 14 14 C 1.53120 * 109.16118 * 57.65700 * 13 12 11 15 15 H 1.08996 * 109.53617 * 62.30295 * 14 13 12 16 16 C 1.50697 * 109.50110 * 182.40172 * 14 13 12 17 17 H 1.08001 * 119.99915 * 119.80300 * 16 14 13 18 18 C 1.37876 * 120.00034 * 299.79789 * 16 14 13 19 19 N 1.31517 * 119.99863 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00258 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47438 * 59.99720 * 20 18 16 22 22 H 1.48505 * 109.47188 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47007 * 299.99841 * 20 18 16 24 24 C 1.46848 * 110.99932 * 170.00100 * 10 9 8 25 25 N 1.28849 * 108.50919 * 359.73062 * 8 7 6 26 26 H 1.09002 * 109.47379 * 59.99614 * 1 2 3 27 27 H 1.09001 * 109.46782 * 299.99697 * 1 2 3 28 28 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 29 29 H 1.07999 * 126.18281 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.46776 * 214.99617 * 9 8 7 31 31 H 1.08994 * 109.47215 * 334.99823 * 9 8 7 32 32 H 1.09005 * 109.46545 * 305.85668 * 11 10 9 33 33 H 1.09008 * 109.46225 * 65.82143 * 11 10 9 34 34 H 1.09003 * 109.50195 * 180.88187 * 12 11 10 35 35 H 1.08995 * 109.49522 * 60.76499 * 12 11 10 36 36 H 1.08997 * 109.52712 * 297.74740 * 13 12 11 37 37 H 1.09002 * 109.51475 * 177.55781 * 13 12 11 38 38 H 0.96999 * 119.99917 * 179.97438 * 19 18 16 39 39 H 1.09001 * 109.46272 * 294.17515 * 24 10 9 40 40 H 1.09000 * 109.46032 * 54.13856 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2192 0.0005 5 6 3.5391 1.2776 -0.0006 6 7 4.3870 0.2326 -0.0017 7 6 5.6021 0.7181 -0.0013 8 7 5.5048 2.0607 -0.0005 9 6 6.6288 3.0003 0.0006 10 7 6.9278 3.4077 -1.3787 11 6 5.6980 3.7482 -2.1052 12 6 6.0312 4.0260 -3.5729 13 6 7.0309 5.1828 -3.6540 14 6 8.2829 4.8225 -2.8494 15 1 8.7567 3.9437 -3.2866 16 6 9.2478 5.9797 -2.8752 17 1 9.5474 6.4537 -1.9521 18 6 9.7483 6.4334 -4.0771 19 7 9.3831 5.8565 -5.2012 20 14 10.9449 7.8674 -4.1091 21 1 12.1566 7.5186 -3.3247 22 1 11.3305 8.1591 -5.5132 23 1 10.2984 9.0649 -3.5148 24 6 7.8844 4.5217 -1.4028 25 7 4.2565 2.3802 -0.0062 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 6.5177 0.1452 -0.0023 30 1 6.3673 3.8788 0.5904 31 1 7.5046 2.5185 0.4351 32 1 4.9972 2.9156 -2.0432 33 1 5.2474 4.6357 -1.6608 34 1 5.1203 4.2939 -4.1084 35 1 6.4689 3.1343 -4.0216 36 1 6.5792 6.0845 -3.2406 37 1 7.3042 5.3556 -4.6950 38 1 9.7349 6.1758 -6.0468 39 1 7.4237 5.4056 -0.9616 40 1 8.7716 4.2508 -0.8305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853525085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:26 Heat of formation + Delta-G solvation = 5.790427 kcal Electronic energy + Delta-G solvation = -23654.098467 eV Core-core repulsion = 20084.915865 eV Total energy + Delta-G solvation = -3569.182602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.65391 -41.40655 -39.93222 -37.68365 -36.33907 -34.68773 -33.37116 -32.50566 -31.71381 -29.38002 -27.57931 -26.96345 -25.31926 -24.09959 -23.56996 -22.69963 -21.94673 -20.47560 -19.38141 -18.62338 -18.27981 -18.11919 -17.59132 -17.35561 -16.53676 -16.02174 -15.91895 -15.67589 -15.21275 -14.99135 -14.74967 -14.45586 -14.30271 -13.99583 -13.70008 -13.36644 -13.09568 -12.91917 -12.81048 -12.64790 -12.59251 -12.11221 -12.01448 -11.91191 -11.81168 -11.65950 -11.56485 -11.41495 -11.11190 -10.76086 -10.70934 -10.38405 -9.43695 -8.07298 -6.20949 -0.05913 0.80469 0.94892 1.44776 1.45425 1.52524 1.62357 1.93266 2.43857 2.84022 3.04076 3.21199 3.45072 3.81989 3.95627 4.01849 4.13866 4.22271 4.25857 4.32137 4.35522 4.51910 4.56696 4.66263 4.72804 4.80059 4.88664 4.95050 5.01280 5.09272 5.18121 5.24697 5.40534 5.45987 5.64041 5.85052 5.94237 6.03796 6.14496 6.37409 6.40272 6.91027 6.92102 7.47578 8.97418 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.036092 B = 0.003097 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.600082 B = 9037.701525 C = 9379.574000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.340 6.340 3 C 0.572 3.428 4 O -0.513 6.513 5 C 0.131 3.869 6 N -0.490 5.490 7 C 0.230 3.770 8 N -0.292 5.292 9 C 0.283 3.717 10 N -0.552 5.552 11 C 0.074 3.926 12 C -0.109 4.109 13 C -0.105 4.105 14 C 0.055 3.945 15 H 0.006 0.994 16 C -0.533 4.533 17 H 0.059 0.941 18 C 0.014 3.986 19 N -0.917 5.917 20 Si 0.952 3.048 21 H -0.267 1.267 22 H -0.290 1.290 23 H -0.274 1.274 24 C 0.084 3.916 25 N -0.264 5.264 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.142 0.858 29 H 0.278 0.722 30 H 0.080 0.920 31 H 0.172 0.828 32 H 0.059 0.941 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.058 0.942 38 H 0.259 0.741 39 H 0.027 0.973 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.584 -12.090 12.302 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.253 6.253 3 C 0.413 3.587 4 O -0.399 6.399 5 C -0.145 4.145 6 N -0.216 5.216 7 C -0.065 4.065 8 N -0.088 5.088 9 C 0.075 3.925 10 N -0.279 5.279 11 C -0.054 4.054 12 C -0.146 4.146 13 C -0.143 4.143 14 C 0.036 3.964 15 H 0.024 0.976 16 C -0.571 4.571 17 H 0.078 0.922 18 C -0.185 4.185 19 N -0.556 5.556 20 Si 0.778 3.222 21 H -0.192 1.192 22 H -0.215 1.215 23 H -0.199 1.199 24 C -0.042 4.042 25 N -0.107 5.107 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.160 0.840 29 H 0.294 0.706 30 H 0.098 0.902 31 H 0.189 0.811 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.008 -11.904 11.893 19.578 hybrid contribution 0.230 1.734 -0.260 1.769 sum -9.778 -10.169 11.632 18.285 Atomic orbital electron populations 1.23772 0.73025 1.06536 1.03152 1.86612 1.25859 1.29678 1.83194 1.18914 0.85048 0.82208 0.72552 1.90878 1.65841 1.36959 1.46201 1.22279 0.93848 0.86593 1.11799 1.71386 0.99871 1.29901 1.20440 1.27547 0.99563 0.82076 0.97309 1.47707 1.04067 1.08987 1.48014 1.23117 0.85513 0.92235 0.91647 1.62357 1.12892 1.40190 1.12413 1.21888 0.90587 0.98337 0.94575 1.21557 0.98752 0.99198 0.95140 1.21496 0.95526 0.94789 1.02472 1.18564 0.92413 0.94868 0.90546 0.97629 1.21479 1.26240 1.16534 0.92857 0.92234 1.25707 0.98117 0.99190 0.95508 1.70027 1.45009 1.42572 0.98023 0.85703 0.79725 0.79935 0.76819 1.19225 1.21533 1.19941 1.22053 0.93964 0.88887 0.99333 1.74311 0.91999 1.26161 1.18247 0.91492 0.91135 0.84036 0.70626 0.90245 0.81121 0.92260 0.95752 0.92465 0.92837 0.95968 0.92312 0.93171 0.95519 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.34 -8.20 10.58 -56.29 -0.60 -8.80 16 3 C 0.57 16.98 7.97 70.34 0.56 17.54 16 4 O -0.51 -17.33 16.88 19.91 0.34 -17.00 16 5 C 0.13 3.93 7.99 137.07 1.10 5.02 16 6 N -0.49 -12.78 11.42 -193.09 -2.21 -14.99 16 7 C 0.23 4.47 12.61 180.30 2.27 6.74 16 8 N -0.29 -6.88 2.64 -361.44 -0.95 -7.83 16 9 C 0.28 5.91 6.38 170.80 1.09 7.00 16 10 N -0.55 -16.71 4.88 -908.70 -4.43 -21.14 16 11 C 0.07 2.58 4.87 86.33 0.42 3.00 16 12 C -0.11 -4.29 6.09 30.65 0.19 -4.10 16 13 C -0.10 -4.90 5.03 30.67 0.15 -4.75 16 14 C 0.05 2.57 2.26 -11.49 -0.03 2.55 16 15 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 16 C -0.53 -27.53 8.56 25.60 0.22 -27.31 16 17 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 18 C 0.01 0.73 5.30 84.65 0.45 1.18 16 19 N -0.92 -51.91 11.36 21.45 0.24 -51.66 16 20 Si 0.95 42.11 29.54 68.60 2.03 44.14 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 C 0.08 2.99 4.65 86.32 0.40 3.39 16 25 N -0.26 -8.00 10.27 -52.49 -0.54 -8.53 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 28 H 0.14 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.28 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.08 1.65 8.08 -2.39 -0.02 1.64 16 31 H 0.17 1.99 8.12 -2.39 -0.02 1.97 16 32 H 0.06 2.07 5.98 -2.38 -0.01 2.05 16 33 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 3.15 6.16 -2.39 -0.01 3.14 16 38 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 39 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 2.79 8.12 -2.39 -0.02 2.77 16 Total: -1.00 -70.34 335.00 2.95 -67.39 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.04 Total: 6.54 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 8.02 Total: 11.88 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -7.88 Total: -104.15 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.26 Total: -25.80 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -70.34 2.95 -67.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.183 kcal (2) G-P(sol) polarization free energy of solvation -70.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds