Wall clock time and date at job start Fri Apr 10 2020 17:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99965 * 2 1 4 4 H 1.48496 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47148 * 300.00139 * 3 2 1 6 6 H 1.48504 * 109.47015 * 60.00009 * 3 2 1 7 7 C 1.37876 * 120.00586 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00660 * 184.21038 * 7 2 1 9 9 C 1.50704 * 119.99542 * 4.20992 * 7 2 1 10 10 C 1.52997 * 115.54936 * 92.25253 * 9 7 2 11 11 N 1.46505 * 109.46872 * 66.29386 * 10 9 7 12 12 C 1.34778 * 120.00166 * 185.22129 * 11 10 9 13 13 O 1.21613 * 119.99731 * 359.97438 * 12 11 10 14 14 C 1.47102 * 120.00255 * 179.97438 * 12 11 10 15 15 C 1.32990 * 120.00081 * 186.58849 * 14 12 11 16 16 C 1.50696 * 120.00243 * 17.74619 * 15 14 12 17 17 N 1.46901 * 109.47376 * 129.84813 * 16 15 14 18 18 C 1.47020 * 110.99893 * 293.63659 * 17 16 15 19 19 C 1.53092 * 109.25635 * 177.60689 * 18 17 16 20 20 O 1.43018 * 109.25985 * 56.85107 * 19 18 17 21 21 C 1.43015 * 113.73559 * 301.32681 * 20 19 18 22 22 C 1.47017 * 111.00277 * 170.00261 * 17 16 15 23 23 C 1.52998 * 117.49979 * 237.92929 * 9 7 2 24 24 C 1.53005 * 117.50022 * 306.58972 * 9 7 2 25 25 H 0.97005 * 120.00078 * 5.00565 * 1 2 3 26 26 H 1.09000 * 109.47670 * 306.29423 * 10 9 7 27 27 H 1.09002 * 109.47569 * 186.28404 * 10 9 7 28 28 H 0.97000 * 120.00040 * 5.21179 * 11 10 9 29 29 H 1.08003 * 119.99820 * 6.30765 * 14 12 11 30 30 H 1.08002 * 120.00283 * 197.74865 * 15 14 12 31 31 H 1.08995 * 109.47576 * 249.84950 * 16 15 14 32 32 H 1.09004 * 109.46879 * 9.84718 * 16 15 14 33 33 H 1.09000 * 109.50740 * 297.54285 * 18 17 16 34 34 H 1.08999 * 109.50301 * 57.67180 * 18 17 16 35 35 H 1.08999 * 109.51022 * 296.91213 * 19 18 17 36 36 H 1.08999 * 109.53859 * 176.80701 * 19 18 17 37 37 H 1.08999 * 109.50783 * 298.73419 * 21 20 19 38 38 H 1.08993 * 109.53923 * 178.62704 * 21 20 19 39 39 H 1.09000 * 109.50390 * 302.32671 * 22 17 16 40 40 H 1.09008 * 109.50420 * 62.45532 * 22 17 16 41 41 H 1.09006 * 117.49749 * 215.00139 * 23 9 7 42 42 H 1.09002 * 117.49824 * 0.02562 * 23 9 7 43 43 H 1.09003 * 117.49347 * 359.97342 * 24 9 7 44 44 H 1.08996 * 117.49972 * 144.97469 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0823 -1.1952 0.0692 9 6 1.2541 -2.4974 -0.0947 10 6 1.0602 -3.0452 -1.5100 11 7 2.3609 -3.4173 -2.0721 12 6 2.4491 -3.8275 -3.3529 13 8 1.4489 -3.8893 -4.0418 14 6 3.7553 -4.2005 -3.9175 15 6 3.8645 -4.4788 -5.2134 16 6 2.7877 -4.0399 -6.1718 17 7 3.4000 -3.3418 -7.3101 18 6 4.0158 -2.0769 -6.8831 19 6 4.6918 -1.4132 -8.0856 20 8 3.7265 -1.2221 -9.1234 21 6 3.1073 -2.4338 -9.5639 22 6 2.4152 -3.1078 -8.3764 23 6 1.4524 -3.5109 1.0342 24 6 0.1334 -2.7430 0.9176 25 1 -0.4850 0.8369 -0.0733 26 1 0.5992 -2.2809 -2.1356 27 1 0.4153 -3.9233 -1.4746 28 1 3.1587 -3.3682 -1.5225 29 1 4.6264 -4.2439 -3.2805 30 1 4.7251 -5.0195 -5.5789 31 1 2.2432 -4.9130 -6.5313 32 1 2.0988 -3.3671 -5.6609 33 1 3.2473 -1.4138 -6.4858 34 1 4.7595 -2.2765 -6.1117 35 1 5.4960 -2.0525 -8.4498 36 1 5.1010 -0.4481 -7.7870 37 1 3.8655 -3.1028 -9.9710 38 1 2.3702 -2.2073 -10.3342 39 1 1.9907 -4.0599 -8.6949 40 1 1.6211 -2.4612 -8.0029 41 1 1.4448 -4.5680 0.7686 42 1 2.1254 -3.2347 1.8460 43 1 -0.0608 -1.9619 1.6527 44 1 -0.7421 -3.2945 0.5751 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867977399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:33 Heat of formation + Delta-G solvation = -26.223074 kcal Electronic energy + Delta-G solvation = -23781.192798 eV Core-core repulsion = 20314.162330 eV Total energy + Delta-G solvation = -3467.030468 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.82105 -39.13409 -36.89615 -36.01812 -33.39163 -32.98609 -31.94704 -31.27458 -28.47704 -26.61562 -25.39003 -24.14746 -24.10554 -21.57757 -21.03103 -20.48399 -19.62400 -18.76062 -17.04754 -16.39118 -16.27399 -16.03818 -15.36543 -15.18109 -15.14267 -14.71684 -14.54123 -14.34354 -14.25079 -13.67759 -13.41775 -12.89606 -12.67468 -12.58693 -12.18692 -11.97471 -11.78351 -11.54950 -11.51357 -11.27795 -11.03060 -10.93148 -10.69383 -10.54707 -10.23699 -9.83670 -9.58859 -9.38106 -9.22366 -9.12567 -8.46639 -8.34515 -8.28529 -8.05754 -6.10582 -4.19937 1.46568 3.23131 3.32365 3.34016 3.57419 3.71445 3.87856 3.90157 4.33575 4.73047 4.87087 4.89525 5.01207 5.11586 5.16221 5.16960 5.20398 5.37324 5.39374 5.47207 5.52491 5.65255 5.68886 5.77069 5.84154 5.96724 6.06025 6.31644 6.33095 6.42013 6.46561 6.50500 6.68636 6.81336 6.85565 6.95748 6.99789 7.11776 7.22980 7.37240 7.57786 7.77802 8.23404 8.30930 8.79773 8.82691 9.47282 10.96591 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.003792 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.189559 B = 7381.811717 C = 8469.484719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.073 3.927 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.496 4.496 8 H 0.060 0.940 9 C 0.018 3.982 10 C 0.162 3.838 11 N -0.697 5.697 12 C 0.530 3.470 13 O -0.556 6.556 14 C -0.209 4.209 15 C -0.064 4.064 16 C 0.055 3.945 17 N -0.539 5.539 18 C 0.015 3.985 19 C 0.065 3.935 20 O -0.387 6.387 21 C 0.065 3.935 22 C 0.018 3.982 23 C -0.214 4.214 24 C -0.135 4.135 25 H 0.261 0.739 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.400 0.600 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.537 -7.293 -13.092 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.131 4.131 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.534 4.534 8 H 0.078 0.922 9 C 0.018 3.982 10 C 0.039 3.961 11 N -0.344 5.344 12 C 0.319 3.681 13 O -0.438 6.438 14 C -0.231 4.231 15 C -0.085 4.085 16 C -0.071 4.071 17 N -0.264 5.264 18 C -0.113 4.113 19 C -0.012 4.012 20 O -0.306 6.306 21 C -0.012 4.012 22 C -0.110 4.110 23 C -0.251 4.251 24 C -0.173 4.173 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.234 0.766 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.953 -7.305 -13.732 17.469 hybrid contribution 0.256 1.127 0.857 1.438 sum 8.209 -6.178 -12.875 16.472 Atomic orbital electron populations 1.70014 1.05846 1.26812 1.48512 1.24977 0.94828 0.98981 0.94306 0.86607 0.80208 0.83945 0.77671 1.19703 1.20934 1.20986 1.20378 0.92501 0.88650 1.51845 0.92226 1.19071 0.99771 0.93842 0.85547 1.21046 0.82379 0.97056 0.95596 1.45947 1.12254 1.64451 1.11723 1.18630 0.89219 0.77917 0.82367 1.90644 1.38427 1.55646 1.59115 1.22821 0.97198 1.05862 0.97228 1.23463 0.98940 0.92638 0.93409 1.21793 0.95138 1.00114 0.90067 1.62160 1.32548 1.21168 1.10566 1.22804 0.99677 0.90727 0.98079 1.22670 0.90728 1.00837 0.86953 1.87983 1.56845 1.30854 1.54895 1.22652 0.96826 0.86374 0.95347 1.22748 0.94200 1.01076 0.92987 1.23066 1.02366 0.95435 1.04244 1.22444 0.90081 1.00777 1.04011 0.92938 0.91407 0.94439 0.76562 0.85326 0.85732 0.89752 0.88976 0.93576 0.89530 0.92418 0.88505 0.92426 0.88591 0.89661 0.93620 0.91832 0.90375 0.89001 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.20 12.03 55.43 0.67 -23.53 16 2 C 0.07 1.93 5.41 -17.82 -0.10 1.83 16 3 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.50 -12.71 8.80 -34.44 -0.30 -13.01 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.02 0.43 1.56 -155.66 -0.24 0.18 16 10 C 0.16 3.59 5.51 -4.04 -0.02 3.57 16 11 N -0.70 -13.05 5.47 -61.49 -0.34 -13.38 16 12 C 0.53 9.50 7.52 -12.66 -0.10 9.40 16 13 O -0.56 -11.57 13.41 5.27 0.07 -11.50 16 14 C -0.21 -2.81 10.00 -37.81 -0.38 -3.19 16 15 C -0.06 -0.78 8.64 -36.13 -0.31 -1.10 16 16 C 0.05 0.75 4.46 -4.98 -0.02 0.73 16 17 N -0.54 -6.60 4.72 -235.75 -1.11 -7.71 16 18 C 0.02 0.19 5.47 -3.71 -0.02 0.17 16 19 C 0.07 0.70 7.01 37.20 0.26 0.96 16 20 O -0.39 -4.78 10.83 -35.23 -0.38 -5.16 16 21 C 0.07 0.65 7.01 37.20 0.26 0.91 16 22 C 0.02 0.20 5.64 -3.71 -0.02 0.18 16 23 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 24 C -0.14 -3.10 8.87 -26.69 -0.24 -3.34 16 25 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 26 H 0.07 1.72 8.13 -51.93 -0.42 1.29 16 27 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 28 H 0.40 6.79 8.46 -40.82 -0.35 6.45 16 29 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 32 H 0.09 1.59 5.12 -51.93 -0.27 1.33 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.99 7.23 -51.93 -0.38 0.62 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 40 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 43 H 0.09 2.29 7.74 -51.93 -0.40 1.89 16 44 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -29.56 359.62 -9.45 -39.02 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -7.26 Total: 8.69 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -1.50 Total: -7.38 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.78 Total: -44.63 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.31 Total: -16.67 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.56 -9.45 -39.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867977399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.794 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds