Wall clock time and date at job start Fri Apr 10 2020 17:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99965 * 2 1 4 4 H 1.48496 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47148 * 300.00139 * 3 2 1 6 6 H 1.48504 * 109.47015 * 60.00009 * 3 2 1 7 7 C 1.37876 * 120.00586 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00660 * 184.21038 * 7 2 1 9 9 C 1.50704 * 119.99542 * 4.20992 * 7 2 1 10 10 C 1.52997 * 115.54936 * 92.25253 * 9 7 2 11 11 N 1.46505 * 109.46872 * 66.29386 * 10 9 7 12 12 C 1.34778 * 120.00166 * 185.22129 * 11 10 9 13 13 O 1.21613 * 119.99731 * 359.97438 * 12 11 10 14 14 C 1.47102 * 120.00255 * 179.97438 * 12 11 10 15 15 C 1.32990 * 120.00081 * 186.58849 * 14 12 11 16 16 C 1.50696 * 120.00243 * 17.74619 * 15 14 12 17 17 N 1.46901 * 109.47376 * 129.84813 * 16 15 14 18 18 C 1.47020 * 110.99893 * 293.63659 * 17 16 15 19 19 C 1.53092 * 109.25635 * 177.60689 * 18 17 16 20 20 O 1.43018 * 109.25985 * 56.85107 * 19 18 17 21 21 C 1.43015 * 113.73559 * 301.32681 * 20 19 18 22 22 C 1.47017 * 111.00277 * 170.00261 * 17 16 15 23 23 C 1.52998 * 117.49979 * 237.92929 * 9 7 2 24 24 C 1.53005 * 117.50022 * 306.58972 * 9 7 2 25 25 H 0.97005 * 120.00078 * 5.00565 * 1 2 3 26 26 H 1.09000 * 109.47670 * 306.29423 * 10 9 7 27 27 H 1.09002 * 109.47569 * 186.28404 * 10 9 7 28 28 H 0.97000 * 120.00040 * 5.21179 * 11 10 9 29 29 H 1.08003 * 119.99820 * 6.30765 * 14 12 11 30 30 H 1.08002 * 120.00283 * 197.74865 * 15 14 12 31 31 H 1.08995 * 109.47576 * 249.84950 * 16 15 14 32 32 H 1.09004 * 109.46879 * 9.84718 * 16 15 14 33 33 H 1.09000 * 109.50740 * 297.54285 * 18 17 16 34 34 H 1.08999 * 109.50301 * 57.67180 * 18 17 16 35 35 H 1.08999 * 109.51022 * 296.91213 * 19 18 17 36 36 H 1.08999 * 109.53859 * 176.80701 * 19 18 17 37 37 H 1.08999 * 109.50783 * 298.73419 * 21 20 19 38 38 H 1.08993 * 109.53923 * 178.62704 * 21 20 19 39 39 H 1.09000 * 109.50390 * 302.32671 * 22 17 16 40 40 H 1.09008 * 109.50420 * 62.45532 * 22 17 16 41 41 H 1.09006 * 117.49749 * 215.00139 * 23 9 7 42 42 H 1.09002 * 117.49824 * 0.02562 * 23 9 7 43 43 H 1.09003 * 117.49347 * 359.97342 * 24 9 7 44 44 H 1.08996 * 117.49972 * 144.97469 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0823 -1.1952 0.0692 9 6 1.2541 -2.4974 -0.0947 10 6 1.0602 -3.0452 -1.5100 11 7 2.3609 -3.4173 -2.0721 12 6 2.4491 -3.8275 -3.3529 13 8 1.4489 -3.8893 -4.0418 14 6 3.7553 -4.2005 -3.9175 15 6 3.8645 -4.4788 -5.2134 16 6 2.7877 -4.0399 -6.1718 17 7 3.4000 -3.3418 -7.3101 18 6 4.0158 -2.0769 -6.8831 19 6 4.6918 -1.4132 -8.0856 20 8 3.7265 -1.2221 -9.1234 21 6 3.1073 -2.4338 -9.5639 22 6 2.4152 -3.1078 -8.3764 23 6 1.4524 -3.5109 1.0342 24 6 0.1334 -2.7430 0.9176 25 1 -0.4850 0.8369 -0.0733 26 1 0.5992 -2.2809 -2.1356 27 1 0.4153 -3.9233 -1.4746 28 1 3.1587 -3.3682 -1.5225 29 1 4.6264 -4.2439 -3.2805 30 1 4.7251 -5.0195 -5.5789 31 1 2.2432 -4.9130 -6.5313 32 1 2.0988 -3.3671 -5.6609 33 1 3.2473 -1.4138 -6.4858 34 1 4.7595 -2.2765 -6.1117 35 1 5.4960 -2.0525 -8.4498 36 1 5.1010 -0.4481 -7.7870 37 1 3.8655 -3.1028 -9.9710 38 1 2.3702 -2.2073 -10.3342 39 1 1.9907 -4.0599 -8.6949 40 1 1.6211 -2.4612 -8.0029 41 1 1.4448 -4.5680 0.7686 42 1 2.1254 -3.2347 1.8460 43 1 -0.0608 -1.9619 1.6527 44 1 -0.7421 -3.2945 0.5751 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867977399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:33 Heat of formation + Delta-G solvation = -46.766001 kcal Electronic energy + Delta-G solvation = -23782.083606 eV Core-core repulsion = 20314.162330 eV Total energy + Delta-G solvation = -3467.921276 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99512 -40.32589 -38.59610 -37.09651 -34.98219 -34.08206 -33.92016 -32.15043 -29.59760 -28.21248 -27.24244 -25.26762 -25.00482 -23.05654 -22.60844 -21.43105 -21.33729 -20.25339 -18.18824 -18.06637 -17.31684 -17.13625 -16.82406 -16.47404 -16.40015 -16.02695 -15.90671 -15.67298 -15.43335 -15.21207 -14.60253 -14.35946 -14.11646 -13.85135 -13.50556 -13.38568 -13.19384 -12.94469 -12.86636 -12.83427 -12.42989 -12.36587 -12.19260 -12.01901 -11.55308 -11.38428 -11.03536 -10.86859 -10.66063 -10.40683 -10.37931 -10.02013 -9.76573 -9.36229 -8.12557 -6.25890 0.36396 1.37982 1.41725 1.50647 2.29909 2.39105 2.47833 2.78656 2.96010 3.15407 3.51607 3.82021 3.94055 4.00205 4.02457 4.15947 4.19357 4.24763 4.32448 4.48219 4.53349 4.53998 4.62652 4.65597 4.69019 4.69559 4.79264 4.85278 4.89017 4.95619 5.01450 5.01663 5.27612 5.29445 5.47323 5.58170 5.62628 5.71952 5.76415 5.86693 5.92160 6.15940 6.34466 6.79210 6.82802 7.39462 7.43764 8.94413 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.003792 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.189559 B = 7381.811717 C = 8469.484719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.946 3.054 4 H -0.260 1.260 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.500 4.500 8 H 0.063 0.937 9 C -0.002 4.002 10 C 0.180 3.820 11 N -0.695 5.695 12 C 0.522 3.478 13 O -0.593 6.593 14 C -0.217 4.217 15 C -0.042 4.042 16 C 0.054 3.946 17 N -0.528 5.528 18 C 0.015 3.985 19 C 0.067 3.933 20 O -0.410 6.410 21 C 0.066 3.934 22 C 0.014 3.986 23 C -0.178 4.178 24 C -0.149 4.149 25 H 0.258 0.742 26 H 0.023 0.977 27 H 0.038 0.962 28 H 0.411 0.589 29 H 0.165 0.835 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.012 0.988 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.019 0.981 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.459 -8.600 -13.949 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.184 1.184 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.538 4.538 8 H 0.081 0.919 9 C -0.003 4.003 10 C 0.055 3.945 11 N -0.344 5.344 12 C 0.314 3.686 13 O -0.477 6.477 14 C -0.239 4.239 15 C -0.062 4.062 16 C -0.072 4.072 17 N -0.253 5.253 18 C -0.114 4.114 19 C -0.010 4.010 20 O -0.329 6.329 21 C -0.011 4.011 22 C -0.114 4.114 23 C -0.215 4.215 24 C -0.187 4.187 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.247 0.753 29 H 0.182 0.818 30 H 0.182 0.818 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.038 0.962 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.916 -8.623 -14.582 20.153 hybrid contribution -0.701 1.498 1.051 1.959 sum 10.215 -7.125 -13.531 18.390 Atomic orbital electron populations 1.70137 1.07180 1.27198 1.50139 1.25696 0.95504 1.02073 0.94504 0.85693 0.79669 0.80307 0.77112 1.18366 1.21607 1.20932 1.20711 0.92837 0.89704 1.50556 0.91855 1.19095 1.00292 0.94370 0.86502 1.20565 0.83987 0.95571 0.94363 1.45825 1.11251 1.64857 1.12428 1.19459 0.90768 0.76783 0.81639 1.90649 1.40353 1.56942 1.59750 1.22821 0.95768 1.07130 0.98144 1.23736 0.99035 0.90935 0.92512 1.21671 0.95388 0.99440 0.90743 1.62269 1.32215 1.20940 1.09899 1.22857 0.99030 0.90220 0.99261 1.22768 0.90609 1.01720 0.85906 1.87957 1.57386 1.32274 1.55243 1.22797 0.97504 0.85870 0.94885 1.22871 0.93659 1.01615 0.93263 1.23039 0.99965 0.96122 1.02340 1.22346 0.91370 1.01157 1.03850 0.93325 0.95885 0.94427 0.75336 0.81762 0.81816 0.89507 0.93081 0.96944 0.88445 0.90544 0.87405 0.90766 0.86879 0.87994 0.96230 0.89150 0.89776 0.91573 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.78 12.03 21.45 0.26 -51.52 16 2 C 0.02 1.20 5.41 84.66 0.46 1.66 16 3 Si 0.95 42.62 29.54 68.60 2.03 44.65 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.50 -25.66 8.80 25.60 0.23 -25.43 16 8 H 0.06 3.13 7.82 -2.92 -0.02 3.11 16 9 C 0.00 -0.09 1.56 -52.93 -0.08 -0.17 16 10 C 0.18 8.13 5.51 86.38 0.48 8.60 16 11 N -0.70 -25.82 5.47 -466.70 -2.55 -28.38 16 12 C 0.52 18.62 7.52 86.57 0.65 19.27 16 13 O -0.59 -25.47 13.41 -4.07 -0.05 -25.53 16 14 C -0.22 -5.31 10.00 23.43 0.23 -5.07 16 15 C -0.04 -0.91 8.64 24.52 0.21 -0.70 16 16 C 0.05 1.44 4.46 85.56 0.38 1.82 16 17 N -0.53 -12.27 4.72 -899.78 -4.24 -16.52 16 18 C 0.01 0.35 5.47 86.31 0.47 0.82 16 19 C 0.07 1.31 7.01 72.01 0.50 1.81 16 20 O -0.41 -9.59 10.83 -148.98 -1.61 -11.20 16 21 C 0.07 1.21 7.01 72.01 0.50 1.71 16 22 C 0.01 0.31 5.64 86.31 0.49 0.79 16 23 C -0.18 -7.04 9.96 30.62 0.30 -6.73 16 24 C -0.15 -6.91 8.87 30.62 0.27 -6.64 16 25 H 0.26 14.18 8.32 -92.70 -0.77 13.41 16 26 H 0.02 1.22 8.13 -2.39 -0.02 1.20 16 27 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 28 H 0.41 13.34 8.46 -92.71 -0.78 12.55 16 29 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.09 2.26 8.04 -2.39 -0.02 2.24 16 32 H 0.05 1.84 5.12 -2.39 -0.01 1.83 16 33 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.10 2.05 7.23 -2.39 -0.02 2.03 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.10 1.85 8.09 -2.39 -0.02 1.83 16 40 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 42 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 43 H 0.07 3.39 7.74 -2.39 -0.02 3.37 16 44 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -66.38 359.62 -0.89 -67.26 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.20 Total: 29.49 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 5.10 Total: -8.25 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -6.54 Total: -96.42 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.67 Total: -36.73 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -66.38 -0.89 -67.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867977399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.494 kcal (2) G-P(sol) polarization free energy of solvation -66.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds