Wall clock time and date at job start Fri Apr 10 2020 17:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00005 * 2 1 4 4 H 1.48499 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46653 * 299.99853 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99717 * 3 2 1 7 7 C 1.37880 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99664 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00173 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.50386 * 299.91826 * 9 7 2 11 11 C 1.53122 * 109.50716 * 59.99409 * 9 7 2 12 12 C 1.53114 * 109.16414 * 177.59445 * 11 9 7 13 13 C 1.53035 * 109.28017 * 302.34916 * 12 11 9 14 14 N 1.46851 * 109.52505 * 59.17901 * 13 12 11 15 15 C 1.46893 * 111.00175 * 174.16347 * 14 13 12 16 16 N 1.46506 * 109.47422 * 81.04322 * 15 14 13 17 17 C 1.47133 * 124.32965 * 270.00223 * 16 15 14 18 18 C 1.53428 * 105.12177 * 195.63921 * 17 16 15 19 19 C 1.52495 * 116.73790 * 105.47417 * 18 17 16 20 20 O 1.44484 * 84.98864 * 97.07254 * 19 18 17 21 21 C 1.44486 * 93.63165 * 23.07848 * 20 19 18 22 22 C 1.53200 * 103.26203 * 336.20268 * 18 17 16 23 23 C 1.34588 * 124.33108 * 89.97608 * 16 15 14 24 24 O 1.21286 * 124.93211 * 359.66464 * 23 16 15 25 25 C 1.46845 * 111.19307 * 298.25719 * 14 13 12 26 26 H 0.97001 * 119.99824 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.51664 * 57.69099 * 11 9 7 28 28 H 1.09002 * 109.57762 * 297.53564 * 11 9 7 29 29 H 1.08999 * 109.50696 * 182.40151 * 12 11 9 30 30 H 1.09007 * 109.49989 * 62.28541 * 12 11 9 31 31 H 1.09004 * 109.46298 * 299.16104 * 13 12 11 32 32 H 1.09005 * 109.46405 * 179.19172 * 13 12 11 33 33 H 1.09001 * 109.46985 * 321.04513 * 15 14 13 34 34 H 1.08997 * 109.47539 * 201.04592 * 15 14 13 35 35 H 1.09000 * 110.31657 * 314.51198 * 17 16 15 36 36 H 1.08995 * 110.31594 * 76.60571 * 17 16 15 37 37 H 1.09001 * 113.95011 * 211.08235 * 19 18 17 38 38 H 1.08996 * 113.95036 * 343.05723 * 19 18 17 39 39 H 1.09005 * 113.95250 * 222.91366 * 21 20 19 40 40 H 1.08997 * 114.08575 * 90.94560 * 21 20 19 41 41 H 1.09002 * 110.55972 * 264.60848 * 22 18 17 42 42 H 1.09005 * 110.55708 * 141.91742 * 22 18 17 43 43 H 1.09000 * 109.46180 * 181.75822 * 25 14 13 44 44 H 1.08997 * 109.47064 * 301.72585 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6250 -2.5579 0.8908 11 6 0.3708 -2.5813 -1.2497 12 6 -0.3448 -3.9347 -1.2724 13 6 0.6952 -5.0569 -1.2399 14 7 1.5111 -4.9348 -0.0250 15 6 2.4286 -6.0741 0.1097 16 7 3.6061 -5.8554 -0.7342 17 6 3.7149 -6.2901 -2.1356 18 6 5.2116 -6.2123 -2.4637 19 6 5.9645 -7.5356 -2.5510 20 8 5.7503 -7.4181 -3.9751 21 6 5.5844 -5.9837 -3.9246 22 6 5.7402 -5.1890 -1.4536 23 6 4.7264 -5.2308 -0.3268 24 8 4.8999 -4.7679 0.7808 25 6 2.2449 -3.6630 -0.0039 26 1 -0.4850 0.8401 0.0004 27 1 0.9923 -2.4829 -2.1397 28 1 -0.3671 -1.7793 -1.2302 29 1 -0.9401 -4.0165 -2.1819 30 1 -0.9959 -4.0167 -0.4020 31 1 1.3373 -4.9825 -2.1176 32 1 0.1885 -6.0220 -1.2415 33 1 1.9221 -6.9873 -0.2029 34 1 2.7397 -6.1691 1.1499 35 1 3.3573 -7.3142 -2.2431 36 1 3.1483 -5.6220 -2.7841 37 1 7.0113 -7.4695 -2.2542 38 1 5.4404 -8.3740 -2.0923 39 1 4.7635 -5.6113 -4.5376 40 1 6.5093 -5.4238 -4.0628 41 1 5.7765 -4.1949 -1.8992 42 1 6.7261 -5.4817 -1.0924 43 1 2.8636 -3.6155 0.8922 44 1 2.8797 -3.5950 -0.8873 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872624387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:47 Heat of formation + Delta-G solvation = -31.751933 kcal Electronic energy + Delta-G solvation = -25346.331000 eV Core-core repulsion = 21879.060783 eV Total energy + Delta-G solvation = -3467.270217 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.66615 -39.57307 -37.78233 -35.80906 -33.84070 -32.30559 -30.56725 -29.88241 -27.97939 -27.03744 -26.49530 -25.02690 -24.44697 -21.88073 -21.43393 -19.93040 -19.29435 -18.60855 -17.01881 -16.72457 -16.46142 -16.10050 -15.80040 -15.49729 -14.99948 -14.71730 -14.32367 -14.23205 -13.76928 -13.45624 -13.28946 -12.84525 -12.76727 -12.52819 -12.32733 -12.24683 -11.96319 -11.68202 -11.35817 -11.27709 -10.95353 -10.93535 -10.65758 -10.62221 -10.13630 -10.08830 -9.84588 -9.64583 -9.51983 -9.16615 -8.69563 -8.67754 -8.28503 -7.85481 -5.94983 -4.00234 2.72188 3.00961 3.31193 3.31525 3.39571 3.44450 3.73466 3.98431 4.35658 4.40808 4.58278 4.61147 4.94971 5.01022 5.14972 5.18563 5.22460 5.33145 5.35233 5.39570 5.49841 5.58739 5.61887 5.68985 5.73222 5.77217 5.83415 6.00677 6.18725 6.40490 6.50400 6.57025 6.68105 6.73982 7.01614 7.15890 7.20264 7.36924 7.59208 7.73606 7.79869 8.10029 8.18864 8.30079 8.51414 9.03884 9.63864 11.11198 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.004840 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.388847 B = 5783.425356 C = 6345.107268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.053 0.947 9 C 0.053 3.947 10 H 0.033 0.967 11 C -0.109 4.109 12 C -0.118 4.118 13 C 0.059 3.941 14 N -0.537 5.537 15 C 0.283 3.717 16 N -0.638 5.638 17 C 0.129 3.871 18 C -0.146 4.146 19 C 0.055 3.945 20 O -0.380 6.380 21 C 0.057 3.943 22 C -0.150 4.150 23 C 0.521 3.479 24 O -0.517 6.517 25 C 0.073 3.927 26 H 0.258 0.742 27 H 0.027 0.973 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.069 0.931 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.021 -15.341 -7.450 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.071 0.929 9 C 0.035 3.965 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.156 4.156 13 C -0.069 4.069 14 N -0.262 5.262 15 C 0.074 3.926 16 N -0.377 5.377 17 C 0.005 3.995 18 C -0.147 4.147 19 C -0.022 4.022 20 O -0.299 6.299 21 C -0.020 4.020 22 C -0.190 4.190 23 C 0.308 3.692 24 O -0.392 6.392 25 C -0.054 4.054 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.088 0.912 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 7.538 -15.180 -6.580 18.181 hybrid contribution 0.912 1.095 -0.674 1.576 sum 8.450 -14.085 -7.254 17.956 Atomic orbital electron populations 1.69903 1.05811 1.26133 1.51040 1.24923 0.94812 0.98902 0.95195 0.86586 0.80217 0.83989 0.77521 1.19851 1.21137 1.20991 1.21164 0.92832 0.90606 1.50212 0.92917 1.18692 0.92615 0.90555 0.94686 0.94931 1.21646 1.00004 0.94680 0.98422 1.21680 0.97143 0.96484 1.00256 1.22137 0.95521 0.98772 0.90443 1.62593 1.22901 1.03554 1.37172 1.22522 0.80744 0.94470 0.94887 1.49461 1.17000 1.58455 1.12765 1.21769 0.93406 1.01014 0.83305 1.23742 0.97196 0.96943 0.96782 1.23846 0.99855 0.96470 0.82019 1.89769 1.93124 1.22199 1.24775 1.23803 1.01682 0.83237 0.93299 1.22304 0.99781 1.01431 0.95514 1.20808 0.83227 0.76780 0.88416 1.90760 1.79745 1.46274 1.22419 1.22289 0.96260 0.87360 0.99451 0.93177 0.95395 0.89082 0.93525 0.92033 0.95774 0.92471 0.90036 0.88655 0.90023 0.90421 0.89464 0.88752 0.88412 0.89194 0.87131 0.87888 0.91242 0.96332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 11.35 55.43 0.63 -25.07 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -14.38 8.56 -34.44 -0.29 -14.67 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.37 2.26 -91.69 -0.21 1.16 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.59 5.02 -26.61 -0.13 -2.72 16 12 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 13 C 0.06 0.98 5.35 -3.83 -0.02 0.96 16 14 N -0.54 -9.77 4.89 -238.58 -1.17 -10.93 16 15 C 0.28 4.14 6.20 -63.32 -0.39 3.75 16 16 N -0.64 -8.73 2.29 -176.07 -0.40 -9.14 16 17 C 0.13 1.35 6.46 -3.47 -0.02 1.33 16 18 C -0.15 -1.32 1.16 -154.70 -0.18 -1.50 16 19 C 0.05 0.44 8.50 36.89 0.31 0.75 16 20 O -0.38 -3.80 12.46 -35.23 -0.44 -4.24 16 21 C 0.06 0.46 8.60 36.89 0.32 0.78 16 22 C -0.15 -1.65 6.31 -27.32 -0.17 -1.82 16 23 C 0.52 8.09 6.41 -10.61 -0.07 8.02 16 24 O -0.52 -10.37 16.12 5.55 0.09 -10.28 16 25 C 0.07 1.61 3.38 -3.83 -0.01 1.60 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.02 0.39 6.52 -51.93 -0.34 0.05 16 32 H 0.06 0.80 7.92 -51.93 -0.41 0.39 16 33 H 0.08 0.95 7.77 -51.93 -0.40 0.54 16 34 H 0.10 1.48 7.93 -51.93 -0.41 1.07 16 35 H 0.08 0.73 7.94 -51.93 -0.41 0.31 16 36 H 0.08 0.87 6.88 -51.93 -0.36 0.51 16 37 H 0.09 0.58 8.01 -51.93 -0.42 0.16 16 38 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 39 H 0.10 0.74 8.11 -51.93 -0.42 0.32 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.11 1.21 8.13 -51.93 -0.42 0.79 16 42 H 0.10 0.96 7.90 -51.93 -0.41 0.55 16 43 H 0.07 1.70 6.77 -51.93 -0.35 1.34 16 44 H 0.02 0.41 6.82 -51.93 -0.35 0.06 16 LS Contribution 339.26 15.07 5.11 5.11 Total: -1.00 -32.31 339.26 -9.43 -41.74 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.10 Total: -0.79 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.13 Total: -3.11 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.94 Total: -45.14 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.35 Total: -14.52 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.31 -9.43 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872624387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.990 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds