Wall clock time and date at job start Fri Apr 10 2020 17:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00005 * 2 1 4 4 H 1.48499 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46653 * 299.99853 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99717 * 3 2 1 7 7 C 1.37880 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99664 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00173 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.50386 * 299.91826 * 9 7 2 11 11 C 1.53122 * 109.50716 * 59.99409 * 9 7 2 12 12 C 1.53114 * 109.16414 * 177.59445 * 11 9 7 13 13 C 1.53035 * 109.28017 * 302.34916 * 12 11 9 14 14 N 1.46851 * 109.52505 * 59.17901 * 13 12 11 15 15 C 1.46893 * 111.00175 * 174.16347 * 14 13 12 16 16 N 1.46506 * 109.47422 * 81.04322 * 15 14 13 17 17 C 1.47133 * 124.32965 * 270.00223 * 16 15 14 18 18 C 1.53428 * 105.12177 * 195.63921 * 17 16 15 19 19 C 1.52495 * 116.73790 * 105.47417 * 18 17 16 20 20 O 1.44484 * 84.98864 * 97.07254 * 19 18 17 21 21 C 1.44486 * 93.63165 * 23.07848 * 20 19 18 22 22 C 1.53200 * 103.26203 * 336.20268 * 18 17 16 23 23 C 1.34588 * 124.33108 * 89.97608 * 16 15 14 24 24 O 1.21286 * 124.93211 * 359.66464 * 23 16 15 25 25 C 1.46845 * 111.19307 * 298.25719 * 14 13 12 26 26 H 0.97001 * 119.99824 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.51664 * 57.69099 * 11 9 7 28 28 H 1.09002 * 109.57762 * 297.53564 * 11 9 7 29 29 H 1.08999 * 109.50696 * 182.40151 * 12 11 9 30 30 H 1.09007 * 109.49989 * 62.28541 * 12 11 9 31 31 H 1.09004 * 109.46298 * 299.16104 * 13 12 11 32 32 H 1.09005 * 109.46405 * 179.19172 * 13 12 11 33 33 H 1.09001 * 109.46985 * 321.04513 * 15 14 13 34 34 H 1.08997 * 109.47539 * 201.04592 * 15 14 13 35 35 H 1.09000 * 110.31657 * 314.51198 * 17 16 15 36 36 H 1.08995 * 110.31594 * 76.60571 * 17 16 15 37 37 H 1.09001 * 113.95011 * 211.08235 * 19 18 17 38 38 H 1.08996 * 113.95036 * 343.05723 * 19 18 17 39 39 H 1.09005 * 113.95250 * 222.91366 * 21 20 19 40 40 H 1.08997 * 114.08575 * 90.94560 * 21 20 19 41 41 H 1.09002 * 110.55972 * 264.60848 * 22 18 17 42 42 H 1.09005 * 110.55708 * 141.91742 * 22 18 17 43 43 H 1.09000 * 109.46180 * 181.75822 * 25 14 13 44 44 H 1.08997 * 109.47064 * 301.72585 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6250 -2.5579 0.8908 11 6 0.3708 -2.5813 -1.2497 12 6 -0.3448 -3.9347 -1.2724 13 6 0.6952 -5.0569 -1.2399 14 7 1.5111 -4.9348 -0.0250 15 6 2.4286 -6.0741 0.1097 16 7 3.6061 -5.8554 -0.7342 17 6 3.7149 -6.2901 -2.1356 18 6 5.2116 -6.2123 -2.4637 19 6 5.9645 -7.5356 -2.5510 20 8 5.7503 -7.4181 -3.9751 21 6 5.5844 -5.9837 -3.9246 22 6 5.7402 -5.1890 -1.4536 23 6 4.7264 -5.2308 -0.3268 24 8 4.8999 -4.7679 0.7808 25 6 2.2449 -3.6630 -0.0039 26 1 -0.4850 0.8401 0.0004 27 1 0.9923 -2.4829 -2.1397 28 1 -0.3671 -1.7793 -1.2302 29 1 -0.9401 -4.0165 -2.1819 30 1 -0.9959 -4.0167 -0.4020 31 1 1.3373 -4.9825 -2.1176 32 1 0.1885 -6.0220 -1.2415 33 1 1.9221 -6.9873 -0.2029 34 1 2.7397 -6.1691 1.1499 35 1 3.3573 -7.3142 -2.2431 36 1 3.1483 -5.6220 -2.7841 37 1 7.0113 -7.4695 -2.2542 38 1 5.4404 -8.3740 -2.0923 39 1 4.7635 -5.6113 -4.5376 40 1 6.5093 -5.4238 -4.0628 41 1 5.7765 -4.1949 -1.8992 42 1 6.7261 -5.4817 -1.0924 43 1 2.8636 -3.6155 0.8922 44 1 2.8797 -3.5950 -0.8873 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872624387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:46 Heat of formation + Delta-G solvation = -54.392018 kcal Electronic energy + Delta-G solvation = -25347.312748 eV Core-core repulsion = 21879.060783 eV Total energy + Delta-G solvation = -3468.251965 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.51587 -40.66278 -39.28520 -37.04978 -35.53057 -33.88762 -31.85115 -31.72541 -28.90650 -27.64210 -27.62384 -27.00759 -25.56172 -23.40746 -23.15856 -21.07348 -20.25615 -20.15562 -18.59948 -17.82914 -17.69558 -17.08854 -16.80859 -16.70620 -16.29220 -16.02324 -15.74019 -15.66659 -15.10050 -14.74366 -14.57314 -14.37832 -14.19632 -14.01001 -13.68980 -13.28749 -13.16808 -12.91192 -12.85834 -12.71412 -12.57046 -12.42870 -12.08914 -11.85345 -11.76497 -11.69200 -11.45711 -10.98047 -10.84214 -10.69107 -10.68585 -10.42461 -9.95879 -9.29832 -8.12287 -6.26384 1.35244 1.37237 1.48998 1.53523 1.99042 2.39238 2.63142 3.02309 3.12286 3.14105 3.22672 3.46387 3.84573 4.03965 4.17386 4.25680 4.34557 4.37021 4.40062 4.45842 4.50976 4.56289 4.59780 4.62984 4.68898 4.73169 4.77299 4.88086 4.92712 4.96433 5.05542 5.06863 5.15199 5.15712 5.35481 5.43929 5.49269 5.59189 5.89278 6.01166 6.11071 6.17178 6.28465 6.41969 6.84805 7.12801 7.41276 8.92382 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.004840 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.388847 B = 5783.425356 C = 6345.107268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.039 0.961 9 C 0.051 3.949 10 H -0.010 1.010 11 C -0.100 4.100 12 C -0.112 4.112 13 C 0.064 3.936 14 N -0.552 5.552 15 C 0.283 3.717 16 N -0.636 5.636 17 C 0.126 3.874 18 C -0.139 4.139 19 C 0.059 3.941 20 O -0.399 6.399 21 C 0.060 3.940 22 C -0.142 4.142 23 C 0.505 3.495 24 O -0.576 6.576 25 C 0.103 3.897 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.034 0.966 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.036 0.964 44 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.594 -17.130 -9.518 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.205 1.205 7 C -0.574 4.574 8 H 0.057 0.943 9 C 0.032 3.968 10 H 0.008 0.992 11 C -0.138 4.138 12 C -0.150 4.150 13 C -0.063 4.063 14 N -0.277 5.277 15 C 0.074 3.926 16 N -0.373 5.373 17 C 0.003 3.997 18 C -0.140 4.140 19 C -0.017 4.017 20 O -0.319 6.319 21 C -0.017 4.017 22 C -0.182 4.182 23 C 0.294 3.706 24 O -0.455 6.455 25 C -0.025 4.025 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.139 0.861 43 H 0.054 0.946 44 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 8.103 -17.005 -8.692 20.746 hybrid contribution 0.703 1.638 -0.003 1.783 sum 8.806 -15.367 -8.695 19.731 Atomic orbital electron populations 1.70032 1.06998 1.27064 1.51116 1.25672 0.95693 1.02139 0.94633 0.85603 0.78848 0.79844 0.77966 1.19753 1.19843 1.20467 1.21443 0.92412 0.92493 1.51035 0.94301 1.18622 0.92960 0.91346 0.93884 0.99190 1.21414 0.98888 0.96712 0.96811 1.21604 0.97631 0.94645 1.01128 1.22172 0.94747 0.99507 0.89849 1.62448 1.23796 1.02698 1.38782 1.22518 0.80922 0.94402 0.94775 1.49481 1.16070 1.57607 1.14097 1.21987 0.94596 1.02193 0.80880 1.23756 0.96197 0.97166 0.96846 1.24000 1.00741 0.95871 0.81100 1.89761 1.93308 1.23012 1.25776 1.23940 1.02701 0.82780 0.92261 1.22302 0.99372 1.02241 0.94254 1.21662 0.84575 0.75825 0.88581 1.90724 1.81015 1.48650 1.25069 1.21680 0.94769 0.88534 0.97507 0.92932 0.95896 0.92449 0.90678 0.93259 0.94736 0.88247 0.85656 0.90391 0.87430 0.90741 0.87930 0.87730 0.87789 0.87657 0.87247 0.86120 0.94568 0.96853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.26 11.35 21.45 0.24 -54.02 16 2 C 0.02 1.01 5.30 84.65 0.45 1.46 16 3 Si 0.95 45.41 29.54 68.60 2.03 47.44 16 4 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.54 -31.55 8.56 25.60 0.22 -31.33 16 8 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 9 C 0.05 2.72 2.26 -11.49 -0.03 2.70 16 10 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 11 C -0.10 -4.83 5.02 30.67 0.15 -4.67 16 12 C -0.11 -4.15 6.09 30.64 0.19 -3.96 16 13 C 0.06 1.95 5.35 86.32 0.46 2.41 16 14 N -0.55 -19.68 4.89 -908.72 -4.44 -24.12 16 15 C 0.28 7.83 6.20 170.81 1.06 8.89 16 16 N -0.64 -16.44 2.29 -829.45 -1.90 -18.34 16 17 C 0.13 2.24 6.46 86.40 0.56 2.80 16 18 C -0.14 -2.12 1.16 -52.31 -0.06 -2.19 16 19 C 0.06 0.74 8.50 71.81 0.61 1.35 16 20 O -0.40 -6.66 12.46 -148.98 -1.86 -8.51 16 21 C 0.06 0.79 8.60 71.81 0.62 1.41 16 22 C -0.14 -2.90 6.31 30.21 0.19 -2.71 16 23 C 0.50 15.65 6.41 87.98 0.56 16.22 16 24 O -0.58 -24.11 16.12 -3.05 -0.05 -24.16 16 25 C 0.10 4.70 3.38 86.33 0.29 4.99 16 26 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 3.15 6.15 -2.39 -0.01 3.13 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.05 1.93 8.14 -2.38 -0.02 1.92 16 31 H 0.03 0.99 6.52 -2.39 -0.02 0.98 16 32 H 0.10 2.27 7.92 -2.38 -0.02 2.25 16 33 H 0.13 2.39 7.77 -2.39 -0.02 2.37 16 34 H 0.08 2.44 7.93 -2.39 -0.02 2.42 16 35 H 0.11 1.42 7.94 -2.39 -0.02 1.40 16 36 H 0.07 1.43 6.88 -2.39 -0.02 1.41 16 37 H 0.10 0.99 8.01 -2.39 -0.02 0.97 16 38 H 0.10 1.11 8.05 -2.39 -0.02 1.09 16 39 H 0.10 1.25 8.11 -2.38 -0.02 1.23 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.11 2.29 8.13 -2.39 -0.02 2.27 16 42 H 0.12 2.02 7.90 -2.38 -0.02 2.00 16 43 H 0.04 1.87 6.77 -2.39 -0.02 1.86 16 44 H 0.01 0.61 6.82 -2.39 -0.02 0.59 16 Total: -1.00 -74.95 339.26 0.29 -74.66 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.98 Total: 9.68 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 5.27 Total: -2.64 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -6.09 Total: -96.48 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -1.91 Total: -32.67 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -74.95 0.29 -74.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872624387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.272 kcal (2) G-P(sol) polarization free energy of solvation -74.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds