Wall clock time and date at job start Fri Apr 10 2020 17:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00352 * 2 1 4 4 H 1.48495 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47007 * 300.00216 * 3 2 1 6 6 H 1.48506 * 109.46655 * 59.99841 * 3 2 1 7 7 C 1.37878 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00089 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.54033 * 60.10221 * 9 7 2 11 11 C 1.53126 * 109.50373 * 300.00256 * 9 7 2 12 12 C 1.53116 * 109.15991 * 182.40730 * 11 9 7 13 13 C 1.53036 * 109.27920 * 57.65662 * 12 11 9 14 14 N 1.46847 * 109.52029 * 300.81425 * 13 12 11 15 15 C 1.46903 * 110.99621 * 185.84046 * 14 13 12 16 16 N 1.46497 * 109.46940 * 81.05068 * 15 14 13 17 17 C 1.47133 * 124.32971 * 89.99854 * 16 15 14 18 18 C 1.53048 * 105.18574 * 164.33276 * 17 16 15 19 19 C 1.52501 * 116.64695 * 254.45829 * 18 17 16 20 20 O 1.44499 * 84.98596 * 219.55136 * 19 18 17 21 21 C 1.44487 * 93.62657 * 23.07456 * 20 19 18 22 22 C 1.53448 * 103.32034 * 23.79120 * 18 17 16 23 23 C 1.34595 * 124.33272 * 270.02067 * 16 15 14 24 24 O 1.21277 * 124.92773 * 0.29947 * 23 16 15 25 25 C 1.46846 * 111.19503 * 61.74989 * 14 13 12 26 26 H 0.96999 * 119.99511 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.52120 * 62.49890 * 11 9 7 28 28 H 1.09008 * 109.57090 * 302.34370 * 11 9 7 29 29 H 1.08999 * 109.50319 * 297.70918 * 12 11 9 30 30 H 1.09008 * 109.50003 * 177.59878 * 12 11 9 31 31 H 1.09005 * 109.46018 * 180.80447 * 13 12 11 32 32 H 1.08993 * 109.46575 * 60.84029 * 13 12 11 33 33 H 1.08995 * 109.47406 * 321.05045 * 15 14 13 34 34 H 1.09000 * 109.46951 * 201.04973 * 15 14 13 35 35 H 1.09002 * 110.31715 * 283.28835 * 17 16 15 36 36 H 1.09004 * 110.31788 * 45.37527 * 17 16 15 37 37 H 1.09005 * 113.94940 * 333.55532 * 19 18 17 38 38 H 1.08990 * 113.95375 * 105.54115 * 19 18 17 39 39 H 1.08997 * 113.94816 * 222.90651 * 21 20 19 40 40 H 1.09002 * 113.95004 * 90.93960 * 21 20 19 41 41 H 1.09002 * 110.53599 * 218.17962 * 22 18 17 42 42 H 1.09001 * 110.68765 * 95.42331 * 22 18 17 43 43 H 1.09006 * 109.46854 * 58.26938 * 25 14 13 44 44 H 1.09001 * 109.46420 * 178.23754 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6249 -2.5587 -0.8908 11 6 0.3707 -2.5813 1.2498 12 6 -0.3449 -3.9347 1.2725 13 6 0.6952 -5.0568 1.2401 14 7 1.5109 -4.9348 0.0252 15 6 2.4283 -6.0742 -0.1095 16 7 1.7080 -7.2167 -0.6770 17 6 1.5950 -7.4939 -2.1175 18 6 1.1256 -8.9476 -2.2104 19 6 2.1670 -9.9767 -2.6370 20 8 1.0890 -10.5647 -3.3987 21 6 0.3355 -9.3333 -3.4563 22 6 0.4388 -9.1844 -0.8588 23 6 1.0645 -8.1468 0.0527 24 8 0.9956 -8.1540 1.2635 25 6 2.2447 -3.6630 0.0039 26 1 -0.4849 0.8401 -0.0004 27 1 -0.3672 -1.7793 1.2291 28 1 0.9914 -2.4823 2.1404 29 1 -0.9961 -4.0167 0.4023 30 1 -0.9402 -4.0163 2.1821 31 1 0.1884 -6.0219 1.2418 32 1 1.3372 -4.9825 2.1177 33 1 2.8206 -6.3428 0.8713 34 1 3.2528 -5.8009 -0.7681 35 1 0.8616 -6.8294 -2.5744 36 1 2.5642 -7.3774 -2.6025 37 1 2.9694 -9.5663 -3.2501 38 1 2.5275 -10.6052 -1.8227 39 1 -0.7329 -9.4597 -3.2812 40 1 0.5576 -8.7189 -4.3288 41 1 0.6483 -10.1901 -0.4944 42 1 -0.6363 -9.0242 -0.9398 43 1 2.8796 -3.5951 0.8874 44 1 2.8635 -3.6156 -0.8922 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872624388.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:49 Heat of formation + Delta-G solvation = -35.547193 kcal Electronic energy + Delta-G solvation = -24591.745025 eV Core-core repulsion = 21124.310233 eV Total energy + Delta-G solvation = -3467.434792 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.66093 -39.46754 -37.90465 -35.98256 -33.85780 -32.25384 -30.77561 -29.81114 -28.40672 -27.06879 -26.16329 -24.98101 -24.41222 -22.08157 -21.31977 -19.69462 -19.60910 -18.60744 -16.99077 -16.82747 -16.46213 -16.16825 -15.84800 -15.58656 -14.99149 -14.71138 -14.43404 -14.14509 -13.64180 -13.44165 -13.33108 -13.26179 -12.86970 -12.50331 -12.36405 -12.19883 -12.06049 -11.81878 -11.38084 -11.12929 -10.98372 -10.92225 -10.70105 -10.68460 -10.22681 -10.07093 -9.87181 -9.68304 -9.50852 -9.28179 -8.75774 -8.68630 -8.33309 -7.76685 -5.99644 -4.06291 2.56222 2.97682 3.23380 3.28143 3.36463 3.39630 3.69616 3.94652 4.29805 4.37930 4.54412 4.57357 4.92375 4.95497 5.13741 5.19744 5.24009 5.30515 5.31490 5.38814 5.50257 5.53510 5.59928 5.66014 5.73412 5.80679 5.88304 6.05171 6.28590 6.33334 6.44627 6.51968 6.73851 6.75003 6.90807 7.11317 7.21021 7.36729 7.62241 7.70127 7.75842 8.04434 8.14474 8.19609 8.44873 8.97838 9.58281 11.06190 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026872 B = 0.003467 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.714604 B = 8074.597428 C = 8491.495917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.057 3.943 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.116 4.116 13 C 0.065 3.935 14 N -0.553 5.553 15 C 0.288 3.712 16 N -0.603 5.603 17 C 0.115 3.885 18 C -0.147 4.147 19 C 0.054 3.946 20 O -0.380 6.380 21 C 0.057 3.943 22 C -0.128 4.128 23 C 0.518 3.482 24 O -0.530 6.530 25 C 0.072 3.928 26 H 0.259 0.741 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.024 0.976 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.022 0.978 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 -17.806 -5.972 18.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.038 3.962 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.154 4.154 13 C -0.062 4.062 14 N -0.280 5.280 15 C 0.077 3.923 16 N -0.338 5.338 17 C -0.009 4.009 18 C -0.147 4.147 19 C -0.023 4.023 20 O -0.299 6.299 21 C -0.020 4.020 22 C -0.168 4.168 23 C 0.305 3.695 24 O -0.407 6.407 25 C -0.055 4.055 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.129 0.871 43 H 0.040 0.960 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.863 -17.875 -5.788 18.881 hybrid contribution 0.971 1.246 0.718 1.735 sum 2.834 -16.629 -5.069 17.614 Atomic orbital electron populations 1.69905 1.05856 1.26235 1.50608 1.24937 0.94823 0.98980 0.95090 0.86570 0.80103 0.83941 0.77554 1.19858 1.21041 1.21094 1.21170 0.92840 0.90615 1.50780 0.92766 1.18655 0.92530 0.90143 0.94893 0.94834 1.21659 1.00052 0.94734 0.98421 1.21674 0.97221 0.96464 1.00056 1.22083 0.95531 0.99172 0.89436 1.61785 1.24599 1.02440 1.39170 1.21776 0.90133 0.82550 0.97870 1.48525 1.53375 1.24988 1.06890 1.21949 1.02465 0.94203 0.82243 1.23726 0.97864 0.96215 0.96931 1.23869 0.90919 0.92812 0.94686 1.89777 1.33736 1.29267 1.77085 1.23803 0.97790 0.84879 0.95480 1.22063 1.01775 1.00390 0.92550 1.20875 0.77852 0.82913 0.87875 1.90729 1.60257 1.76586 1.13105 1.22289 0.96503 0.87893 0.98815 0.93096 0.89113 0.95132 0.92397 0.93583 0.91747 0.95802 0.92479 0.89430 0.89813 0.90031 0.89324 0.88818 0.88465 0.89139 0.87771 0.87129 0.95968 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 11.35 55.43 0.63 -24.48 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -13.87 8.56 -34.44 -0.29 -14.16 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 10 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 11 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 12 C -0.12 -2.39 6.09 -26.65 -0.16 -2.56 16 13 C 0.07 1.26 5.28 -3.83 -0.02 1.24 16 14 N -0.55 -10.09 4.75 -238.57 -1.13 -11.22 16 15 C 0.29 4.27 5.78 -63.32 -0.37 3.91 16 16 N -0.60 -7.78 3.16 -176.30 -0.56 -8.33 16 17 C 0.11 1.06 6.83 -3.67 -0.03 1.04 16 18 C -0.15 -1.16 1.16 -154.77 -0.18 -1.33 16 19 C 0.05 0.39 8.50 36.89 0.31 0.70 16 20 O -0.38 -3.52 12.46 -35.23 -0.44 -3.96 16 21 C 0.06 0.40 8.60 36.88 0.32 0.72 16 22 C -0.13 -1.22 6.32 -27.19 -0.17 -1.40 16 23 C 0.52 7.17 7.32 -10.61 -0.08 7.10 16 24 O -0.53 -9.47 16.12 5.56 0.09 -9.38 16 25 C 0.07 1.47 4.62 -3.83 -0.02 1.45 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 27 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 28 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.06 1.24 5.73 -51.93 -0.30 0.95 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.91 7.71 -51.93 -0.40 0.51 16 34 H 0.09 1.13 7.70 -51.93 -0.40 0.73 16 35 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 36 H 0.08 0.62 7.90 -51.93 -0.41 0.21 16 37 H 0.09 0.51 8.01 -51.93 -0.42 0.09 16 38 H 0.09 0.64 8.05 -51.93 -0.42 0.22 16 39 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.92 7.94 -51.93 -0.41 0.51 16 42 H 0.11 0.97 8.11 -51.93 -0.42 0.54 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 1.17 7.91 -51.93 -0.41 0.76 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -31.30 344.83 -9.60 -40.91 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -7.25 Total: -1.45 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.12 Total: -3.26 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -1.06 Total: -44.03 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.35 Total: -13.33 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.30 -9.60 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872624388.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.360 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds