Wall clock time and date at job start Fri Apr 10 2020 17:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00352 * 2 1 4 4 H 1.48495 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47007 * 300.00216 * 3 2 1 6 6 H 1.48506 * 109.46655 * 59.99841 * 3 2 1 7 7 C 1.37878 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00089 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.54033 * 60.10221 * 9 7 2 11 11 C 1.53126 * 109.50373 * 300.00256 * 9 7 2 12 12 C 1.53116 * 109.15991 * 182.40730 * 11 9 7 13 13 C 1.53036 * 109.27920 * 57.65662 * 12 11 9 14 14 N 1.46847 * 109.52029 * 300.81425 * 13 12 11 15 15 C 1.46903 * 110.99621 * 185.84046 * 14 13 12 16 16 N 1.46497 * 109.46940 * 81.05068 * 15 14 13 17 17 C 1.47133 * 124.32971 * 89.99854 * 16 15 14 18 18 C 1.53048 * 105.18574 * 164.33276 * 17 16 15 19 19 C 1.52501 * 116.64695 * 254.45829 * 18 17 16 20 20 O 1.44499 * 84.98596 * 219.55136 * 19 18 17 21 21 C 1.44487 * 93.62657 * 23.07456 * 20 19 18 22 22 C 1.53448 * 103.32034 * 23.79120 * 18 17 16 23 23 C 1.34595 * 124.33272 * 270.02067 * 16 15 14 24 24 O 1.21277 * 124.92773 * 0.29947 * 23 16 15 25 25 C 1.46846 * 111.19503 * 61.74989 * 14 13 12 26 26 H 0.96999 * 119.99511 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.52120 * 62.49890 * 11 9 7 28 28 H 1.09008 * 109.57090 * 302.34370 * 11 9 7 29 29 H 1.08999 * 109.50319 * 297.70918 * 12 11 9 30 30 H 1.09008 * 109.50003 * 177.59878 * 12 11 9 31 31 H 1.09005 * 109.46018 * 180.80447 * 13 12 11 32 32 H 1.08993 * 109.46575 * 60.84029 * 13 12 11 33 33 H 1.08995 * 109.47406 * 321.05045 * 15 14 13 34 34 H 1.09000 * 109.46951 * 201.04973 * 15 14 13 35 35 H 1.09002 * 110.31715 * 283.28835 * 17 16 15 36 36 H 1.09004 * 110.31788 * 45.37527 * 17 16 15 37 37 H 1.09005 * 113.94940 * 333.55532 * 19 18 17 38 38 H 1.08990 * 113.95375 * 105.54115 * 19 18 17 39 39 H 1.08997 * 113.94816 * 222.90651 * 21 20 19 40 40 H 1.09002 * 113.95004 * 90.93960 * 21 20 19 41 41 H 1.09002 * 110.53599 * 218.17962 * 22 18 17 42 42 H 1.09001 * 110.68765 * 95.42331 * 22 18 17 43 43 H 1.09006 * 109.46854 * 58.26938 * 25 14 13 44 44 H 1.09001 * 109.46420 * 178.23754 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6249 -2.5587 -0.8908 11 6 0.3707 -2.5813 1.2498 12 6 -0.3449 -3.9347 1.2725 13 6 0.6952 -5.0568 1.2401 14 7 1.5109 -4.9348 0.0252 15 6 2.4283 -6.0742 -0.1095 16 7 1.7080 -7.2167 -0.6770 17 6 1.5950 -7.4939 -2.1175 18 6 1.1256 -8.9476 -2.2104 19 6 2.1670 -9.9767 -2.6370 20 8 1.0890 -10.5647 -3.3987 21 6 0.3355 -9.3333 -3.4563 22 6 0.4388 -9.1844 -0.8588 23 6 1.0645 -8.1468 0.0527 24 8 0.9956 -8.1540 1.2635 25 6 2.2447 -3.6630 0.0039 26 1 -0.4849 0.8401 -0.0004 27 1 -0.3672 -1.7793 1.2291 28 1 0.9914 -2.4823 2.1404 29 1 -0.9961 -4.0167 0.4023 30 1 -0.9402 -4.0163 2.1821 31 1 0.1884 -6.0219 1.2418 32 1 1.3372 -4.9825 2.1177 33 1 2.8206 -6.3428 0.8713 34 1 3.2528 -5.8009 -0.7681 35 1 0.8616 -6.8294 -2.5744 36 1 2.5642 -7.3774 -2.6025 37 1 2.9694 -9.5663 -3.2501 38 1 2.5275 -10.6052 -1.8227 39 1 -0.7329 -9.4597 -3.2812 40 1 0.5576 -8.7189 -4.3288 41 1 0.6483 -10.1901 -0.4944 42 1 -0.6363 -9.0242 -0.9398 43 1 2.8796 -3.5951 0.8874 44 1 2.8635 -3.6156 -0.8922 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872624388.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:48 Heat of formation + Delta-G solvation = -56.753711 kcal Electronic energy + Delta-G solvation = -24592.664608 eV Core-core repulsion = 21124.310233 eV Total energy + Delta-G solvation = -3468.354376 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.39985 -40.49532 -39.43188 -37.07122 -35.54337 -33.81534 -32.06543 -31.61115 -29.21354 -27.58514 -27.28000 -26.93400 -25.41681 -23.67663 -23.04585 -20.69500 -20.46678 -20.26204 -18.50413 -17.72950 -17.70818 -17.13112 -16.79275 -16.53014 -16.46626 -15.87636 -15.71788 -15.62654 -15.12762 -14.67349 -14.56571 -14.37421 -14.16483 -14.09504 -13.85499 -13.48511 -12.91870 -12.88865 -12.86247 -12.76925 -12.56276 -12.46676 -11.88542 -11.83110 -11.76682 -11.59955 -11.43781 -11.04000 -10.99542 -10.68605 -10.54311 -10.39592 -9.90617 -9.26101 -8.07432 -6.21571 1.41489 1.43671 1.49671 1.54577 1.96925 2.43985 2.66384 3.08134 3.09150 3.20163 3.27262 3.50039 3.84937 4.04816 4.10336 4.20814 4.31443 4.37279 4.45503 4.47078 4.56718 4.58446 4.59680 4.65719 4.66405 4.70983 4.83920 4.85773 4.91739 4.98449 5.02288 5.11052 5.13129 5.20703 5.29752 5.41828 5.48922 5.63626 5.92665 6.02291 6.10881 6.18613 6.22809 6.43398 6.91096 7.11940 7.46700 8.97427 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026872 B = 0.003467 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.714604 B = 8074.597428 C = 8491.495917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.533 4.533 8 H 0.056 0.944 9 C 0.055 3.945 10 H 0.001 0.999 11 C -0.103 4.103 12 C -0.108 4.108 13 C 0.077 3.923 14 N -0.556 5.556 15 C 0.289 3.711 16 N -0.604 5.604 17 C 0.112 3.888 18 C -0.137 4.137 19 C 0.056 3.944 20 O -0.404 6.404 21 C 0.061 3.939 22 C -0.120 4.120 23 C 0.507 3.493 24 O -0.578 6.578 25 C 0.086 3.914 26 H 0.259 0.741 27 H 0.059 0.941 28 H 0.020 0.980 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.017 0.983 33 H 0.046 0.954 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.018 0.982 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.452 -18.745 -7.350 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.571 4.571 8 H 0.074 0.926 9 C 0.036 3.964 10 H 0.019 0.981 11 C -0.141 4.141 12 C -0.146 4.146 13 C -0.051 4.051 14 N -0.283 5.283 15 C 0.077 3.923 16 N -0.337 5.337 17 C -0.009 4.009 18 C -0.138 4.138 19 C -0.021 4.021 20 O -0.323 6.323 21 C -0.016 4.016 22 C -0.160 4.160 23 C 0.296 3.704 24 O -0.458 6.458 25 C -0.042 4.042 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.132 0.868 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.037 0.963 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.980 -18.838 -7.207 20.388 hybrid contribution 0.606 1.520 1.131 1.989 sum 3.586 -17.317 -6.076 18.700 Atomic orbital electron populations 1.70046 1.07247 1.26969 1.51318 1.25723 0.95613 1.02368 0.94817 0.85562 0.79194 0.79772 0.77437 1.18923 1.20618 1.21041 1.21539 0.93135 0.91888 1.50580 0.92593 1.18570 0.92920 0.91405 0.93486 0.98110 1.21475 0.99241 0.95615 0.97789 1.21566 0.97407 0.95147 1.00454 1.21910 0.95117 0.98336 0.89748 1.61751 1.25278 1.02766 1.38474 1.21782 0.90284 0.81847 0.98358 1.48616 1.52627 1.23909 1.08557 1.22185 1.03860 0.94977 0.79920 1.23680 0.98398 0.95344 0.96393 1.24028 0.90906 0.92279 0.94849 1.89767 1.34637 1.30521 1.77415 1.23972 0.98093 0.84108 0.95379 1.22046 1.02099 0.99271 0.92543 1.21622 0.77377 0.83694 0.87696 1.90696 1.61963 1.77821 1.15324 1.21982 0.95330 0.87555 0.99297 0.93138 0.92229 0.96068 0.93090 0.92186 0.91508 0.96510 0.93574 0.86829 0.90052 0.87656 0.87399 0.88601 0.87640 0.87372 0.86935 0.86167 0.96341 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.90 11.35 21.45 0.24 -52.66 16 2 C 0.01 0.74 5.30 84.66 0.45 1.19 16 3 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.53 -28.87 8.56 25.60 0.22 -28.65 16 8 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.06 2.75 2.26 -11.48 -0.03 2.73 16 10 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 11 C -0.10 -5.05 5.02 30.67 0.15 -4.90 16 12 C -0.11 -4.48 6.09 30.65 0.19 -4.30 16 13 C 0.08 2.94 5.28 86.33 0.46 3.39 16 14 N -0.56 -19.80 4.75 -908.71 -4.32 -24.12 16 15 C 0.29 8.10 5.78 170.81 0.99 9.09 16 16 N -0.60 -14.48 3.16 -830.19 -2.62 -17.10 16 17 C 0.11 1.76 6.83 86.27 0.59 2.35 16 18 C -0.14 -1.78 1.16 -52.35 -0.06 -1.84 16 19 C 0.06 0.64 8.50 71.81 0.61 1.25 16 20 O -0.40 -6.39 12.46 -148.98 -1.86 -8.25 16 21 C 0.06 0.67 8.60 71.80 0.62 1.28 16 22 C -0.12 -2.07 6.32 30.29 0.19 -1.88 16 23 C 0.51 13.50 7.32 87.98 0.64 14.15 16 24 O -0.58 -20.61 16.12 -3.02 -0.05 -20.66 16 25 C 0.09 3.46 4.62 86.33 0.40 3.86 16 26 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.06 3.29 6.15 -2.39 -0.01 3.28 16 28 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.07 2.56 5.73 -2.38 -0.01 2.55 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 1.42 7.71 -2.39 -0.02 1.40 16 34 H 0.11 2.60 7.70 -2.39 -0.02 2.58 16 35 H 0.08 1.37 8.13 -2.39 -0.02 1.35 16 36 H 0.11 1.19 7.90 -2.39 -0.02 1.17 16 37 H 0.11 0.84 8.01 -2.38 -0.02 0.82 16 38 H 0.10 1.06 8.05 -2.39 -0.02 1.04 16 39 H 0.11 0.97 8.10 -2.39 -0.02 0.95 16 40 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.11 1.78 7.94 -2.39 -0.02 1.76 16 42 H 0.12 1.86 8.11 -2.39 -0.02 1.84 16 43 H 0.02 0.75 8.14 -2.38 -0.02 0.74 16 44 H 0.07 2.77 7.91 -2.39 -0.02 2.75 16 Total: -1.00 -68.72 344.83 -0.19 -68.91 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.97 Total: 11.01 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 5.42 Total: -2.27 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -6.70 Total: -93.88 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -1.90 Total: -28.91 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -68.72 -0.19 -68.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872624388.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.155 kcal (2) G-P(sol) polarization free energy of solvation -68.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds