Wall clock time and date at job start Fri Apr 10 2020 17:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86791 * 120.00103 * 2 1 4 4 H 1.48494 * 109.47383 * 240.00024 * 3 2 1 5 5 H 1.48507 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47223 * 119.99698 * 3 2 1 7 7 C 1.40055 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99122 * 180.02562 * 7 2 1 9 9 C 1.46368 * 120.00118 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00308 * 351.94895 * 9 7 2 11 11 N 1.34782 * 119.99877 * 171.95093 * 9 7 2 12 12 C 1.47072 * 120.88258 * 174.80243 * 11 9 7 13 13 C 1.53234 * 108.52363 * 231.20479 * 12 11 9 14 14 N 1.46896 * 109.33889 * 306.17176 * 13 12 11 15 15 C 1.46900 * 111.00044 * 187.25268 * 14 13 12 16 16 C 1.53003 * 109.47158 * 169.99708 * 15 14 13 17 17 H 1.08996 * 115.56552 * 29.23158 * 16 15 14 18 18 C 1.53182 * 117.52071 * 243.36665 * 16 15 14 19 19 C 1.52110 * 117.52208 * 174.99791 * 16 15 14 20 20 C 1.53711 * 121.75236 * 218.51232 * 19 16 15 21 21 C 1.54690 * 103.69328 * 143.51861 * 20 19 16 22 22 O 1.44495 * 104.87670 * 23.83080 * 21 20 19 23 23 C 1.44639 * 105.46014 * 320.02552 * 22 21 20 24 24 C 1.46902 * 111.27283 * 63.10248 * 14 13 12 25 25 C 1.47078 * 120.88052 * 354.82150 * 11 9 7 26 26 H 0.96998 * 119.99877 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.62991 * 111.48974 * 12 11 9 28 28 H 1.09008 * 109.62907 * 350.91666 * 12 11 9 29 29 H 1.08996 * 109.49924 * 186.20909 * 13 12 11 30 30 H 1.09001 * 109.51578 * 66.14329 * 13 12 11 31 31 H 1.08996 * 109.47308 * 289.99935 * 15 14 13 32 32 H 1.09000 * 109.47627 * 50.00022 * 15 14 13 33 33 H 1.08994 * 117.52485 * 0.02562 * 18 16 15 34 34 H 1.09006 * 117.51709 * 145.15991 * 18 16 15 35 35 H 1.09004 * 110.57443 * 262.07232 * 20 19 16 36 36 H 1.09000 * 110.57787 * 24.96137 * 20 19 16 37 37 H 1.08998 * 110.36059 * 142.68508 * 21 20 19 38 38 H 1.09005 * 110.35792 * 264.98168 * 21 20 19 39 39 H 1.08994 * 110.41899 * 280.88535 * 23 22 21 40 40 H 1.09001 * 110.41621 * 158.42423 * 23 22 21 41 41 H 1.08996 * 109.49209 * 56.85675 * 24 14 13 42 42 H 1.09000 * 109.49430 * 176.93707 * 24 14 13 43 43 H 1.08998 * 109.62864 * 248.50729 * 25 11 9 44 44 H 1.09001 * 109.62799 * 9.08771 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 3.0944 1.6964 -1.2124 5 1 1.2757 2.7464 0.0006 6 1 3.0944 1.6963 1.2126 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0671 -2.4857 0.1477 11 7 1.9391 -3.6420 -0.1624 12 6 1.2415 -4.9322 -0.0527 13 6 2.0161 -5.8229 0.9244 14 7 3.4187 -5.9095 0.4963 15 6 4.1563 -6.8893 1.3050 16 6 5.5306 -7.1358 0.6792 17 1 5.9526 -6.2971 0.1256 18 6 5.8317 -8.5473 0.1660 19 6 6.4960 -8.0358 1.4353 20 6 8.0026 -7.7370 1.4947 21 6 8.4048 -8.1658 2.9255 22 8 7.4042 -9.1312 3.3186 23 6 6.1504 -8.6129 2.8172 24 6 4.0711 -4.5940 0.5387 25 6 3.3806 -3.6530 -0.4542 26 1 -0.4850 0.8400 -0.0004 27 1 1.2008 -5.4108 -1.0311 28 1 0.2304 -4.7711 0.3215 29 1 1.5766 -6.8202 0.9342 30 1 1.9671 -5.3940 1.9253 31 1 4.2817 -6.5044 2.3170 32 1 3.5993 -7.8256 1.3388 33 1 5.0506 -9.2998 0.2739 34 1 6.4519 -8.6373 -0.7259 35 1 8.5398 -8.3274 0.7524 36 1 8.1882 -6.6731 1.3470 37 1 9.3934 -8.6250 2.9200 38 1 8.3883 -7.3076 3.5974 39 1 5.7735 -7.8285 3.4735 40 1 5.4183 -9.4148 2.7221 41 1 3.9935 -4.1818 1.5447 42 1 5.1218 -4.7002 0.2688 43 1 3.5456 -4.0087 -1.4712 44 1 3.7838 -2.6462 -0.3454 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886230018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:55 Heat of formation + Delta-G solvation = -41.002535 kcal Electronic energy + Delta-G solvation = -24011.711746 eV Core-core repulsion = 20544.040392 eV Total energy + Delta-G solvation = -3467.671353 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26697 -38.80977 -37.06702 -35.91872 -33.24564 -32.48655 -30.81686 -30.57046 -28.17955 -27.32933 -26.25740 -24.27960 -23.22801 -22.83631 -21.25068 -20.52676 -19.34267 -18.77221 -16.80024 -16.46979 -16.14649 -15.83276 -15.41818 -15.17194 -14.78332 -14.54953 -14.29118 -14.15916 -13.80175 -13.71235 -13.52041 -12.82712 -12.62396 -12.49191 -12.32606 -11.76884 -11.71840 -11.67997 -11.41133 -11.26260 -11.13104 -10.92605 -10.90518 -10.72334 -10.48665 -10.25054 -10.23069 -9.99107 -9.94316 -9.80417 -8.87376 -8.17826 -7.60129 -7.20005 -6.21851 -4.66388 3.13473 3.18632 3.20121 3.33764 3.75019 3.95699 4.07612 4.15361 4.48904 4.53302 4.59308 4.60921 4.64425 4.84808 5.08545 5.20235 5.22774 5.34452 5.39274 5.43521 5.45004 5.50762 5.53230 5.59109 5.62656 5.65273 5.69259 5.77818 5.82061 5.85713 5.86274 6.06394 6.09444 6.27185 6.44969 6.48713 6.52758 6.71125 7.23728 7.27382 7.43463 7.60440 8.11335 8.35046 9.00080 9.42896 10.55857 10.74220 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024102 B = 0.003191 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.435429 B = 8773.743611 C = 9468.880444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.561 3.439 10 O -0.579 6.579 11 N -0.644 5.644 12 C 0.126 3.874 13 C 0.046 3.954 14 N -0.533 5.533 15 C 0.084 3.916 16 C -0.118 4.118 17 H 0.113 0.887 18 C -0.150 4.150 19 C -0.167 4.167 20 C -0.119 4.119 21 C 0.046 3.954 22 O -0.376 6.376 23 C 0.082 3.918 24 C 0.039 3.961 25 C 0.128 3.872 26 H 0.269 0.731 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.204 -14.590 2.674 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.367 3.633 10 O -0.462 6.462 11 N -0.383 5.383 12 C 0.002 3.998 13 C -0.083 4.083 14 N -0.258 5.258 15 C -0.044 4.044 16 C -0.137 4.137 17 H 0.131 0.869 18 C -0.187 4.187 19 C -0.168 4.168 20 C -0.156 4.156 21 C -0.030 4.030 22 O -0.295 6.295 23 C 0.005 3.995 24 C -0.089 4.089 25 C 0.003 3.997 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.359 -14.817 2.400 20.772 hybrid contribution 0.595 1.202 0.666 1.498 sum 14.955 -13.615 3.066 20.455 Atomic orbital electron populations 1.69995 1.07081 1.27446 1.35274 1.25724 0.94613 1.00284 0.92564 0.86453 0.79864 0.81118 0.79451 1.19208 1.20538 1.19286 1.20914 0.93481 0.89295 1.54555 0.91022 1.18242 0.86759 0.82215 0.76123 1.90587 1.14682 1.86016 1.54869 1.48244 1.07736 1.05246 1.77061 1.21191 0.96646 0.84656 0.97340 1.22516 0.88180 0.99828 0.97787 1.61918 1.02207 1.07947 1.53687 1.21630 0.92167 0.96417 0.94170 1.22331 0.95138 0.94621 1.01601 0.86869 1.23031 1.02475 0.97222 0.95994 1.22302 0.94331 1.05625 0.94528 1.22389 0.93209 1.02198 0.97849 1.23422 0.92957 0.92516 0.94136 1.89151 1.16965 1.45191 1.78174 1.22769 0.87127 0.98270 0.91300 1.22622 0.98000 0.88870 0.99438 1.21490 0.82611 0.99324 0.96285 0.92004 0.93253 0.89685 0.90887 0.94817 0.94715 0.90836 0.88481 0.88596 0.90437 0.90174 0.89143 0.92180 0.91741 0.89084 0.94675 0.90740 0.93259 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.99 11.86 55.55 0.66 -22.33 16 2 C 0.09 2.43 5.50 -17.36 -0.10 2.34 16 3 Si 0.91 19.87 29.56 -169.99 -5.02 14.85 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 7 C -0.55 -15.19 8.85 -35.63 -0.32 -15.50 16 8 H 0.07 1.80 5.73 -52.49 -0.30 1.50 16 9 C 0.56 15.99 7.61 -12.99 -0.10 15.89 16 10 O -0.58 -18.78 14.55 5.20 0.08 -18.70 16 11 N -0.64 -14.77 3.01 -174.13 -0.52 -15.29 16 12 C 0.13 2.50 6.58 -3.61 -0.02 2.48 16 13 C 0.05 0.73 5.62 -3.71 -0.02 0.71 16 14 N -0.53 -7.72 4.63 -234.33 -1.08 -8.80 16 15 C 0.08 0.97 4.59 -3.82 -0.02 0.95 16 16 C -0.12 -1.19 5.55 -90.98 -0.50 -1.70 16 17 H 0.11 1.20 6.33 -51.93 -0.33 0.87 16 18 C -0.15 -1.35 9.94 -27.08 -0.27 -1.62 16 19 C -0.17 -1.52 2.50 -154.68 -0.39 -1.91 16 20 C -0.12 -0.95 6.88 -25.47 -0.18 -1.13 16 21 C 0.05 0.38 7.65 38.05 0.29 0.68 16 22 O -0.38 -4.12 11.65 -35.23 -0.41 -4.53 16 23 C 0.08 0.78 6.72 37.51 0.25 1.03 16 24 C 0.04 0.60 5.47 -3.70 -0.02 0.58 16 25 C 0.13 2.38 6.52 -3.60 -0.02 2.36 16 26 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.86 7.10 -51.92 -0.37 1.49 16 29 H 0.07 0.98 7.99 -51.93 -0.41 0.57 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.41 7.78 -51.93 -0.40 0.01 16 32 H 0.07 0.79 7.71 -51.93 -0.40 0.38 16 33 H 0.10 0.83 8.04 -51.93 -0.42 0.42 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.61 7.80 -51.93 -0.40 0.20 16 40 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.95 6.12 -51.93 -0.32 0.64 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.82 5.38 -51.93 -0.28 1.54 16 LS Contribution 346.22 15.07 5.22 5.22 Total: -1.00 -33.96 346.22 -9.50 -43.46 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.00 Total: 0.98 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -1.41 Total: 5.16 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.95 Total: -46.42 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.33 Total: -23.23 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.96 -9.50 -43.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886230018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.454 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds