Wall clock time and date at job start Fri Apr 10 2020 17:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86791 * 120.00103 * 2 1 4 4 H 1.48494 * 109.47383 * 240.00024 * 3 2 1 5 5 H 1.48507 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47223 * 119.99698 * 3 2 1 7 7 C 1.40055 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99122 * 180.02562 * 7 2 1 9 9 C 1.46368 * 120.00118 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00308 * 351.94895 * 9 7 2 11 11 N 1.34782 * 119.99877 * 171.95093 * 9 7 2 12 12 C 1.47072 * 120.88258 * 174.80243 * 11 9 7 13 13 C 1.53234 * 108.52363 * 231.20479 * 12 11 9 14 14 N 1.46896 * 109.33889 * 306.17176 * 13 12 11 15 15 C 1.46900 * 111.00044 * 187.25268 * 14 13 12 16 16 C 1.53003 * 109.47158 * 169.99708 * 15 14 13 17 17 H 1.08996 * 115.56552 * 29.23158 * 16 15 14 18 18 C 1.53182 * 117.52071 * 243.36665 * 16 15 14 19 19 C 1.52110 * 117.52208 * 174.99791 * 16 15 14 20 20 C 1.53711 * 121.75236 * 218.51232 * 19 16 15 21 21 C 1.54690 * 103.69328 * 143.51861 * 20 19 16 22 22 O 1.44495 * 104.87670 * 23.83080 * 21 20 19 23 23 C 1.44639 * 105.46014 * 320.02552 * 22 21 20 24 24 C 1.46902 * 111.27283 * 63.10248 * 14 13 12 25 25 C 1.47078 * 120.88052 * 354.82150 * 11 9 7 26 26 H 0.96998 * 119.99877 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.62991 * 111.48974 * 12 11 9 28 28 H 1.09008 * 109.62907 * 350.91666 * 12 11 9 29 29 H 1.08996 * 109.49924 * 186.20909 * 13 12 11 30 30 H 1.09001 * 109.51578 * 66.14329 * 13 12 11 31 31 H 1.08996 * 109.47308 * 289.99935 * 15 14 13 32 32 H 1.09000 * 109.47627 * 50.00022 * 15 14 13 33 33 H 1.08994 * 117.52485 * 0.02562 * 18 16 15 34 34 H 1.09006 * 117.51709 * 145.15991 * 18 16 15 35 35 H 1.09004 * 110.57443 * 262.07232 * 20 19 16 36 36 H 1.09000 * 110.57787 * 24.96137 * 20 19 16 37 37 H 1.08998 * 110.36059 * 142.68508 * 21 20 19 38 38 H 1.09005 * 110.35792 * 264.98168 * 21 20 19 39 39 H 1.08994 * 110.41899 * 280.88535 * 23 22 21 40 40 H 1.09001 * 110.41621 * 158.42423 * 23 22 21 41 41 H 1.08996 * 109.49209 * 56.85675 * 24 14 13 42 42 H 1.09000 * 109.49430 * 176.93707 * 24 14 13 43 43 H 1.08998 * 109.62864 * 248.50729 * 25 11 9 44 44 H 1.09001 * 109.62799 * 9.08771 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 3.0944 1.6964 -1.2124 5 1 1.2757 2.7464 0.0006 6 1 3.0944 1.6963 1.2126 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0671 -2.4857 0.1477 11 7 1.9391 -3.6420 -0.1624 12 6 1.2415 -4.9322 -0.0527 13 6 2.0161 -5.8229 0.9244 14 7 3.4187 -5.9095 0.4963 15 6 4.1563 -6.8893 1.3050 16 6 5.5306 -7.1358 0.6792 17 1 5.9526 -6.2971 0.1256 18 6 5.8317 -8.5473 0.1660 19 6 6.4960 -8.0358 1.4353 20 6 8.0026 -7.7370 1.4947 21 6 8.4048 -8.1658 2.9255 22 8 7.4042 -9.1312 3.3186 23 6 6.1504 -8.6129 2.8172 24 6 4.0711 -4.5940 0.5387 25 6 3.3806 -3.6530 -0.4542 26 1 -0.4850 0.8400 -0.0004 27 1 1.2008 -5.4108 -1.0311 28 1 0.2304 -4.7711 0.3215 29 1 1.5766 -6.8202 0.9342 30 1 1.9671 -5.3940 1.9253 31 1 4.2817 -6.5044 2.3170 32 1 3.5993 -7.8256 1.3388 33 1 5.0506 -9.2998 0.2739 34 1 6.4519 -8.6373 -0.7259 35 1 8.5398 -8.3274 0.7524 36 1 8.1882 -6.6731 1.3470 37 1 9.3934 -8.6250 2.9200 38 1 8.3883 -7.3076 3.5974 39 1 5.7735 -7.8285 3.4735 40 1 5.4183 -9.4148 2.7221 41 1 3.9935 -4.1818 1.5447 42 1 5.1218 -4.7002 0.2688 43 1 3.5456 -4.0087 -1.4712 44 1 3.7838 -2.6462 -0.3454 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886230018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:55 Heat of formation + Delta-G solvation = -65.160857 kcal Electronic energy + Delta-G solvation = -24012.759329 eV Core-core repulsion = 20544.040392 eV Total energy + Delta-G solvation = -3468.718937 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.05437 -40.28900 -38.53240 -37.12553 -34.92557 -34.55402 -32.18981 -31.38295 -29.50776 -28.40281 -27.86566 -25.59805 -24.61392 -23.54478 -22.66448 -21.62233 -20.49544 -20.08123 -18.53864 -17.85454 -17.21134 -16.93734 -16.49404 -16.18756 -16.08201 -15.96477 -15.84506 -15.56518 -15.29589 -14.73972 -14.45408 -14.38698 -13.72787 -13.67382 -13.36938 -13.21319 -13.10536 -12.90579 -12.72968 -12.66517 -12.42308 -12.33789 -12.21449 -12.00304 -11.98210 -11.86939 -11.59720 -10.94035 -10.92393 -10.72134 -10.54606 -9.80547 -9.44565 -9.01098 -8.29943 -6.84493 1.39679 1.43200 1.54772 2.23317 2.45082 2.53605 2.80506 3.03535 3.08097 3.43613 3.58660 3.79199 3.80973 3.95569 4.05477 4.12088 4.18073 4.25617 4.33556 4.41593 4.45035 4.53748 4.59312 4.66336 4.68697 4.72723 4.78578 4.81299 4.83736 4.88143 4.90473 4.96300 4.98274 5.06523 5.16304 5.19588 5.31594 5.37957 5.73413 5.81434 6.01338 6.10627 6.13967 6.41203 6.87160 7.41914 8.45517 8.66514 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024102 B = 0.003191 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.435429 B = 8773.743611 C = 9468.880444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.250 1.250 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.570 4.570 8 H 0.095 0.905 9 C 0.541 3.459 10 O -0.635 6.635 11 N -0.648 5.648 12 C 0.123 3.877 13 C 0.058 3.942 14 N -0.532 5.532 15 C 0.088 3.912 16 C -0.124 4.124 17 H 0.112 0.888 18 C -0.145 4.145 19 C -0.163 4.163 20 C -0.117 4.117 21 C 0.041 3.959 22 O -0.399 6.399 23 C 0.078 3.922 24 C 0.050 3.950 25 C 0.123 3.877 26 H 0.274 0.726 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.017 0.983 31 H 0.032 0.968 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.020 0.980 42 H 0.108 0.892 43 H 0.062 0.938 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.236 -15.113 2.410 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.174 1.174 5 H -0.201 1.201 6 H -0.179 1.179 7 C -0.606 4.606 8 H 0.112 0.888 9 C 0.347 3.653 10 O -0.522 6.522 11 N -0.385 5.385 12 C -0.001 4.001 13 C -0.070 4.070 14 N -0.257 5.257 15 C -0.040 4.040 16 C -0.143 4.143 17 H 0.130 0.870 18 C -0.182 4.182 19 C -0.164 4.164 20 C -0.155 4.155 21 C -0.035 4.035 22 O -0.318 6.318 23 C 0.002 3.998 24 C -0.078 4.078 25 C 0.000 4.000 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.038 0.962 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.454 -15.401 2.131 23.375 hybrid contribution -0.336 1.246 0.738 1.487 sum 17.118 -14.155 2.869 22.397 Atomic orbital electron populations 1.70182 1.09635 1.29003 1.36670 1.27017 0.95496 1.05021 0.91147 0.85093 0.78246 0.74700 0.80425 1.17407 1.20103 1.17857 1.21454 0.94781 0.89744 1.54634 0.88766 1.18685 0.86425 0.84221 0.75945 1.90532 1.16968 1.87332 1.57383 1.48145 1.09591 1.04930 1.75853 1.21298 0.95738 0.84166 0.98879 1.22335 0.89139 1.00172 0.95390 1.61910 1.01486 1.07928 1.54391 1.21667 0.92859 0.95788 0.93646 1.22206 0.94410 0.95285 1.02379 0.87017 1.23118 1.02516 0.96337 0.96217 1.22311 0.94808 1.04902 0.94353 1.22417 0.92428 1.02825 0.97802 1.23598 0.93122 0.92426 0.94401 1.89128 1.17844 1.46242 1.78611 1.22834 0.86993 0.98465 0.91538 1.22497 0.99335 0.88538 0.97465 1.21681 0.80179 1.00119 0.98014 0.91612 0.92222 0.92789 0.87801 0.96447 0.94964 0.89595 0.88009 0.87741 0.89629 0.89444 0.87717 0.91834 0.91967 0.88529 0.96202 0.87390 0.92022 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -51.03 11.86 21.84 0.26 -50.77 16 2 C 0.03 1.56 5.50 85.31 0.47 2.03 16 3 Si 1.00 40.64 29.56 68.60 2.03 42.66 16 4 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 5 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 7 C -0.57 -32.24 8.85 24.83 0.22 -32.02 16 8 H 0.09 4.71 5.73 -2.91 -0.02 4.69 16 9 C 0.54 32.05 7.61 86.36 0.66 32.70 16 10 O -0.63 -43.49 14.55 -4.32 -0.06 -43.55 16 11 N -0.65 -30.31 3.01 -823.05 -2.48 -32.79 16 12 C 0.12 4.98 6.58 86.35 0.57 5.54 16 13 C 0.06 1.81 5.62 86.38 0.49 2.30 16 14 N -0.53 -14.28 4.63 -895.29 -4.14 -18.42 16 15 C 0.09 1.79 4.59 86.30 0.40 2.18 16 16 C -0.12 -2.13 5.55 -11.03 -0.06 -2.19 16 17 H 0.11 1.97 6.33 -2.39 -0.02 1.96 16 18 C -0.15 -2.15 9.94 30.37 0.30 -1.85 16 19 C -0.16 -2.52 2.50 -52.30 -0.13 -2.65 16 20 C -0.12 -1.55 6.88 31.41 0.22 -1.33 16 21 C 0.04 0.59 7.65 72.56 0.56 1.14 16 22 O -0.40 -8.04 11.65 -148.98 -1.74 -9.77 16 23 C 0.08 1.33 6.72 72.21 0.49 1.82 16 24 C 0.05 1.45 5.47 86.38 0.47 1.92 16 25 C 0.12 4.50 6.52 86.35 0.56 5.06 16 26 H 0.27 15.38 8.29 -92.71 -0.77 14.61 16 27 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.05 2.50 7.10 -2.38 -0.02 2.48 16 29 H 0.10 2.59 7.99 -2.39 -0.02 2.57 16 30 H 0.02 0.59 8.14 -2.39 -0.02 0.58 16 31 H 0.03 0.69 7.78 -2.39 -0.02 0.68 16 32 H 0.09 1.57 7.71 -2.39 -0.02 1.55 16 33 H 0.10 1.42 8.04 -2.39 -0.02 1.41 16 34 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.06 1.07 7.80 -2.39 -0.02 1.05 16 40 H 0.10 1.49 8.12 -2.39 -0.02 1.47 16 41 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.11 2.42 6.12 -2.39 -0.01 2.41 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.09 3.26 5.38 -2.39 -0.01 3.25 16 Total: -1.00 -77.11 346.22 0.05 -77.06 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.99 Total: 20.92 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 5.20 Total: 14.66 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -6.36 Total: -101.99 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -1.80 Total: -53.32 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.66 kcal Total: -77.11 0.05 -77.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886230018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.898 kcal (2) G-P(sol) polarization free energy of solvation -77.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds