Wall clock time and date at job start Fri Apr 10 2020 17:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48498 * 109.47299 * 270.00499 * 3 2 1 5 5 H 1.48502 * 109.47021 * 30.00228 * 3 2 1 6 6 H 1.48498 * 109.47111 * 150.00120 * 3 2 1 7 7 C 1.40047 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00591 * 179.97438 * 7 2 1 9 9 C 1.46381 * 119.99552 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00151 * 352.10299 * 9 7 2 11 11 N 1.34774 * 119.99639 * 172.37779 * 9 7 2 12 12 C 1.47076 * 120.88274 * 184.20049 * 11 9 7 13 13 C 1.53700 * 108.27890 * 128.75383 * 12 11 9 14 14 N 1.46899 * 109.25116 * 54.08582 * 13 12 11 15 15 C 1.46901 * 110.99818 * 172.61039 * 14 13 12 16 16 C 1.53005 * 109.47184 * 294.30243 * 15 14 13 17 17 H 1.09006 * 115.55747 * 330.61181 * 16 15 14 18 18 C 1.53184 * 117.52374 * 116.38920 * 16 15 14 19 19 C 1.52107 * 117.52508 * 184.75897 * 16 15 14 20 20 C 1.53717 * 121.73432 * 3.67272 * 19 16 15 21 21 C 1.54696 * 103.69110 * 143.46884 * 20 19 16 22 22 O 1.44499 * 104.87073 * 23.84373 * 21 20 19 23 23 C 1.44633 * 105.46501 * 320.02610 * 22 21 20 24 24 C 1.46904 * 111.27092 * 296.75477 * 14 13 12 25 25 C 1.47084 * 120.88423 * 4.48248 * 11 9 7 26 26 H 0.97002 * 120.00317 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.63463 * 248.52546 * 12 11 9 28 28 H 1.09007 * 109.62896 * 9.10696 * 12 11 9 29 29 H 1.09000 * 109.65196 * 294.08507 * 13 12 11 30 30 H 1.08993 * 109.42067 * 173.95068 * 13 12 11 31 31 H 1.08996 * 109.47570 * 54.29922 * 15 14 13 32 32 H 1.08994 * 109.47427 * 174.30317 * 15 14 13 33 33 H 1.09002 * 117.51788 * 214.84407 * 18 16 15 34 34 H 1.08998 * 117.51898 * 359.95123 * 18 16 15 35 35 H 1.08995 * 110.57684 * 262.02067 * 20 19 16 36 36 H 1.09002 * 110.57853 * 24.91969 * 20 19 16 37 37 H 1.09004 * 110.35963 * 142.69389 * 21 20 19 38 38 H 1.08999 * 110.36205 * 264.99947 * 21 20 19 39 39 H 1.09005 * 110.41315 * 280.87458 * 23 22 21 40 40 H 1.08996 * 110.42069 * 158.42031 * 23 22 21 41 41 H 1.08998 * 109.49167 * 303.15037 * 24 14 13 42 42 H 1.08996 * 109.48967 * 183.06779 * 24 14 13 43 43 H 1.08999 * 109.62386 * 350.89403 * 25 11 9 44 44 H 1.08997 * 109.62901 * 111.47127 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4880 2.0466 -1.4000 5 1 1.4380 2.6527 0.7001 6 1 3.5382 1.4403 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0670 -2.4855 0.1447 11 7 1.9401 -3.6424 -0.1559 12 6 1.2165 -4.9194 -0.2508 13 6 1.7144 -5.6639 -1.4998 14 7 3.1775 -5.7824 -1.4420 15 6 3.6796 -6.6380 -2.5255 16 6 3.1823 -8.0699 -2.3167 17 1 3.0143 -8.3630 -1.2803 18 6 2.2470 -8.6563 -3.3787 19 6 3.6870 -9.1363 -3.2768 20 6 4.7237 -8.8181 -4.3662 21 6 5.5982 -10.0929 -4.4230 22 8 4.7531 -11.1455 -3.9073 23 6 4.0343 -10.5552 -2.7997 24 6 3.8208 -4.4621 -1.4728 25 6 3.4089 -3.6678 -0.2289 26 1 -0.4851 0.8400 0.0004 27 1 1.4125 -5.5183 0.6386 28 1 0.1469 -4.7286 -0.3388 29 1 1.4295 -5.1103 -2.3945 30 1 1.2698 -6.6586 -1.5301 31 1 3.3164 -6.2633 -3.4824 32 1 4.7694 -6.6277 -2.5212 33 1 1.4646 -9.3359 -3.0409 34 1 1.9856 -8.0216 -4.2254 35 1 4.2327 -8.6472 -5.3242 36 1 5.3244 -7.9538 -4.0827 37 1 5.8877 -10.3087 -5.4515 38 1 6.4820 -9.9748 -3.7961 39 1 4.6680 -10.5141 -1.9138 40 1 3.1253 -11.1197 -2.5922 41 1 3.5064 -3.9252 -2.3678 42 1 4.9037 -4.5854 -1.4836 43 1 3.7894 -2.6491 -0.3023 44 1 3.8115 -4.1487 0.6626 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886230021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:02 Heat of formation + Delta-G solvation = -42.264557 kcal Electronic energy + Delta-G solvation = -23972.566408 eV Core-core repulsion = 20504.840329 eV Total energy + Delta-G solvation = -3467.726079 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27359 -38.78819 -37.09092 -35.89471 -33.20808 -32.48146 -30.68676 -30.52395 -28.60084 -27.08391 -26.20383 -24.18890 -23.19039 -22.92544 -21.14148 -20.70615 -19.17290 -18.79370 -16.87561 -16.44002 -16.20275 -15.75932 -15.45178 -15.22267 -14.69879 -14.42152 -14.26214 -14.17934 -14.02808 -13.74946 -13.19383 -12.88657 -12.62308 -12.46474 -12.42704 -11.76805 -11.73350 -11.52908 -11.44176 -11.27549 -11.11857 -11.00094 -10.85736 -10.73090 -10.47679 -10.23241 -10.20207 -10.00757 -9.95583 -9.79670 -8.88084 -8.19788 -7.59595 -7.19375 -6.22126 -4.66353 3.11530 3.18755 3.21899 3.35409 3.74150 3.89272 4.07121 4.22428 4.42650 4.54707 4.59234 4.61643 4.70452 4.84486 5.14307 5.16348 5.28052 5.35987 5.38248 5.40157 5.43694 5.49771 5.54772 5.59471 5.62790 5.68541 5.71680 5.80411 5.82633 5.87705 5.90391 6.10295 6.11057 6.26319 6.45660 6.48353 6.53159 6.71162 7.25023 7.29059 7.43490 7.60736 8.11973 8.35269 9.00204 9.43109 10.55849 10.74300 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035887 B = 0.002925 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.036938 B = 9571.268426 C =10002.376304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.560 3.440 10 O -0.579 6.579 11 N -0.644 5.644 12 C 0.126 3.874 13 C 0.047 3.953 14 N -0.534 5.534 15 C 0.086 3.914 16 C -0.118 4.118 17 H 0.117 0.883 18 C -0.160 4.160 19 C -0.162 4.162 20 C -0.121 4.121 21 C 0.047 3.953 22 O -0.377 6.377 23 C 0.083 3.917 24 C 0.042 3.958 25 C 0.128 3.872 26 H 0.268 0.732 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.832 -16.122 -7.580 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.366 3.634 10 O -0.462 6.462 11 N -0.383 5.383 12 C 0.001 3.999 13 C -0.082 4.082 14 N -0.259 5.259 15 C -0.042 4.042 16 C -0.136 4.136 17 H 0.135 0.865 18 C -0.197 4.197 19 C -0.163 4.163 20 C -0.158 4.158 21 C -0.029 4.029 22 O -0.295 6.295 23 C 0.006 3.994 24 C -0.087 4.087 25 C 0.003 3.997 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.073 -16.428 -7.126 20.546 hybrid contribution 0.353 1.349 -0.812 1.613 sum 10.425 -15.079 -7.938 19.977 Atomic orbital electron populations 1.70007 1.07086 1.27322 1.35410 1.25726 0.94608 1.00298 0.92566 0.86395 0.80230 0.81493 0.78793 1.19792 1.20424 1.18822 1.20958 0.93544 0.89270 1.54411 0.90941 1.18254 0.86822 0.82195 0.76123 1.90585 1.14864 1.86071 1.54631 1.48251 1.04920 1.06058 1.79082 1.21298 0.97943 0.85618 0.95038 1.22595 0.87142 0.99867 0.98611 1.61943 1.06138 1.13299 1.44530 1.21611 0.99421 0.90520 0.92606 1.22284 1.01942 0.92994 0.96412 0.86539 1.23122 0.91786 1.03316 1.01502 1.22261 0.97057 0.96080 1.00928 1.22379 0.96504 0.98699 0.98259 1.23420 0.93324 0.86429 0.99763 1.89150 1.57907 1.34398 1.48078 1.22791 0.96477 0.90599 0.89501 1.22554 0.98161 0.88687 0.99264 1.21490 0.82894 1.00282 0.95047 0.92077 0.93366 0.89750 0.94931 0.90683 0.94935 0.90700 0.88446 0.88641 0.90502 0.90073 0.89175 0.92161 0.91623 0.89086 0.94601 0.90881 0.88662 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.99 11.86 55.55 0.66 -22.33 16 2 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 19.87 29.56 -169.99 -5.02 14.84 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.55 -15.16 8.86 -35.63 -0.32 -15.48 16 8 H 0.07 1.83 5.71 -52.49 -0.30 1.53 16 9 C 0.56 15.98 7.62 -12.99 -0.10 15.88 16 10 O -0.58 -18.79 14.54 5.20 0.08 -18.71 16 11 N -0.64 -14.77 3.00 -173.84 -0.52 -15.30 16 12 C 0.13 2.50 6.61 -3.36 -0.02 2.47 16 13 C 0.05 0.75 5.49 -3.46 -0.02 0.73 16 14 N -0.53 -7.74 4.63 -234.03 -1.08 -8.82 16 15 C 0.09 0.99 4.41 -3.82 -0.02 0.98 16 16 C -0.12 -1.19 4.57 -90.98 -0.42 -1.61 16 17 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.16 -1.51 9.94 -27.08 -0.27 -1.78 16 19 C -0.16 -1.48 2.50 -154.69 -0.39 -1.87 16 20 C -0.12 -0.99 6.50 -25.47 -0.17 -1.16 16 21 C 0.05 0.38 7.65 38.05 0.29 0.67 16 22 O -0.38 -4.01 11.65 -35.23 -0.41 -4.42 16 23 C 0.08 0.75 7.44 37.51 0.28 1.03 16 24 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 25 C 0.13 2.38 6.51 -3.60 -0.02 2.35 16 26 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.86 7.09 -51.93 -0.37 1.50 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.05 7.06 -51.93 -0.37 0.68 16 31 H 0.03 0.39 7.86 -51.93 -0.41 -0.02 16 32 H 0.07 0.79 7.25 -51.93 -0.38 0.42 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 0.92 8.04 -51.93 -0.42 0.50 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.62 6.90 -51.93 -0.36 0.27 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.93 7.99 -51.93 -0.41 0.52 16 43 H 0.10 1.83 5.38 -51.93 -0.28 1.55 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -33.90 346.89 -9.43 -43.33 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.07 Total: 1.00 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.28 Total: 5.18 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.95 Total: -46.45 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.33 Total: -23.14 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.90 -9.43 -43.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886230021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.064 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds