Wall clock time and date at job start Fri Apr 10 2020 17:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48498 * 109.47299 * 270.00499 * 3 2 1 5 5 H 1.48502 * 109.47021 * 30.00228 * 3 2 1 6 6 H 1.48498 * 109.47111 * 150.00120 * 3 2 1 7 7 C 1.40047 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00591 * 179.97438 * 7 2 1 9 9 C 1.46381 * 119.99552 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00151 * 352.10299 * 9 7 2 11 11 N 1.34774 * 119.99639 * 172.37779 * 9 7 2 12 12 C 1.47076 * 120.88274 * 184.20049 * 11 9 7 13 13 C 1.53700 * 108.27890 * 128.75383 * 12 11 9 14 14 N 1.46899 * 109.25116 * 54.08582 * 13 12 11 15 15 C 1.46901 * 110.99818 * 172.61039 * 14 13 12 16 16 C 1.53005 * 109.47184 * 294.30243 * 15 14 13 17 17 H 1.09006 * 115.55747 * 330.61181 * 16 15 14 18 18 C 1.53184 * 117.52374 * 116.38920 * 16 15 14 19 19 C 1.52107 * 117.52508 * 184.75897 * 16 15 14 20 20 C 1.53717 * 121.73432 * 3.67272 * 19 16 15 21 21 C 1.54696 * 103.69110 * 143.46884 * 20 19 16 22 22 O 1.44499 * 104.87073 * 23.84373 * 21 20 19 23 23 C 1.44633 * 105.46501 * 320.02610 * 22 21 20 24 24 C 1.46904 * 111.27092 * 296.75477 * 14 13 12 25 25 C 1.47084 * 120.88423 * 4.48248 * 11 9 7 26 26 H 0.97002 * 120.00317 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.63463 * 248.52546 * 12 11 9 28 28 H 1.09007 * 109.62896 * 9.10696 * 12 11 9 29 29 H 1.09000 * 109.65196 * 294.08507 * 13 12 11 30 30 H 1.08993 * 109.42067 * 173.95068 * 13 12 11 31 31 H 1.08996 * 109.47570 * 54.29922 * 15 14 13 32 32 H 1.08994 * 109.47427 * 174.30317 * 15 14 13 33 33 H 1.09002 * 117.51788 * 214.84407 * 18 16 15 34 34 H 1.08998 * 117.51898 * 359.95123 * 18 16 15 35 35 H 1.08995 * 110.57684 * 262.02067 * 20 19 16 36 36 H 1.09002 * 110.57853 * 24.91969 * 20 19 16 37 37 H 1.09004 * 110.35963 * 142.69389 * 21 20 19 38 38 H 1.08999 * 110.36205 * 264.99947 * 21 20 19 39 39 H 1.09005 * 110.41315 * 280.87458 * 23 22 21 40 40 H 1.08996 * 110.42069 * 158.42031 * 23 22 21 41 41 H 1.08998 * 109.49167 * 303.15037 * 24 14 13 42 42 H 1.08996 * 109.48967 * 183.06779 * 24 14 13 43 43 H 1.08999 * 109.62386 * 350.89403 * 25 11 9 44 44 H 1.08997 * 109.62901 * 111.47127 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4880 2.0466 -1.4000 5 1 1.4380 2.6527 0.7001 6 1 3.5382 1.4403 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0670 -2.4855 0.1447 11 7 1.9401 -3.6424 -0.1559 12 6 1.2165 -4.9194 -0.2508 13 6 1.7144 -5.6639 -1.4998 14 7 3.1775 -5.7824 -1.4420 15 6 3.6796 -6.6380 -2.5255 16 6 3.1823 -8.0699 -2.3167 17 1 3.0143 -8.3630 -1.2803 18 6 2.2470 -8.6563 -3.3787 19 6 3.6870 -9.1363 -3.2768 20 6 4.7237 -8.8181 -4.3662 21 6 5.5982 -10.0929 -4.4230 22 8 4.7531 -11.1455 -3.9073 23 6 4.0343 -10.5552 -2.7997 24 6 3.8208 -4.4621 -1.4728 25 6 3.4089 -3.6678 -0.2289 26 1 -0.4851 0.8400 0.0004 27 1 1.4125 -5.5183 0.6386 28 1 0.1469 -4.7286 -0.3388 29 1 1.4295 -5.1103 -2.3945 30 1 1.2698 -6.6586 -1.5301 31 1 3.3164 -6.2633 -3.4824 32 1 4.7694 -6.6277 -2.5212 33 1 1.4646 -9.3359 -3.0409 34 1 1.9856 -8.0216 -4.2254 35 1 4.2327 -8.6472 -5.3242 36 1 5.3244 -7.9538 -4.0827 37 1 5.8877 -10.3087 -5.4515 38 1 6.4820 -9.9748 -3.7961 39 1 4.6680 -10.5141 -1.9138 40 1 3.1253 -11.1197 -2.5922 41 1 3.5064 -3.9252 -2.3678 42 1 4.9037 -4.5854 -1.4836 43 1 3.7894 -2.6491 -0.3023 44 1 3.8115 -4.1487 0.6626 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886230021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:01 Heat of formation + Delta-G solvation = -66.381896 kcal Electronic energy + Delta-G solvation = -23973.612214 eV Core-core repulsion = 20504.840329 eV Total energy + Delta-G solvation = -3468.771885 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.06389 -40.27051 -38.53876 -37.13375 -34.90315 -34.53343 -32.11865 -31.24869 -29.83665 -28.39444 -27.72968 -25.48969 -24.55510 -23.69112 -22.48255 -21.85389 -20.53878 -19.91048 -18.54281 -17.83888 -17.18097 -17.04063 -16.49964 -16.15638 -16.08379 -15.97700 -15.70584 -15.52851 -15.29714 -15.02336 -14.38087 -14.16206 -13.90059 -13.48491 -13.40500 -13.25313 -13.18098 -12.91165 -12.72426 -12.66630 -12.40711 -12.25208 -12.20133 -11.99311 -11.96028 -11.87915 -11.70058 -10.93869 -10.90395 -10.73425 -10.56062 -9.79624 -9.47396 -9.01030 -8.30054 -6.84228 1.39660 1.41442 1.56740 2.23225 2.44960 2.56045 2.78436 2.99330 3.08760 3.42932 3.59360 3.72235 3.88356 3.97208 4.04846 4.14158 4.17382 4.26603 4.36647 4.40996 4.47260 4.52580 4.56788 4.68692 4.70666 4.74644 4.81176 4.82452 4.83622 4.85286 4.90993 4.94729 4.96893 5.06017 5.14230 5.20372 5.28939 5.38321 5.73693 5.83554 6.01714 6.11783 6.14686 6.41413 6.87468 7.42464 8.45881 8.66770 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035887 B = 0.002925 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.036938 B = 9571.268426 C =10002.376304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.027 3.973 3 Si 0.997 3.003 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.246 1.246 7 C -0.568 4.568 8 H 0.096 0.904 9 C 0.540 3.460 10 O -0.635 6.635 11 N -0.648 5.648 12 C 0.122 3.878 13 C 0.064 3.936 14 N -0.533 5.533 15 C 0.091 3.909 16 C -0.121 4.121 17 H 0.114 0.886 18 C -0.164 4.164 19 C -0.154 4.154 20 C -0.121 4.121 21 C 0.044 3.956 22 O -0.400 6.400 23 C 0.080 3.920 24 C 0.050 3.950 25 C 0.123 3.877 26 H 0.274 0.726 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.012 0.988 30 H 0.100 0.900 31 H 0.030 0.970 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.020 0.980 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.797 -16.539 -8.226 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.169 1.169 7 C -0.605 4.605 8 H 0.113 0.887 9 C 0.346 3.654 10 O -0.523 6.523 11 N -0.385 5.385 12 C -0.001 4.001 13 C -0.065 4.065 14 N -0.258 5.258 15 C -0.037 4.037 16 C -0.139 4.139 17 H 0.132 0.868 18 C -0.201 4.201 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.033 4.033 22 O -0.319 6.319 23 C 0.004 3.996 24 C -0.078 4.078 25 C -0.001 4.001 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.118 0.882 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.038 0.962 42 H 0.129 0.871 43 H 0.105 0.895 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.100 -16.907 -7.787 22.761 hybrid contribution -0.555 1.359 -0.602 1.587 sum 12.545 -15.548 -8.390 21.668 Atomic orbital electron populations 1.70191 1.09652 1.28914 1.36800 1.27021 0.95490 1.05044 0.91164 0.85036 0.78901 0.75040 0.79449 1.18533 1.20052 1.16868 1.21491 0.94836 0.89678 1.54465 0.88659 1.18705 0.86485 0.84221 0.75944 1.90531 1.17178 1.87391 1.57155 1.48155 1.06962 1.05632 1.77782 1.21403 0.96147 0.84957 0.97635 1.22358 0.88712 1.00086 0.95381 1.61938 1.04678 1.13048 1.46100 1.21654 1.00380 0.90419 0.91213 1.22157 1.02842 0.92435 0.96507 0.86821 1.23180 0.92377 1.03410 1.01146 1.22266 0.96933 0.95745 1.00525 1.22416 0.96365 0.99111 0.97957 1.23580 0.93269 0.85732 1.00670 1.89129 1.58508 1.35651 1.48625 1.22878 0.96827 0.90489 0.89434 1.22468 1.00269 0.88502 0.96577 1.21697 0.80023 1.00852 0.97488 0.91648 0.92110 0.93028 0.96942 0.88162 0.95221 0.88881 0.87806 0.88947 0.90453 0.89204 0.88008 0.91150 0.90912 0.88612 0.96152 0.87075 0.89452 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -51.05 11.86 21.84 0.26 -50.79 16 2 C 0.03 1.53 5.50 85.30 0.47 2.00 16 3 Si 1.00 40.62 29.56 68.60 2.03 42.64 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.25 -9.18 7.11 99.48 0.71 -8.48 16 7 C -0.57 -32.08 8.86 24.83 0.22 -31.86 16 8 H 0.10 4.75 5.71 -2.91 -0.02 4.73 16 9 C 0.54 31.98 7.62 86.36 0.66 32.64 16 10 O -0.63 -43.55 14.54 -4.29 -0.06 -43.61 16 11 N -0.65 -30.27 3.00 -822.14 -2.47 -32.74 16 12 C 0.12 4.98 6.61 86.51 0.57 5.55 16 13 C 0.06 2.00 5.49 86.54 0.48 2.48 16 14 N -0.53 -14.22 4.63 -894.32 -4.14 -18.36 16 15 C 0.09 1.82 4.41 86.30 0.38 2.20 16 16 C -0.12 -2.14 4.57 -11.03 -0.05 -2.19 16 17 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 18 C -0.16 -2.78 9.94 30.37 0.30 -2.48 16 19 C -0.15 -2.44 2.50 -52.30 -0.13 -2.57 16 20 C -0.12 -1.67 6.50 31.41 0.20 -1.47 16 21 C 0.04 0.60 7.65 72.56 0.56 1.16 16 22 O -0.40 -7.76 11.65 -148.98 -1.74 -9.49 16 23 C 0.08 1.28 7.44 72.21 0.54 1.82 16 24 C 0.05 1.44 5.62 86.38 0.49 1.92 16 25 C 0.12 4.43 6.51 86.35 0.56 4.99 16 26 H 0.27 15.32 8.29 -92.71 -0.77 14.55 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.05 2.42 7.09 -2.38 -0.02 2.40 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 2.65 7.06 -2.39 -0.02 2.64 16 31 H 0.03 0.64 7.86 -2.39 -0.02 0.62 16 32 H 0.09 1.58 7.25 -2.39 -0.02 1.57 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.09 1.63 8.04 -2.39 -0.02 1.61 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.09 6.90 -2.39 -0.02 1.07 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.10 1.40 8.12 -2.39 -0.02 1.38 16 41 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.11 2.37 7.99 -2.39 -0.02 2.36 16 43 H 0.09 3.27 5.38 -2.39 -0.01 3.25 16 44 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -77.04 346.89 0.10 -76.94 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.98 Total: 21.22 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 5.24 Total: 14.19 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -6.35 Total: -101.90 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -1.80 Total: -53.11 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.64 kcal Total: -77.04 0.10 -76.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886230021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.558 kcal (2) G-P(sol) polarization free energy of solvation -77.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds